Cow genome map
| Conread name: | Ss1.1-rfcc08b_f3.5 |
| Conread position: | 10-469 |
| Cow position: | chr28:7757583-7758042 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 11-433 |
| Cow position: | chr28:33210228-33210653 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 269 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 333, 0 |
| Conread position: | 11-434 |
| Cow position: | chr28:7758408-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 14-472 |
| Cow position: | chr28:9298485-9298942 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 18-464 |
| Cow position: | chr28:9252776-9253220 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 31-472 |
| Cow position: | chr28:11334201-11333760 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 280 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 256, 250 |
| Conread position: | 41-272 |
| Cow position: | chr28:9290448-9290679 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 42-439 |
| Cow position: | chr28:9298598-9298993 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 42-474 |
| Cow position: | chr28:7757699-7758131 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 42-474 |
| Cow position: | chr28:34673470-34673902 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 61-448 |
| Cow position: | chr28:7810556-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 62-474 |
| Cow position: | chr28:34696047-34696459 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 64-448 |
| Cow position: | chr28:9252903-9253288 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 65-463 |
| Cow position: | chr28:9299037-9299421 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 339, 149 |
| Conread position: | 71-396 |
| Cow position: | chr28:34696224-34696549 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 79, 67 |
| Conread position: | 71-474 |
| Cow position: | chr28:34696140-34696543 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 77, 67 |
| Conread position: | 72-464 |
| Cow position: | chr28:7757813-7758205 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 73-459 |
| Cow position: | chr28:7810326-7810705 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 208, 213 |
| Conread position: | 78-474 |
| Cow position: | chr28:34695811-34696207 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 175, 169 |
| Conread position: | 93-448 |
| Cow position: | chr28:9290250-9290603 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 93-474 |
| Cow position: | chr28:34695742-34696123 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-439 |
| Cow position: | chr28:9253270-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 41 |
| Conread position: | 94-444 |
| Cow position: | chr28:9299220-9299570 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-475 |
| Cow position: | chr28:9290086-9290463 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 11, 57 |
| Conread position: | 95-372 |
| Cow position: | chr28:9290419-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 95-426 |
| Cow position: | chr28:11333801-11333470 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-447 |
| Cow position: | chr28:7758408-7758760 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-462 |
| Cow position: | chr28:7757920-7758289 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 95-463 |
| Cow position: | chr28:9253019-9253387 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-464 |
| Cow position: | chr28:9253103-9253472 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-470 |
| Cow position: | chr28:11333885-11333510 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 119, 103 |
| Conread position: | 95-471 |
| Cow position: | chr28:9290172-9290542 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 95-474 |
| Cow position: | chr28:7758324-7758703 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-474 |
| Cow position: | chr28:9253187-9253566 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-474 |
| Cow position: | chr28:33210228-33210608 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 96-474 |
| Cow position: | chr28:11333968-11333590 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 97-474 |
| Cow position: | chr28:7757503-7757879 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 98-425 |
| Cow position: | chr28:7758007-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-449 |
| Cow position: | chr28:9298824-9299169 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 57, 33 |
| Conread position: | 102-474 |
| Cow position: | chr28:9252776-9253146 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 188, 112 |
| Conread position: | 104-474 |
| Cow position: | chr28:34673364-34673734 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 116, 128 |
| Conread position: | 106-453 |
| Cow position: | chr28:34679549-34679199 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 108-468 |
| Cow position: | chr28:7757429-7757789 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 236 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 108-474 |
| Cow position: | chr28:7757345-7757711 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 114-462 |
| Cow position: | chr28:7810283-7810622 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 119-468 |
| Cow position: | chr28:34673463-34673812 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 36, 40 |
| Conread position: | 157-474 |
| Cow position: | chr28:11334243-11333926 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 130, 124 |
| Conread position: | 158-478 |
| Cow position: | chr28:7810570-7810890 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 178-456 |
| Cow position: | chr28:33210227-33210505 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 89, 110 |
| Conread position: | 238-478 |
| Cow position: | chr28:7810248-7810479 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 264-476 |
| Cow position: | chr28:34673356-34673568 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 126, 147 |
Show alignments to all cow chromosomes.