Cow genome map

Conread name: Ss1.1-rfcc08b_f3.5

Conread position: 10-373
Cow position:
Alignm length: 366
Alignm identity: 222
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 60, 65

Conread position: 10-424
Cow position:
Alignm length: 417
Alignm identity: 251
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 53, 31

Conread position: 11-469
Cow position:
Alignm length: 460
Alignm identity: 290
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 117, 136

Conread position: 14-472
Cow position:
Alignm length: 462
Alignm identity: 284
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 33, 27

Conread position: 29-450
Cow position:
Alignm length: 423
Alignm identity: 256
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 250, 239

Conread position: 41-458
Cow position:
Alignm length: 423
Alignm identity: 275
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 19, 48

Conread position: 42-472
Cow position:
Alignm length: 432
Alignm identity: 261
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 23, 0

Conread position: 47-463
Cow position:
Alignm length: 417
Alignm identity: 264
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 51-474
Cow position:
Alignm length: 425
Alignm identity: 268
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 359, 345

Conread position: 51-474
Cow position:
Alignm length: 427
Alignm identity: 275
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 223, 236

Conread position: 56-446
Cow position:
Alignm length: 391
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 61-447
Cow position:
Alignm length: 388
Alignm identity: 243
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 35, 20

Conread position: 62-420
Cow position:
Alignm length: 359
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 62-452
Cow position:
Alignm length: 392
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 0

Conread position: 62-470
Cow position:
Alignm length: 410
Alignm identity: 259
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 19, 26

Conread position: 62-472
Cow position:
Alignm length: 411
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 62-473
Cow position:
Alignm length: 412
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 64-456
Cow position:
Alignm length: 395
Alignm identity: 249
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 32, 27

Conread position: 64-459
Cow position:
Alignm length: 401
Alignm identity: 265
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 17, 30

Conread position: 64-470
Cow position:
Alignm length: 408
Alignm identity: 260
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 236, 229

Conread position: 64-470
Cow position:
Alignm length: 408
Alignm identity: 258
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 236, 229

Conread position: 64-472
Cow position:
Alignm length: 409
Alignm identity: 262
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 65-404
Cow position:
Alignm length: 340
Alignm identity: 206
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 65-442
Cow position:
Alignm length: 381
Alignm identity: 245
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 16, 23

Conread position: 65-470
Cow position:
Alignm length: 407
Alignm identity: 249
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 94, 90

Conread position: 65-473
Cow position:
Alignm length: 410
Alignm identity: 257
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 283, 0

Conread position: 66-473
Cow position:
Alignm length: 410
Alignm identity: 241
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 208, 217

Conread position: 67-478
Cow position:
Alignm length: 412
Alignm identity: 260
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 58, 0

Conread position: 70-456
Cow position:
Alignm length: 387
Alignm identity: 244
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 71-350
Cow position:
Alignm length: 283
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 78, 67

Conread position: 71-387
Cow position:
Alignm length: 320
Alignm identity: 211
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 78, 67

Conread position: 71-456
Cow position:
Alignm length: 386
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 71-462
Cow position:
Alignm length: 393
Alignm identity: 236
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 326, 339

Conread position: 71-463
Cow position:
Alignm length: 396
Alignm identity: 250
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 9, 0

Conread position: 71-468
Cow position:
Alignm length: 399
Alignm identity: 255
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 215, 204

Conread position: 71-476
Cow position:
Alignm length: 408
Alignm identity: 256
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 203, 212

Conread position: 73-386
Cow position:
Alignm length: 317
Alignm identity: 207
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 151, 160

Conread position: 73-471
Cow position:
Alignm length: 401
Alignm identity: 258
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 8, 15

Conread position: 73-471
Cow position:
Alignm length: 401
Alignm identity: 252
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 86, 80

Conread position: 73-472
Cow position:
Alignm length: 401
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 215

Conread position: 73-473
Cow position:
Alignm length: 405
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 8

Conread position: 74-356
Cow position:
Alignm length: 284
Alignm identity: 179
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 269, 0

Conread position: 74-366
Cow position:
Alignm length: 294
Alignm identity: 181
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 213, 209

Conread position: 74-384
Cow position:
Alignm length: 311
Alignm identity: 197
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 74-432
Cow position:
Alignm length: 362
Alignm identity: 234
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 56, 67

Conread position: 74-441
Cow position:
Alignm length: 370
Alignm identity: 240
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 75, 64

