Cow genome map

Conread name: Ss1.1-rfcc08b_f3.5

Conread position: 10-474
Cow position: chr23:24560638-24560174 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 31

Conread position: 10-474
Cow position: chr23:25626450-25626911 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 11-273
Cow position: chr23:24654118-24654380 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 176
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 54, 31

Conread position: 11-404
Cow position: chr23:24522567-24522174 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 254
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 54, 30

Conread position: 11-448
Cow position: chr23:25698571-25698134 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 271
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 64, 31

Conread position: 11-463
Cow position: chr23:24547161-24546709 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 30

Conread position: 11-471
Cow position: chr23:24522732-24522275 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 299
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 123, 131

Conread position: 11-472
Cow position: chr23:25626031-25626491 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 284
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 34, 24

Conread position: 13-456
Cow position: chr23:24547328-24546884 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 128

Conread position: 37-456
Cow position: chr23:25626393-25626809 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 270
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 102, 113

Conread position: 41-364
Cow position: chr23:24639750-24640074 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 210
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 34, 48

Conread position: 41-429
Cow position: chr23:24535847-24535458 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 248
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 23, 0

Conread position: 41-439
Cow position: chr23:24560524-24560125 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 41-469
Cow position: chr23:24639582-24640010 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 420

Conread position: 41-479
Cow position: chr23:24639498-24639936 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 15

Conread position: 42-457
Cow position: chr23:25626646-25627063 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 47

Conread position: 42-468
Cow position: chr23:24560691-24560264 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 42-472
Cow position: chr23:25660183-25660613 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 19

Conread position: 42-473
Cow position: chr23:24639248-24639679 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 144

Conread position: 42-475
Cow position: chr23:25626313-25626744 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 275
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 34, 274

Conread position: 44-471
Cow position: chr23:24560856-24560429 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 33

Conread position: 46-440
Cow position: chr23:25724091-25723698 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 15

Conread position: 48-477
Cow position: chr23:25660272-25660702 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 41

Conread position: 62-437
Cow position: chr23:25660371-25660746 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 15

Conread position: 62-472
Cow position: chr23:25698688-25698278 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 271
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 73, 79

Conread position: 64-370
Cow position: chr23:24626446-24626750 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 213
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 17, 24

Conread position: 64-473
Cow position: chr23:25626000-25626409 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 81

Conread position: 64-474
Cow position: chr23:24639438-24639848 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 64-474
Cow position: chr23:25626252-25626659 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 287

Conread position: 65-331
Cow position: chr23:24546939-24546673 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 174
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 151, 144

Conread position: 65-419
Cow position: chr23:24654088-24654441 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 237
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 23, 12

Conread position: 65-454
Cow position: chr23:24535906-24535517 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 65-463
Cow position: chr23:25698601-25698203 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 65-468
Cow position: chr23:24535990-24535587 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 23

Conread position: 65-474
Cow position: chr23:24626279-24626688 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 19

Conread position: 65-478
Cow position: chr23:24560751-24560338 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 68-471
Cow position: chr23:25724154-25723750 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 261
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 0

Conread position: 69-439
Cow position: chr23:24626367-24626736 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 0

Conread position: 73-418
Cow position: chr23:25698425-25698080 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 230
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 8, 15

Conread position: 73-435
Cow position: chr23:24547015-24546653 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 238
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 73-438
Cow position: chr23:24639699-24640064 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 244
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 76, 63

Conread position: 74-458
Cow position: chr23:25626595-25626977 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 0

Conread position: 84-475
Cow position: chr23:24547172-24546781 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 372

Conread position: 86-474
Cow position: chr23:25626188-25626578 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 51

Conread position: 92-448
Cow position: chr23:24522817-24522466 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 224
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 27, 0

Conread position: 93-474
Cow position: chr23:25625945-25626326 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 114

Conread position: 95-472
Cow position: chr23:24547329-24546952 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 40

Conread position: 95-474
Cow position: chr23:25660152-25660531 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 234

Conread position: 95-477
Cow position: chr23:24522567-24522185 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 221

Conread position: 97-467
Cow position: chr23:24654036-24654406 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 60

Conread position: 97-474
Cow position: chr23:24639387-24639764 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 43

Conread position: 101-255
Cow position: chr23:25723619-25723465 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 109
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 102-424
Cow position: chr23:24521970-24521653 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 203
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 189, 208

Conread position: 104-469
Cow position: chr23:24639226-24639591 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 244
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 155, 163

Conread position: 105-474
Cow position: chr23:24560879-24560510 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 119-475
Cow position: chr23:24536104-24535748 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 236
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 16, 34

Conread position: 158-474
Cow position: chr23:25698676-25698360 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 208
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 58, 64

Conread position: 159-480
Cow position: chr23:24639197-24639517 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 212
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 184, 192

Conread position: 199-474
Cow position: chr23:25724106-25723831 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.