Cow genome map

Conread name: Ss1.1-rfcc08b_f3.5

Conread position: 3-436
Cow position:
Alignm length: 440
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 41

Conread position: 10-448
Cow position:
Alignm length: 443
Alignm identity: 276
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 10, 33

Conread position: 10-472
Cow position:
Alignm length: 464
Alignm identity: 287
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 56

Conread position: 10-472
Cow position:
Alignm length: 464
Alignm identity: 281
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 66, 43

Conread position: 10-473
Cow position:
Alignm length: 467
Alignm identity: 290
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 47, 31

Conread position: 10-474
Cow position:
Alignm length: 470
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 50

Conread position: 10-474
Cow position:
Alignm length: 466
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 32

Conread position: 10-474
Cow position:
Alignm length: 467
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 31

Conread position: 10-475
Cow position:
Alignm length: 466
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-475
Cow position:
Alignm length: 466
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-266
Cow position:
Alignm length: 257
Alignm identity: 174
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 49, 31

Conread position: 11-266
Cow position:
Alignm length: 257
Alignm identity: 167
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 31

Conread position: 11-331
Cow position:
Alignm length: 322
Alignm identity: 210
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 45, 31

Conread position: 11-342
Cow position:
Alignm length: 333
Alignm identity: 216
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 70, 77

Conread position: 11-345
Cow position:
Alignm length: 335
Alignm identity: 222
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 11-423
Cow position:
Alignm length: 415
Alignm identity: 256
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 44, 31

Conread position: 11-469
Cow position:
Alignm length: 461
Alignm identity: 289
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 65, 30

Conread position: 11-472
Cow position:
Alignm length: 463
Alignm identity: 286
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 65, 30

Conread position: 11-474
Cow position:
Alignm length: 465
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 86

Conread position: 12-479
Cow position:
Alignm length: 469
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 43

Conread position: 29-474
Cow position:
Alignm length: 448
Alignm identity: 284
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 71, 32

Conread position: 30-468
Cow position:
Alignm length: 440
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 262

Conread position: 41-266
Cow position:
Alignm length: 227
Alignm identity: 147
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 41-438
Cow position:
Alignm length: 403
Alignm identity: 243
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 35, 48

Conread position: 41-447
Cow position:
Alignm length: 411
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 95

Conread position: 41-464
Cow position:
Alignm length: 426
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 45

Conread position: 41-469
Cow position:
Alignm length: 430
Alignm identity: 273
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 16, 420

Conread position: 41-469
Cow position:
Alignm length: 430
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 420

Conread position: 41-479
Cow position:
Alignm length: 441
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 420

Conread position: 42-438
Cow position:
Alignm length: 399
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 19

Conread position: 42-458
Cow position:
Alignm length: 421
Alignm identity: 268
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 21, 47

Conread position: 42-464
Cow position:
Alignm length: 426
Alignm identity: 275
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 22, 104

Conread position: 42-472
Cow position:
Alignm length: 432
Alignm identity: 265
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 6, 0

Conread position: 42-473
Cow position:
Alignm length: 436
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 38

Conread position: 53-474
Cow position:
Alignm length: 428
Alignm identity: 277
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 13, 86

Conread position: 56-448
Cow position:
Alignm length: 393
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 59-456
Cow position:
Alignm length: 403
Alignm identity: 262
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 42, 5

Conread position: 62-470
Cow position:
Alignm length: 412
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 26

Conread position: 63-435
Cow position:
Alignm length: 373
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 63-472
Cow position:
Alignm length: 410
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 63-472
Cow position:
Alignm length: 410
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 64-474
Cow position:
Alignm length: 411
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 64-474
Cow position:
Alignm length: 411
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 65-463
Cow position:
Alignm length: 400
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 23

Conread position: 65-468
Cow position:
Alignm length: 405
Alignm identity: 253
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 14, 23

Conread position: 65-470
Cow position:
Alignm length: 406
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 67-463
Cow position:
Alignm length: 399
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 21

Conread position: 67-463
Cow position:
Alignm length: 414
Alignm identity: 240
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 293, 0

Conread position: 73-435
Cow position:
Alignm length: 363
Alignm identity: 230
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 73-468
Cow position:
Alignm length: 396
Alignm identity: 253
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 73-470
Cow position:
Alignm length: 399
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 15

Conread position: 73-474
Cow position:
Alignm length: 404
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 15

Conread position: 73-474
Cow position:
Alignm length: 404
Alignm identity: 241
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 70, 11

Conread position: 74-433
Cow position:
Alignm length: 361
Alignm identity: 240
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 7, 14

Conread position: 74-434
Cow position:
Alignm length: 365
Alignm identity: 240
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 7, 14

Conread position: 74-456
Cow position:
Alignm length: 385
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 71

