Cow genome map
| Conread name: | Ss1.1-rfcc08b_f3.5 |
| Conread position: | 10-453 |
| Cow position: | chr17:22553103-22552659 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 277 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 71, 78 |
| Conread position: | 11-373 |
| Cow position: | chr17:22551842-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 41-447 |
| Cow position: | chr17:22552233-22551826 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 41-471 |
| Cow position: | chr17:22590239-22589808 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 277 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 6, 26 |
| Conread position: | 42-449 |
| Cow position: | chr17:22551896-22551487 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 24, 56 |
| Conread position: | 46-463 |
| Cow position: | chr17:22452260-22451843 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 42 |
| Conread position: | 55-442 |
| Cow position: | chr17:22552301-22551915 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 61-442 |
| Cow position: | chr17:22552967-22552587 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 20, 5 |
| Conread position: | 62-478 |
| Cow position: | chr17:22552463-22552047 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 345, 349 |
| Conread position: | 64-447 |
| Cow position: | chr17:22473305-22473688 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 65-432 |
| Cow position: | chr17:22452073-22451706 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 65-447 |
| Cow position: | chr17:22499339-22498957 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 65-448 |
| Cow position: | chr17:22498835-22498461 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 65-474 |
| Cow position: | chr17:22452325-22451916 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 65-478 |
| Cow position: | chr17:22589710-22589297 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 66-448 |
| Cow position: | chr17:22589877-22589495 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 80-472 |
| Cow position: | chr17:22473406-22473797 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 232, 7 |
| Conread position: | 94-459 |
| Cow position: | chr17:22473587-22473953 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 337, 0 |
| Conread position: | 94-469 |
| Cow position: | chr17:22499142-22498768 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 245 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 44, 51 |
| Conread position: | 94-471 |
| Cow position: | chr17:22499394-22499017 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 56 |
| Conread position: | 95-442 |
| Cow position: | chr17:22552766-22552419 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-463 |
| Cow position: | chr17:22552094-22551726 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-463 |
| Cow position: | chr17:22552346-22551978 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-463 |
| Cow position: | chr17:22589764-22589396 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 215, 210 |
| Conread position: | 95-472 |
| Cow position: | chr17:22552682-22552305 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 95-472 |
| Cow position: | chr17:22590268-22589891 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 95-473 |
| Cow position: | chr17:22452379-22452001 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 95-474 |
| Cow position: | chr17:22552514-22552135 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 132, 147 |
| Conread position: | 97-475 |
| Cow position: | chr17:22552596-22552218 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 352, 359 |
| Conread position: | 98-471 |
| Cow position: | chr17:22589929-22589556 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 53 |
| Conread position: | 104-453 |
| Cow position: | chr17:22498880-22498531 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 104-456 |
| Cow position: | chr17:22452118-22451766 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 105-463 |
| Cow position: | chr17:22473262-22473620 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 116-468 |
| Cow position: | chr17:22590079-22589727 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 232 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 117-472 |
| Cow position: | chr17:22499035-22498680 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 99, 92 |
| Conread position: | 145-419 |
| Cow position: | chr17:22452413-22452139 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 147-441 |
| Cow position: | chr17:22590300-22590006 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 155-473 |
| Cow position: | chr17:22499417-22499099 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 209-475 |
| Cow position: | chr17:22473201-22473464 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
Show alignments to all cow chromosomes.