Cow genome map

Conread name: Ss1.1-rfcc08b_f3.5

Conread position: 10-419
Cow position:
Alignm length: 411
Alignm identity: 266
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 55, 31

Conread position: 11-419
Cow position:
Alignm length: 413
Alignm identity: 257
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 64, 30

Conread position: 11-463
Cow position:
Alignm length: 458
Alignm identity: 290
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 61, 50

Conread position: 11-463
Cow position:
Alignm length: 457
Alignm identity: 277
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 55, 29

Conread position: 11-474
Cow position:
Alignm length: 468
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 30

Conread position: 30-456
Cow position:
Alignm length: 428
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 31

Conread position: 40-419
Cow position:
Alignm length: 381
Alignm identity: 233
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 34, 21

Conread position: 41-432
Cow position:
Alignm length: 394
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 325

Conread position: 41-447
Cow position:
Alignm length: 408
Alignm identity: 262
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 26, 0

Conread position: 41-472
Cow position:
Alignm length: 435
Alignm identity: 266
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 7, 268

Conread position: 42-439
Cow position:
Alignm length: 400
Alignm identity: 244
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 22, 276

Conread position: 47-378
Cow position:
Alignm length: 334
Alignm identity: 206
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 18, 177

Conread position: 47-479
Cow position:
Alignm length: 442
Alignm identity: 265
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 41

Conread position: 48-436
Cow position:
Alignm length: 393
Alignm identity: 246
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 17, 353

Conread position: 55-456
Cow position:
Alignm length: 406
Alignm identity: 264
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 41, 26

Conread position: 56-464
Cow position:
Alignm length: 415
Alignm identity: 271
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 44, 23

Conread position: 56-471
Cow position:
Alignm length: 418
Alignm identity: 265
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 32, 21

Conread position: 62-340
Cow position:
Alignm length: 280
Alignm identity: 174
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 98, 87

Conread position: 62-462
Cow position:
Alignm length: 405
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 149

Conread position: 62-478
Cow position:
Alignm length: 418
Alignm identity: 262
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 264, 242

Conread position: 63-268
Cow position:
Alignm length: 207
Alignm identity: 141
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 6, 12

Conread position: 64-400
Cow position:
Alignm length: 340
Alignm identity: 210
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 133, 0

Conread position: 65-327
Cow position:
Alignm length: 265
Alignm identity: 168
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 16, 23

Conread position: 65-440
Cow position:
Alignm length: 378
Alignm identity: 243
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 92, 83

Conread position: 65-474
Cow position:
Alignm length: 413
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 23

Conread position: 65-474
Cow position:
Alignm length: 410
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 66-448
Cow position:
Alignm length: 385
Alignm identity: 246
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 14, 31

Conread position: 69-424
Cow position:
Alignm length: 356
Alignm identity: 218
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 69-432
Cow position:
Alignm length: 364
Alignm identity: 223
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 69-447
Cow position:
Alignm length: 380
Alignm identity: 229
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 27, 12

Conread position: 69-468
Cow position:
Alignm length: 404
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 69-468
Cow position:
Alignm length: 402
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 69

Conread position: 71-447
Cow position:
Alignm length: 382
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 67

Conread position: 73-425
Cow position:
Alignm length: 355
Alignm identity: 218
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 57, 72

Conread position: 73-441
Cow position:
Alignm length: 369
Alignm identity: 241
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 73-462
Cow position:
Alignm length: 391
Alignm identity: 246
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 299, 19

Conread position: 73-464
Cow position:
Alignm length: 393
Alignm identity: 245
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 8, 15

Conread position: 73-472
Cow position:
Alignm length: 401
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 15

Conread position: 74-459
Cow position:
Alignm length: 388
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 0

Conread position: 74-463
Cow position:
Alignm length: 391
Alignm identity: 236
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 226, 219

Conread position: 74-469
Cow position:
Alignm length: 399
Alignm identity: 258
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 9, 86

Conread position: 84-462
Cow position:
Alignm length: 379
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 84-467
Cow position:
Alignm length: 387
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 232

Conread position: 87-463
Cow position:
Alignm length: 379
Alignm identity: 244
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 117, 87

Conread position: 87-479
Cow position:
Alignm length: 393
Alignm identity: 247
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 387, 0

Conread position: 88-468
Cow position:
Alignm length: 381
Alignm identity: 242
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 297, 0

Conread position: 90-472
Cow position:
Alignm length: 383
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 92-447
Cow position:
Alignm length: 358
Alignm identity: 218
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 35, 52

Conread position: 93-447
Cow position:
Alignm length: 356
Alignm identity: 229
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 234, 229

Conread position: 94-378
Cow position:
Alignm length: 285
Alignm identity: 186
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 23, 0

Conread position: 94-456
Cow position:
Alignm length: 364
Alignm identity: 230
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 40, 53

Conread position: 94-459
Cow position:
Alignm length: 370
Alignm identity: 225
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 63, 36

Conread position: 95-274
Cow position:
Alignm length: 182
Alignm identity: 135
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 54, 35

Conread position: 95-353
Cow position:
Alignm length: 261
Alignm identity: 168
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 28, 41

Conread position: 95-361
Cow position:
Alignm length: 268
Alignm identity: 173
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 87, 95

Conread position: 95-419
Cow position:
Alignm length: 326
Alignm identity: 214
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 109, 103

Conread position: 95-425
Cow position:
Alignm length: 334
Alignm identity: 210
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 39

