Cow genome map
Conread name: | Ss1.1-rfcc08b_f3.5 |
Conread position: | 10-474 |
Cow position: | chr23:24560638-24560174 (view UCSC Genome Browser custom track) |
Alignm length: | 466 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 31 |
Conread position: | 10-474 |
Cow position: | chr23:25626450-25626911 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 0 |
Conread position: | 11-273 |
Cow position: | chr23:24654118-24654380 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 176 |
Alignm E-value: | 5e-31 |
Alignm gaps (pig, cow): | 54, 31 |
Conread position: | 11-404 |
Cow position: | chr23:24522567-24522174 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 254 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 54, 30 |
Conread position: | 11-448 |
Cow position: | chr23:25698571-25698134 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 271 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 64, 31 |
Conread position: | 11-463 |
Cow position: | chr23:24547161-24546709 (view UCSC Genome Browser custom track) |
Alignm length: | 456 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 30 |
Conread position: | 11-471 |
Cow position: | chr23:24522732-24522275 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 299 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 123, 131 |
Conread position: | 11-472 |
Cow position: | chr23:25626031-25626491 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 284 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 34, 24 |
Conread position: | 13-456 |
Cow position: | chr23:24547328-24546884 (view UCSC Genome Browser custom track) |
Alignm length: | 447 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 128 |
Conread position: | 37-456 |
Cow position: | chr23:25626393-25626809 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 270 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 102, 113 |
Conread position: | 41-364 |
Cow position: | chr23:24639750-24640074 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 210 |
Alignm E-value: | 6e-33 |
Alignm gaps (pig, cow): | 34, 48 |
Conread position: | 41-429 |
Cow position: | chr23:24535847-24535458 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 248 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 41-439 |
Cow position: | chr23:24560524-24560125 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 41-469 |
Cow position: | chr23:24639582-24640010 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 6, 420 |
Conread position: | 41-479 |
Cow position: | chr23:24639498-24639936 (view UCSC Genome Browser custom track) |
Alignm length: | 442 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 6, 15 |
Conread position: | 42-457 |
Cow position: | chr23:25626646-25627063 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 47 |
Conread position: | 42-468 |
Cow position: | chr23:24560691-24560264 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 42-472 |
Cow position: | chr23:25660183-25660613 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 19 |
Conread position: | 42-473 |
Cow position: | chr23:24639248-24639679 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 144 |
Conread position: | 42-475 |
Cow position: | chr23:25626313-25626744 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 275 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 34, 274 |
Conread position: | 44-471 |
Cow position: | chr23:24560856-24560429 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 33 |
Conread position: | 46-440 |
Cow position: | chr23:25724091-25723698 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 15 |
Conread position: | 48-477 |
Cow position: | chr23:25660272-25660702 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 41 |
Conread position: | 62-437 |
Cow position: | chr23:25660371-25660746 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 15 |
Conread position: | 62-472 |
Cow position: | chr23:25698688-25698278 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 271 |
Alignm E-value: | 7.00649e-45 |
Alignm gaps (pig, cow): | 73, 79 |
Conread position: | 64-370 |
Cow position: | chr23:24626446-24626750 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 213 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 17, 24 |
Conread position: | 64-473 |
Cow position: | chr23:25626000-25626409 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 81 |
Conread position: | 64-474 |
Cow position: | chr23:24639438-24639848 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 64-474 |
Cow position: | chr23:25626252-25626659 (view UCSC Genome Browser custom track) |
Alignm length: | 412 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 277, 287 |
Conread position: | 65-331 |
Cow position: | chr23:24546939-24546673 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 174 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 151, 144 |
Conread position: | 65-419 |
Cow position: | chr23:24654088-24654441 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 237 |
Alignm E-value: | 4.99997e-41 |
Alignm gaps (pig, cow): | 23, 12 |
Conread position: | 65-454 |
Cow position: | chr23:24535906-24535517 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 65-463 |
Cow position: | chr23:25698601-25698203 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 65-468 |
Cow position: | chr23:24535990-24535587 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 23 |
Conread position: | 65-474 |
Cow position: | chr23:24626279-24626688 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 19 |
Conread position: | 65-478 |
Cow position: | chr23:24560751-24560338 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 68-471 |
Cow position: | chr23:25724154-25723750 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 261 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 38, 0 |
Conread position: | 69-439 |
Cow position: | chr23:24626367-24626736 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 358, 0 |
Conread position: | 73-418 |
Cow position: | chr23:25698425-25698080 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 230 |
Alignm E-value: | 5e-30 |
Alignm gaps (pig, cow): | 8, 15 |
Conread position: | 73-435 |
Cow position: | chr23:24547015-24546653 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 238 |
Alignm E-value: | 7.00649e-45 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 73-438 |
Cow position: | chr23:24639699-24640064 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 244 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 76, 63 |
Conread position: | 74-458 |
Cow position: | chr23:25626595-25626977 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 376, 0 |
Conread position: | 84-475 |
Cow position: | chr23:24547172-24546781 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 366, 372 |
Conread position: | 86-474 |
Cow position: | chr23:25626188-25626578 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 51 |
Conread position: | 92-448 |
Cow position: | chr23:24522817-24522466 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 224 |
Alignm E-value: | 5e-31 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 93-474 |
Cow position: | chr23:25625945-25626326 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 114 |
Conread position: | 95-472 |
Cow position: | chr23:24547329-24546952 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 40 |
Conread position: | 95-474 |
Cow position: | chr23:25660152-25660531 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 238, 234 |
Conread position: | 95-477 |
Cow position: | chr23:24522567-24522185 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 212, 221 |
Conread position: | 97-467 |
Cow position: | chr23:24654036-24654406 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 60 |
Conread position: | 97-474 |
Cow position: | chr23:24639387-24639764 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 43 |
Conread position: | 101-255 |
Cow position: | chr23:25723619-25723465 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 109 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 102-424 |
Cow position: | chr23:24521970-24521653 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 203 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 189, 208 |
Conread position: | 104-469 |
Cow position: | chr23:24639226-24639591 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 244 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 155, 163 |
Conread position: | 105-474 |
Cow position: | chr23:24560879-24560510 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 119-475 |
Cow position: | chr23:24536104-24535748 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 236 |
Alignm E-value: | 4.99997e-41 |
Alignm gaps (pig, cow): | 16, 34 |
Conread position: | 158-474 |
Cow position: | chr23:25698676-25698360 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 208 |
Alignm E-value: | 5e-31 |
Alignm gaps (pig, cow): | 58, 64 |
Conread position: | 159-480 |
Cow position: | chr23:24639197-24639517 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 212 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 184, 192 |
Conread position: | 199-474 |
Cow position: | chr23:25724106-25723831 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 185 |
Alignm E-value: | 9e-36 |
Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.