Conread position: 74-462
Cow position:
Alignm length: 391
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 242

Conread position: 74-470
Cow position:
Alignm length: 398
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 135

Conread position: 74-474
Cow position:
Alignm length: 404
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 14

Conread position: 74-474
Cow position:
Alignm length: 402
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 71

Conread position: 74-475
Cow position:
Alignm length: 404
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 151

Conread position: 80-456
Cow position:
Alignm length: 382
Alignm identity: 237
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 161, 7

Conread position: 80-469
Cow position:
Alignm length: 392
Alignm identity: 256
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 72, 11

Conread position: 80-474
Cow position:
Alignm length: 397
Alignm identity: 247
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 325, 7

Conread position: 84-355
Cow position:
Alignm length: 273
Alignm identity: 177
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 139, 148

Conread position: 87-456
Cow position:
Alignm length: 375
Alignm identity: 239
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 72, 57

Conread position: 87-456
Cow position:
Alignm length: 371
Alignm identity: 223
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 233, 207

Conread position: 87-472
Cow position:
Alignm length: 390
Alignm identity: 248
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 61, 51

Conread position: 93-469
Cow position:
Alignm length: 379
Alignm identity: 244
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 55, 36

Conread position: 93-474
Cow position:
Alignm length: 384
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 45

Conread position: 94-468
Cow position:
Alignm length: 380
Alignm identity: 239
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 61, 44

Conread position: 94-473
Cow position:
Alignm length: 381
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 115

Conread position: 94-473
Cow position:
Alignm length: 381
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 115

Conread position: 95-436
Cow position:
Alignm length: 343
Alignm identity: 215
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 70, 52

Conread position: 95-448
Cow position:
Alignm length: 357
Alignm identity: 218
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 39, 64

Conread position: 95-464
Cow position:
Alignm length: 373
Alignm identity: 235
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 62, 44

Conread position: 95-469
Cow position:
Alignm length: 375
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 95-472
Cow position:
Alignm length: 378
Alignm identity: 244
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 95-472
Cow position:
Alignm length: 383
Alignm identity: 234
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 48, 64

Conread position: 95-474
Cow position:
Alignm length: 381
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 198

Conread position: 95-474
Cow position:
Alignm length: 381
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 198

Conread position: 95-474
Cow position:
Alignm length: 385
Alignm identity: 237
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 71, 42

Conread position: 95-475
Cow position:
Alignm length: 384
Alignm identity: 246
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 70, 52

Conread position: 97-432
Cow position:
Alignm length: 336
Alignm identity: 223
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 97-442
Cow position:
Alignm length: 346
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 97-463
Cow position:
Alignm length: 370
Alignm identity: 234
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 40, 8

Conread position: 98-447
Cow position:
Alignm length: 350
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 98-448
Cow position:
Alignm length: 355
Alignm identity: 230
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 39, 45

Conread position: 98-468
Cow position:
Alignm length: 373
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 51

Conread position: 98-473
Cow position:
Alignm length: 376
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 104-424
Cow position:
Alignm length: 324
Alignm identity: 213
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 53, 42

Conread position: 104-456
Cow position:
Alignm length: 357
Alignm identity: 232
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 24, 41

Conread position: 104-463
Cow position:
Alignm length: 362
Alignm identity: 238
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 53, 42

Conread position: 104-469
Cow position:
Alignm length: 371
Alignm identity: 241
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 24, 41

Conread position: 104-472
Cow position:
Alignm length: 371
Alignm identity: 240
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 33, 41

Conread position: 110-435
Cow position:
Alignm length: 328
Alignm identity: 216
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 44, 36

Conread position: 110-462
Cow position:
Alignm length: 353
Alignm identity: 227
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 110-471
Cow position:
Alignm length: 362
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 116-463
Cow position:
Alignm length: 349
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 31

Conread position: 118-472
Cow position:
Alignm length: 358
Alignm identity: 220
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 23

Conread position: 138-466
Cow position:
Alignm length: 329
Alignm identity: 177
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 314, 0

Conread position: 158-469
Cow position:
Alignm length: 313
Alignm identity: 197
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 168, 148

Conread position: 159-473
Cow position:
Alignm length: 315
Alignm identity: 205
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 172-471
Cow position:
Alignm length: 300
Alignm identity: 187
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 182-462
Cow position:
Alignm length: 283
Alignm identity: 183
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 120, 134

Conread position: 182-472
Cow position:
Alignm length: 293
Alignm identity: 187
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 120, 130

Conread position: 193-474
Cow position:
Alignm length: 282
Alignm identity: 180
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 212-479
Cow position:
Alignm length: 269
Alignm identity: 168
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 259, 0

Conread position: 241-471
Cow position:
Alignm length: 231
Alignm identity: 147
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 325-474
Cow position:
Alignm length: 150
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.