Cow genome map


           Conread name:
           Ss1.1-rfcc08b_f3.5
        

               Conread position:
               10-442
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               273
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               60, 51
               

               Conread position:
               10-459
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 25
               

               Conread position:
               10-474
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 57
               

               Conread position:
               11-463
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 30
               

               Conread position:
               11-463
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               280
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               46, 30
               

               Conread position:
               11-468
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               295
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               54, 30
               

               Conread position:
               11-468
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 30
               

               Conread position:
               11-468
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               292
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               53, 30
               

               Conread position:
               13-440
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               269
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               42, 8
               

               Conread position:
               14-470
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 28
               

               Conread position:
               14-475
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 89
               

               Conread position:
               18-474
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               283
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               48, 43
               

               Conread position:
               41-443
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               271
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               12, 21
               

               Conread position:
               41-470
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               278
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               16, 105
               

               Conread position:
               41-474
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               274
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               22, 48
               

               Conread position:
               42-471
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 358
               

               Conread position:
               42-471
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 47
               

               Conread position:
               42-472
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 46
               

               Conread position:
               42-474
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               277
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               109, 94
               

               Conread position:
               47-474
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 50
               

               Conread position:
               56-448
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 32
               

               Conread position:
               64-448
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 83
               

               Conread position:
               64-453
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               255
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               240, 32
               

               Conread position:
               64-459
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 24
               

               Conread position:
               65-429
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               65-456
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               65-463
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               258
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               65-469
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               65-470
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 244
               

               Conread position:
               65-471
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               65-473
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               14, 20
               

               Conread position:
               65-474
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               69-447
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 224
               

               Conread position:
               73-427
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               8, 15
               

               Conread position:
               73-432
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               237
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               338, 333
               

               Conread position:
               73-434
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               86, 64
               

               Conread position:
               73-450
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               66, 75
               

               Conread position:
               73-471
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 15
               

               Conread position:
               80-385
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               77, 7
               

               Conread position:
               80-448
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               245
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               80-463
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               248
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               226, 7
               

               Conread position:
               80-472
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               11, 80
               

               Conread position:
               80-474
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               85-459
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               250
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               14, 74
               

               Conread position:
               92-472
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 226
               

               Conread position:
               92-474
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               241
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               69, 49
               

               Conread position:
               93-449
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               160, 0
               

               Conread position:
               94-463
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               229
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               35, 65
               

               Conread position:
               94-468
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 224
               

               Conread position:
               94-471
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 362
               

               Conread position:
               95-348
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-430
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               95-436
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-447
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               42, 64
               

               Conread position:
               95-448
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               233
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               51, 55
               

               Conread position:
               95-463
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               45, 55
               

               Conread position:
               95-463
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               42, 54
               

               Conread position:
               95-463
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               234
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               41, 50
               

               Conread position:
               95-463
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-471
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-471
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               61, 41
               

               Conread position:
               95-471
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               242
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-474
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-474
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 188
               

               Conread position:
               95-477
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 40
               

               Conread position:
               95-477
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               246
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               277, 259
               

               Conread position:
               96-474
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               255
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               39, 56
               

               Conread position:
               96-474
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               245
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               98-456
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               213, 207
               

               Conread position:
               98-474
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               27, 47
               

               Conread position:
               98-478
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               229
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               45, 9
               

               Conread position:
               104-472
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               55, 34
               

               Conread position:
               110-473
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               239
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               110-474
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               115-465
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               33, 23
               

               Conread position:
               116-463
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               21, 33
               

               Conread position:
               150-475
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               216
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               32, 40
               

               Conread position:
               158-456
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               256, 0
               

               Conread position:
               163-474
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               176-448
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               176-474
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               179-474
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.