Conread position: 74-444
Cow position:
Alignm length: 374
Alignm identity: 240
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 56, 67

Conread position: 74-468
Cow position:
Alignm length: 397
Alignm identity: 257
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 54, 9

Conread position: 74-472
Cow position:
Alignm length: 401
Alignm identity: 247
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 39, 28

Conread position: 74-472
Cow position:
Alignm length: 399
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 74-472
Cow position:
Alignm length: 400
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 336

Conread position: 74-473
Cow position:
Alignm length: 401
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 71

Conread position: 74-473
Cow position:
Alignm length: 401
Alignm identity: 256
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 242, 233

Conread position: 74-473
Cow position:
Alignm length: 405
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 76

Conread position: 74-473
Cow position:
Alignm length: 401
Alignm identity: 255
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 242, 233

Conread position: 74-474
Cow position:
Alignm length: 402
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 75

Conread position: 74-474
Cow position:
Alignm length: 402
Alignm identity: 257
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 259, 264

Conread position: 74-474
Cow position:
Alignm length: 402
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 386

Conread position: 74-474
Cow position:
Alignm length: 404
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 79

Conread position: 74-474
Cow position:
Alignm length: 406
Alignm identity: 248
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 149, 168

Conread position: 74-474
Cow position:
Alignm length: 404
Alignm identity: 245
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 74, 64

Conread position: 74-474
Cow position:
Alignm length: 403
Alignm identity: 256
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 75, 64

Conread position: 74-474
Cow position:
Alignm length: 401
Alignm identity: 254
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 74-479
Cow position:
Alignm length: 406
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 399, 0

Conread position: 80-462
Cow position:
Alignm length: 384
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 7

Conread position: 80-474
Cow position:
Alignm length: 397
Alignm identity: 257
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 118, 7

Conread position: 81-428
Cow position:
Alignm length: 348
Alignm identity: 208
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 333, 0

Conread position: 81-472
Cow position:
Alignm length: 394
Alignm identity: 257
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 48, 61

Conread position: 81-473
Cow position:
Alignm length: 394
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 238

Conread position: 81-479
Cow position:
Alignm length: 400
Alignm identity: 257
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 242, 6

Conread position: 82-456
Cow position:
Alignm length: 375
Alignm identity: 236
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 84-435
Cow position:
Alignm length: 352
Alignm identity: 222
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 84-477
Cow position:
Alignm length: 398
Alignm identity: 248
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 240, 229

Conread position: 87-474
Cow position:
Alignm length: 391
Alignm identity: 244
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 140, 145

Conread position: 90-450
Cow position:
Alignm length: 365
Alignm identity: 239
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 86, 96

Conread position: 94-426
Cow position:
Alignm length: 335
Alignm identity: 218
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 54, 44

Conread position: 94-441
Cow position:
Alignm length: 352
Alignm identity: 231
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 180, 221

Conread position: 94-447
Cow position:
Alignm length: 355
Alignm identity: 223
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 185, 174

Conread position: 94-447
Cow position:
Alignm length: 355
Alignm identity: 226
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 7, 0

Conread position: 94-448
Cow position:
Alignm length: 356
Alignm identity: 220
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 11, 0

Conread position: 94-468
Cow position:
Alignm length: 376
Alignm identity: 228
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 133, 138

Conread position: 94-474
Cow position:
Alignm length: 382
Alignm identity: 243
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 49, 56

Conread position: 94-474
Cow position:
Alignm length: 382
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 56

Conread position: 94-474
Cow position:
Alignm length: 382
Alignm identity: 241
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 192, 188

Conread position: 94-478
Cow position:
Alignm length: 385
Alignm identity: 242
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 366, 0

Conread position: 95-432
Cow position:
Alignm length: 340
Alignm identity: 223
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 39

Conread position: 95-447
Cow position:
Alignm length: 354
Alignm identity: 231
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 61, 42

Conread position: 95-447
Cow position:
Alignm length: 353
Alignm identity: 224
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 95-448
Cow position:
Alignm length: 354
Alignm identity: 226
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 95-449
Cow position:
Alignm length: 356
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 193

Conread position: 95-456
Cow position:
Alignm length: 364
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 41

Conread position: 95-456
Cow position:
Alignm length: 362
Alignm identity: 230
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 345, 0

