Cow genome map
| Conread name: | Ss1.1-rfcc08b_f3.5 |
| Conread position: | 10-442 |
| Cow position: | chr19:43570222-43569790 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 60, 51 |
| Conread position: | 10-459 |
| Cow position: | chr19:23613602-23614053 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 10-474 |
| Cow position: | chr19:23614274-23614738 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 11-463 |
| Cow position: | chr19:14939991-14940443 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 11-463 |
| Cow position: | chr19:23614527-23614979 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 11-468 |
| Cow position: | chr19:14960054-14959613 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 11-468 |
| Cow position: | chr19:23613435-23613892 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 11-468 |
| Cow position: | chr19:23614107-23614564 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 292 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 13-440 |
| Cow position: | chr19:14948460-14948035 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 42, 8 |
| Conread position: | 14-470 |
| Cow position: | chr19:23597203-23597659 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 28 |
| Conread position: | 14-475 |
| Cow position: | chr19:14960385-14959926 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 89 |
| Conread position: | 18-474 |
| Cow position: | chr19:23596874-23597327 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 43 |
| Conread position: | 41-443 |
| Cow position: | chr19:43570273-43569873 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 271 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 41-470 |
| Cow position: | chr19:23613716-23614146 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 16, 105 |
| Conread position: | 41-474 |
| Cow position: | chr19:23596980-23597411 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 42-471 |
| Cow position: | chr19:14940273-14940703 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 358 |
| Conread position: | 42-471 |
| Cow position: | chr19:23597062-23597492 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 42-472 |
| Cow position: | chr19:43570349-43569928 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 42-474 |
| Cow position: | chr19:23597147-23597579 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 277 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 109, 94 |
| Conread position: | 47-474 |
| Cow position: | chr19:14960268-14959843 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 56-448 |
| Cow position: | chr19:23613984-23614376 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 64-448 |
| Cow position: | chr19:23613824-23614208 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 83 |
| Conread position: | 64-453 |
| Cow position: | chr19:14959679-14959292 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 240, 32 |
| Conread position: | 64-459 |
| Cow position: | chr19:23614244-23614641 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 65-429 |
| Cow position: | chr19:14960084-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 65-456 |
| Cow position: | chr19:23649863-23650254 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 65-463 |
| Cow position: | chr19:23613573-23613971 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 258 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 65-469 |
| Cow position: | chr19:14940465-14940869 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-470 |
| Cow position: | chr19:23614497-23614902 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 244 |
| Conread position: | 65-471 |
| Cow position: | chr19:14940381-14940787 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 65-473 |
| Cow position: | chr19:20677840-20678248 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 65-474 |
| Cow position: | chr19:14916020-14916424 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 69-447 |
| Cow position: | chr19:23649699-23650077 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 224 |
| Conread position: | 73-427 |
| Cow position: | chr19:43569991-43569641 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 73-432 |
| Cow position: | chr19:23597346-23597705 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 237 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 338, 333 |
| Conread position: | 73-434 |
| Cow position: | chr19:23614757-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 86, 64 |
| Conread position: | 73-450 |
| Cow position: | chr19:23614421-23614798 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 73-471 |
| Cow position: | chr19:23613413-23613811 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 80-385 |
| Cow position: | chr19:20678360-20678664 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 77, 7 |
| Conread position: | 80-448 |
| Cow position: | chr19:14959253-14958892 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 80-463 |
| Cow position: | chr19:20635476-20635094 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 248 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 226, 7 |
| Conread position: | 80-472 |
| Cow position: | chr19:20677518-20677911 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 80 |
| Conread position: | 80-474 |
| Cow position: | chr19:14940229-14940622 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 85-459 |
| Cow position: | chr19:14948474-14948098 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 250 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 92-472 |
| Cow position: | chr19:23613348-23613728 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 226 |
| Conread position: | 92-474 |
| Cow position: | chr19:23649386-23649768 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 93-449 |
| Cow position: | chr19:43570627-43570277 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 94-463 |
| Cow position: | chr19:20678037-20678406 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 94-468 |
| Cow position: | chr19:23650060-23650434 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 224 |
| Conread position: | 94-471 |
| Cow position: | chr19:23614694-23615071 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 362 |
| Conread position: | 95-348 |
| Cow position: | chr19:14959077-14958824 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-430 |
| Cow position: | chr19:14959155-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 95-436 |
| Cow position: | chr19:23650145-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-447 |
| Cow position: | chr19:20677702-20678054 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 95-448 |
| Cow position: | chr19:23649641-23649994 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 51, 55 |
| Conread position: | 95-463 |
| Cow position: | chr19:20635630-20635262 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 95-463 |
| Cow position: | chr19:20677954-20678322 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 54 |
| Conread position: | 95-463 |
| Cow position: | chr19:20678290-20678658 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 95-463 |
| Cow position: | chr19:23649557-23649925 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-471 |
| Cow position: | chr19:14939991-14940367 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-471 |
| Cow position: | chr19:14959398-14959037 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 95-471 |
| Cow position: | chr19:23613939-23614315 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 242 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-474 |
| Cow position: | chr19:23649473-23649852 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-474 |
| Cow position: | chr19:23649977-23650356 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 188 |
| Conread position: | 95-477 |
| Cow position: | chr19:14940579-14940961 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 95-477 |
| Cow position: | chr19:14960138-14959758 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 277, 259 |
| Conread position: | 96-474 |
| Cow position: | chr19:14915965-14916341 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 96-474 |
| Cow position: | chr19:23649810-23650188 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-456 |
| Cow position: | chr19:20677453-20677811 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 213, 207 |
| Conread position: | 98-474 |
| Cow position: | chr19:23596870-23597243 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 47 |
| Conread position: | 98-478 |
| Cow position: | chr19:20635710-20635331 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 104-472 |
| Cow position: | chr19:20678215-20678583 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 110-473 |
| Cow position: | chr19:14940678-14941041 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 110-474 |
| Cow position: | chr19:14940174-14940538 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 115-465 |
| Cow position: | chr19:14959712-14959365 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 116-463 |
| Cow position: | chr19:20677639-20677986 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 150-475 |
| Cow position: | chr19:14948492-14948168 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 158-456 |
| Cow position: | chr19:14960409-14960113 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 256, 0 |
| Conread position: | 163-474 |
| Cow position: | chr19:23649289-23649600 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 176-448 |
| Cow position: | chr19:14960475-14960203 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 176-474 |
| Cow position: | chr19:14939988-14940286 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 179-474 |
| Cow position: | chr19:23613351-23613646 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.