Cow genome map


           Conread name:
           Ss1.1-rfcc08b_f3.5
        

               Conread position:
               10-453
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               277
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               71, 78
               

               Conread position:
               11-373
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               227
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               53, 30
               

               Conread position:
               41-447
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               12, 57
               

               Conread position:
               41-471
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               277
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               6, 26
               

               Conread position:
               42-449
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               262
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               24, 56
               

               Conread position:
               46-463
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 42
               

               Conread position:
               55-442
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               249
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               26, 10
               

               Conread position:
               61-442
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               242
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               20, 5
               

               Conread position:
               62-478
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               266
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               345, 349
               

               Conread position:
               64-447
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               18, 24
               

               Conread position:
               65-432
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               241
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               65-447
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               65-448
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               248
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               65-474
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               263
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               16, 41
               

               Conread position:
               65-478
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               257
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               35, 27
               

               Conread position:
               66-448
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               15, 40
               

               Conread position:
               80-472
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               244
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               232, 7
               

               Conread position:
               94-459
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               337, 0
               

               Conread position:
               94-469
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               245
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               44, 51
               

               Conread position:
               94-471
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 56
               

               Conread position:
               95-442
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-463
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               240
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-463
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-463
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               215, 210
               

               Conread position:
               95-472
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               250
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               43, 50
               

               Conread position:
               95-472
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               243
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               43, 50
               

               Conread position:
               95-473
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               250
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               42, 50
               

               Conread position:
               95-474
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               252
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               132, 147
               

               Conread position:
               97-475
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               246
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               352, 359
               

               Conread position:
               98-471
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 53
               

               Conread position:
               104-453
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               34, 46
               

               Conread position:
               104-456
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               229
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               105-463
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               116-468
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               232
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               117-472
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               99, 92
               

               Conread position:
               145-419
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               147-441
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               155-473
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               209-475
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               62, 0
               
Show alignments to all cow chromosomes.