Conread position: 95-438
Cow position:
Alignm length: 346
Alignm identity: 226
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 39, 54

Conread position: 95-448
Cow position:
Alignm length: 355
Alignm identity: 227
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 35, 53

Conread position: 95-448
Cow position:
Alignm length: 354
Alignm identity: 225
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 95-457
Cow position:
Alignm length: 363
Alignm identity: 226
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 95-457
Cow position:
Alignm length: 365
Alignm identity: 226
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 53, 43

Conread position: 95-463
Cow position:
Alignm length: 371
Alignm identity: 222
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 61, 44

Conread position: 95-464
Cow position:
Alignm length: 370
Alignm identity: 229
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 95-464
Cow position:
Alignm length: 372
Alignm identity: 236
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 55, 39

Conread position: 95-471
Cow position:
Alignm length: 377
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 95-472
Cow position:
Alignm length: 380
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 43

Conread position: 95-474
Cow position:
Alignm length: 380
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 98-340
Cow position:
Alignm length: 244
Alignm identity: 161
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 32, 42

Conread position: 98-464
Cow position:
Alignm length: 368
Alignm identity: 232
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 125, 134

Conread position: 103-379
Cow position:
Alignm length: 282
Alignm identity: 183
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 31, 47

Conread position: 103-477
Cow position:
Alignm length: 378
Alignm identity: 238
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 162, 155

Conread position: 104-447
Cow position:
Alignm length: 345
Alignm identity: 209
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 33, 41

Conread position: 105-441
Cow position:
Alignm length: 339
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 211

Conread position: 105-469
Cow position:
Alignm length: 365
Alignm identity: 234
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 355, 0

Conread position: 109-469
Cow position:
Alignm length: 361
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 0

Conread position: 110-456
Cow position:
Alignm length: 349
Alignm identity: 225
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 49, 25

Conread position: 111-468
Cow position:
Alignm length: 359
Alignm identity: 223
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 72, 79

Conread position: 114-462
Cow position:
Alignm length: 351
Alignm identity: 219
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 303, 115

Conread position: 114-463
Cow position:
Alignm length: 352
Alignm identity: 227
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 47, 60

Conread position: 115-448
Cow position:
Alignm length: 336
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 23

Conread position: 115-462
Cow position:
Alignm length: 353
Alignm identity: 225
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 30

Conread position: 116-462
Cow position:
Alignm length: 347
Alignm identity: 215
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 119-437
Cow position:
Alignm length: 323
Alignm identity: 217
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 27, 18

Conread position: 119-448
Cow position:
Alignm length: 332
Alignm identity: 220
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 29, 12

Conread position: 119-458
Cow position:
Alignm length: 342
Alignm identity: 210
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 150, 114

Conread position: 119-471
Cow position:
Alignm length: 353
Alignm identity: 234
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 18, 0

Conread position: 119-474
Cow position:
Alignm length: 359
Alignm identity: 227
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 155, 169

Conread position: 130-477
Cow position:
Alignm length: 353
Alignm identity: 226
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 29, 0

Conread position: 139-474
Cow position:
Alignm length: 338
Alignm identity: 207
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 149, 143

Conread position: 155-462
Cow position:
Alignm length: 309
Alignm identity: 188
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 88, 71

Conread position: 156-472
Cow position:
Alignm length: 317
Alignm identity: 191
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 157-448
Cow position:
Alignm length: 293
Alignm identity: 184
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 154, 62

Conread position: 157-478
Cow position:
Alignm length: 322
Alignm identity: 195
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 158-366
Cow position:
Alignm length: 209
Alignm identity: 138
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 191, 0

Conread position: 158-458
Cow position:
Alignm length: 301
Alignm identity: 185
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 158-463
Cow position:
Alignm length: 307
Alignm identity: 196
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 292, 298

Conread position: 158-468
Cow position:
Alignm length: 311
Alignm identity: 203
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 227, 0

Conread position: 158-474
Cow position:
Alignm length: 317
Alignm identity: 201
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 104, 0

Conread position: 162-383
Cow position:
Alignm length: 222
Alignm identity: 148
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 163-456
Cow position:
Alignm length: 294
Alignm identity: 199
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 9, 0

Conread position: 172-469
Cow position:
Alignm length: 299
Alignm identity: 198
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 114, 110

Conread position: 176-456
Cow position:
Alignm length: 283
Alignm identity: 177
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 111, 107

Conread position: 179-462
Cow position:
Alignm length: 284
Alignm identity: 177
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 179-475
Cow position:
Alignm length: 299
Alignm identity: 188
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 186, 192

Conread position: 179-475
Cow position:
Alignm length: 300
Alignm identity: 195
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 102, 106

Conread position: 182-424
Cow position:
Alignm length: 243
Alignm identity: 160
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 199-471
Cow position:
Alignm length: 273
Alignm identity: 188
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 202-479
Cow position:
Alignm length: 278
Alignm identity: 178
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 203-469
Cow position:
Alignm length: 268
Alignm identity: 173
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 122, 114

Conread position: 206-474
Cow position:
Alignm length: 273
Alignm identity: 180
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 41, 27

Conread position: 236-474
Cow position:
Alignm length: 240
Alignm identity: 171
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 42, 26

Conread position: 316-477
Cow position:
Alignm length: 162
Alignm identity: 118
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 340-476
Cow position:
Alignm length: 137
Alignm identity: 101
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.