Conread position: 95-462
Cow position:
Alignm length: 368
Alignm identity: 241
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 95-462
Cow position:
Alignm length: 368
Alignm identity: 234
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 95-469
Cow position:
Alignm length: 378
Alignm identity: 242
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 137, 128

Conread position: 95-470
Cow position:
Alignm length: 378
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 43

Conread position: 95-472
Cow position:
Alignm length: 378
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 95-472
Cow position:
Alignm length: 379
Alignm identity: 227
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 190, 173

Conread position: 95-472
Cow position:
Alignm length: 380
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 59

Conread position: 95-473
Cow position:
Alignm length: 381
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 41

Conread position: 95-473
Cow position:
Alignm length: 383
Alignm identity: 255
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 54, 42

Conread position: 95-474
Cow position:
Alignm length: 382
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 40

Conread position: 95-474
Cow position:
Alignm length: 384
Alignm identity: 240
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 135, 148

Conread position: 95-474
Cow position:
Alignm length: 384
Alignm identity: 235
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 64, 55

Conread position: 96-281
Cow position:
Alignm length: 188
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 50

Conread position: 96-321
Cow position:
Alignm length: 227
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 209, 218

Conread position: 96-459
Cow position:
Alignm length: 367
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 50

Conread position: 96-474
Cow position:
Alignm length: 379
Alignm identity: 224
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 98-451
Cow position:
Alignm length: 354
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 98-456
Cow position:
Alignm length: 363
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 43, 56

Conread position: 98-470
Cow position:
Alignm length: 374
Alignm identity: 233
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 41, 47

Conread position: 98-472
Cow position:
Alignm length: 375
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 98-473
Cow position:
Alignm length: 378
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 37

Conread position: 102-456
Cow position:
Alignm length: 356
Alignm identity: 223
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 37, 49

Conread position: 102-473
Cow position:
Alignm length: 373
Alignm identity: 228
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 225, 211

Conread position: 104-477
Cow position:
Alignm length: 374
Alignm identity: 236
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 105-458
Cow position:
Alignm length: 357
Alignm identity: 228
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 93, 33

Conread position: 105-462
Cow position:
Alignm length: 362
Alignm identity: 234
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 43, 30

Conread position: 110-426
Cow position:
Alignm length: 317
Alignm identity: 201
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 110-463
Cow position:
Alignm length: 354
Alignm identity: 228
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 116-441
Cow position:
Alignm length: 326
Alignm identity: 195
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 116-447
Cow position:
Alignm length: 332
Alignm identity: 223
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 116-454
Cow position:
Alignm length: 340
Alignm identity: 210
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 194, 51

Conread position: 116-461
Cow position:
Alignm length: 346
Alignm identity: 206
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 147-411
Cow position:
Alignm length: 265
Alignm identity: 170
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 148-471
Cow position:
Alignm length: 326
Alignm identity: 217
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 168, 145

Conread position: 154-474
Cow position:
Alignm length: 321
Alignm identity: 201
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 109, 0

Conread position: 155-344
Cow position:
Alignm length: 190
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 175, 0

Conread position: 155-447
Cow position:
Alignm length: 293
Alignm identity: 179
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 155-448
Cow position:
Alignm length: 295
Alignm identity: 184
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 107, 95

Conread position: 155-474
Cow position:
Alignm length: 321
Alignm identity: 204
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 71, 80

Conread position: 156-462
Cow position:
Alignm length: 307
Alignm identity: 187
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 156-463
Cow position:
Alignm length: 308
Alignm identity: 196
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 156-479
Cow position:
Alignm length: 324
Alignm identity: 207
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 316, 0

Conread position: 157-475
Cow position:
Alignm length: 319
Alignm identity: 200
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 158-473
Cow position:
Alignm length: 318
Alignm identity: 209
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 60, 52

Conread position: 160-474
Cow position:
Alignm length: 316
Alignm identity: 203
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 158, 132

Conread position: 162-447
Cow position:
Alignm length: 287
Alignm identity: 180
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 156, 131

Conread position: 168-456
Cow position:
Alignm length: 289
Alignm identity: 178
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 168-471
Cow position:
Alignm length: 305
Alignm identity: 193
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 114, 120

Conread position: 176-462
Cow position:
Alignm length: 287
Alignm identity: 178
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 184-474
Cow position:
Alignm length: 293
Alignm identity: 188
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 59, 49

Conread position: 229-472
Cow position:
Alignm length: 244
Alignm identity: 156
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.