Cow genome map


           Conread name:
           Ss1.1-rfcc08b_f3.5
        

               Conread position:
               10-469
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 31
               

               Conread position:
               11-433
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               269
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               333, 0
               

               Conread position:
               11-434
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               274
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               70, 76
               

               Conread position:
               14-472
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               290
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               12, 41
               

               Conread position:
               18-464
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               32, 41
               

               Conread position:
               31-472
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               280
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               256, 250
               

               Conread position:
               41-272
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               40, 47
               

               Conread position:
               42-439
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               31, 69
               

               Conread position:
               42-474
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 19
               

               Conread position:
               42-474
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               61-448
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               6, 21
               

               Conread position:
               62-474
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               262
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               85, 74
               

               Conread position:
               64-448
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               65-463
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               339, 149
               

               Conread position:
               71-396
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               79, 67
               

               Conread position:
               71-474
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               77, 67
               

               Conread position:
               72-464
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               9, 16
               

               Conread position:
               73-459
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               257
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               208, 213
               

               Conread position:
               78-474
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               175, 169
               

               Conread position:
               93-448
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               41, 52
               

               Conread position:
               93-474
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               94-439
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 41
               

               Conread position:
               94-444
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               94-475
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               11, 57
               

               Conread position:
               95-372
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               95-426
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               213
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-447
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-462
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               241
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               54, 40
               

               Conread position:
               95-463
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-464
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-470
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               250
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               119, 103
               

               Conread position:
               95-471
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               241
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               47, 38
               

               Conread position:
               95-474
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               213
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-474
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               95-474
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 41
               

               Conread position:
               96-474
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               245
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               97-474
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               247
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               98-425
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               213
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               102-449
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               57, 33
               

               Conread position:
               102-474
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               188, 112
               

               Conread position:
               104-474
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               116, 128
               

               Conread position:
               106-453
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               238
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               33, 48
               

               Conread position:
               108-468
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               236
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               108-474
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               30, 40
               

               Conread position:
               114-462
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               43, 22
               

               Conread position:
               119-468
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               226
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               36, 40
               

               Conread position:
               157-474
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               130, 124
               

               Conread position:
               158-478
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               178-456
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               89, 110
               

               Conread position:
               238-478
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               264-476
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               126, 147
               
Show alignments to all cow chromosomes.