Cow genome map
| Conread name: | Ss1.1-rfbs3939b_n22.5 |
| Conread position: | 3-310 |
| Cow position: | chr7:1439850-1440156 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 254, 20 |
| Conread position: | 9-301 |
| Cow position: | chr7:1014902-1015195 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 5, 92 |
| Conread position: | 15-309 |
| Cow position: | chr7:11600879-11600586 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 227, 12 |
| Conread position: | 17-301 |
| Cow position: | chr7:8325211-8325493 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 153, 18 |
| Conread position: | 18-301 |
| Cow position: | chr7:8325716-8325997 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 18-309 |
| Cow position: | chr7:3179837-3180130 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 19-301 |
| Cow position: | chr7:8277990-8278272 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 71 |
| Conread position: | 19-310 |
| Cow position: | chr7:18390219-18390512 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 7, 49 |
| Conread position: | 21-301 |
| Cow position: | chr7:3180092-3180373 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 5, 82 |
| Conread position: | 22-255 |
| Cow position: | chr7:8325382-8325616 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 77 |
| Conread position: | 22-301 |
| Cow position: | chr7:8277657-8277936 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 71, 87 |
| Conread position: | 22-309 |
| Cow position: | chr7:1439952-1440239 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 280, 19 |
| Conread position: | 25-246 |
| Cow position: | chr7:8324965-8325186 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 61, 83 |
| Conread position: | 25-250 |
| Cow position: | chr7:1015255-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 25-251 |
| Cow position: | chr7:8277912-8278138 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 65 |
| Conread position: | 25-251 |
| Cow position: | chr7:8325049-8325275 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-256 |
| Cow position: | chr7:11434507-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-264 |
| Cow position: | chr7:1440038-1440277 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 159, 165 |
| Conread position: | 25-289 |
| Cow position: | chr7:1014337-1014601 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 83, 61 |
| Conread position: | 25-289 |
| Cow position: | chr7:42878540-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-298 |
| Cow position: | chr7:1014835-1015108 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-298 |
| Cow position: | chr7:42878624-42878351 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 225, 216 |
| Conread position: | 25-301 |
| Cow position: | chr7:1015003-1015279 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr7:3179761-3180037 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 83, 61 |
| Conread position: | 25-301 |
| Cow position: | chr7:3179929-3180205 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 225, 234 |
| Conread position: | 25-301 |
| Cow position: | chr7:3180265-3180541 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 228, 233 |
| Conread position: | 25-301 |
| Cow position: | chr7:8325805-8326081 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 250, 232 |
| Conread position: | 25-301 |
| Cow position: | chr7:42878792-42878516 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 147, 153 |
| Conread position: | 25-301 |
| Cow position: | chr7:42878876-42878600 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 145, 154 |
| Conread position: | 25-301 |
| Cow position: | chr7:42879044-42878768 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-302 |
| Cow position: | chr7:1015171-1015448 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-309 |
| Cow position: | chr7:1015087-1015372 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 274, 0 |
| Conread position: | 25-309 |
| Cow position: | chr7:1439534-1439821 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 152, 58 |
| Conread position: | 25-309 |
| Cow position: | chr7:11601039-11600754 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 150, 144 |
| Conread position: | 25-309 |
| Cow position: | chr7:42878960-42878675 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 237, 228 |
| Conread position: | 25-309 |
| Cow position: | chr7:42879212-42878927 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 25-310 |
| Cow position: | chr7:3180517-3180801 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 275, 0 |
| Conread position: | 25-310 |
| Cow position: | chr7:42879128-42878842 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 26-307 |
| Cow position: | chr7:1014668-1014950 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 27-301 |
| Cow position: | chr7:1014753-1015027 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 225, 231 |
| Conread position: | 27-301 |
| Cow position: | chr7:3180183-3180457 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-309 |
| Cow position: | chr7:11600784-11600502 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 203, 208 |
| Conread position: | 30-230 |
| Cow position: | chr7:11601118-11600918 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-254 |
| Cow position: | chr7:8325474-8325698 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 79 |
| Conread position: | 30-289 |
| Cow position: | chr7:11600698-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-291 |
| Cow position: | chr7:18390147-18390408 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 70 |
| Conread position: | 30-301 |
| Cow position: | chr7:3180438-3180709 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 67, 79 |
| Conread position: | 30-309 |
| Cow position: | chr7:8243791-8244069 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 80 |
| Conread position: | 30-309 |
| Cow position: | chr7:11601202-11600922 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 30-310 |
| Cow position: | chr7:18390315-18390596 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 31-258 |
| Cow position: | chr7:18390568-18390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-309 |
| Cow position: | chr7:8325559-8325838 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 238, 225 |
| Conread position: | 33-301 |
| Cow position: | chr7:3180021-3180289 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 215, 224 |
| Conread position: | 33-301 |
| Cow position: | chr7:42878700-42878432 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-309 |
| Cow position: | chr7:8324891-8325166 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 36-301 |
| Cow position: | chr7:18390489-18390754 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 41-250 |
| Cow position: | chr7:8243382-8243591 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 45-301 |
| Cow position: | chr7:42879276-42879020 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.