Cow genome map
| Conread name: | Ss1.1-rfbs3939b_n22.5 |
| Conread position: | 8-300 |
| Cow position: | chr8:45200980-45201273 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 21-243 |
| Cow position: | chr8:55581133-55581356 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 22-301 |
| Cow position: | chr8:46816190-46816469 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-301 |
| Cow position: | chr8:46816862-46817141 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-301 |
| Cow position: | chr8:55580967-55581246 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-310 |
| Cow position: | chr8:46816694-46816983 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 265 |
| Conread position: | 25-224 |
| Cow position: | chr8:48406978-48406779 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 84 |
| Conread position: | 25-226 |
| Cow position: | chr8:45201754-45201955 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-250 |
| Cow position: | chr8:48407314-48407089 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 132, 163 |
| Conread position: | 25-282 |
| Cow position: | chr8:45201670-45201927 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-282 |
| Cow position: | chr8:46817117-46817374 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-289 |
| Cow position: | chr8:48407230-48406966 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 25-289 |
| Cow position: | chr8:55581222-55581486 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 162, 145 |
| Conread position: | 25-291 |
| Cow position: | chr8:45201082-45201348 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-291 |
| Cow position: | chr8:45201250-45201516 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 144, 151 |
| Conread position: | 25-291 |
| Cow position: | chr8:48407146-48406880 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 70, 62 |
| Conread position: | 25-298 |
| Cow position: | chr8:48407398-48407125 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 25-301 |
| Cow position: | chr8:45201166-45201442 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr8:45201334-45201610 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr8:45201418-45201694 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr8:45201502-45201778 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr8:45201586-45201862 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr8:46817033-46817309 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 233, 216 |
| Conread position: | 25-301 |
| Cow position: | chr8:48406642-48406366 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr8:48407566-48407290 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr8:55581054-55581330 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-309 |
| Cow position: | chr8:46816277-46816562 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 53, 59 |
| Conread position: | 25-309 |
| Cow position: | chr8:46816445-46816730 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 25-309 |
| Cow position: | chr8:55581390-55581675 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 277, 0 |
| Conread position: | 25-348 |
| Cow position: | chr8:48407482-48407158 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 276, 310 |
| Conread position: | 27-309 |
| Cow position: | chr8:46815940-46816226 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 30-301 |
| Cow position: | chr8:55580891-55581162 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-301 |
| Cow position: | chr8:46816369-46816637 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 137, 145 |
| Conread position: | 33-301 |
| Cow position: | chr8:46816789-46817057 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 139, 145 |
| Conread position: | 33-301 |
| Cow position: | chr8:48407054-48406786 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 228, 223 |
| Conread position: | 35-301 |
| Cow position: | chr8:46815864-46816133 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 35-301 |
| Cow position: | chr8:46816035-46816301 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 143 |
| Conread position: | 35-301 |
| Cow position: | chr8:46816539-46816805 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-301 |
| Cow position: | chr8:46816959-46817225 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-301 |
| Cow position: | chr8:55580816-55581078 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 65 |
| Conread position: | 45-291 |
| Cow position: | chr8:48406706-48406460 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-301 |
| Cow position: | chr8:45200936-45201190 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 206, 212 |
| Conread position: | 66-289 |
| Cow position: | chr8:6958059-6957836 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 43 |
Show alignments to all cow chromosomes.