Cow genome map

Conread name: Ss1.1-rfcc08b_f3.5

Conread position: 2-416
Cow position: chr8:46816958-46817374 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 260
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 12, 41

Conread position: 10-402
Cow position: chr8:45201605-45201997 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 245
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 71, 78

Conread position: 10-435
Cow position: chr8:48406707-48406280 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 270
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 55, 31

Conread position: 10-448
Cow position: chr8:46815959-46816398 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 281
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 18, 95

Conread position: 10-463
Cow position: chr8:45201521-45201975 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 41

Conread position: 11-448
Cow position: chr8:46816633-46817070 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 282
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 54, 30

Conread position: 11-474
Cow position: chr8:45201186-45201649 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 30

Conread position: 11-474
Cow position: chr8:46816129-46816592 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 30

Conread position: 11-480
Cow position: chr8:48406790-48406321 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-476
Cow position: chr8:48406957-48406493 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 76

Conread position: 15-463
Cow position: chr8:46816552-46817001 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 299
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 5, 27

Conread position: 29-449
Cow position: chr8:48407528-48407108 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 59

Conread position: 37-442
Cow position: chr8:48407184-48406779 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 51

Conread position: 41-463
Cow position: chr8:55581019-55581442 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 42-444
Cow position: chr8:46816915-46817318 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 264
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 11, 42

Conread position: 42-472
Cow position: chr8:45201300-45201731 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 47

Conread position: 62-476
Cow position: chr8:48407327-48406913 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 26

Conread position: 63-459
Cow position: chr8:48406822-48406424 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 250
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 389, 0

Conread position: 64-423
Cow position: chr8:48406569-48406201 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 237
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 218, 222

Conread position: 64-447
Cow position: chr8:46816350-46816733 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 64-448
Cow position: chr8:46816854-46817238 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 254
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 74, 102

Conread position: 64-449
Cow position: chr8:46816434-46816819 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 244
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 72, 81

Conread position: 64-474
Cow position: chr8:55581127-55581537 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 24

Conread position: 65-447
Cow position: chr8:46816771-46817153 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 251
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 87, 94

Conread position: 65-473
Cow position: chr8:48407408-48407000 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 253

Conread position: 70-447
Cow position: chr8:46816104-46816481 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 255
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 66, 75

Conread position: 71-478
Cow position: chr8:46816525-46816932 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 17

Conread position: 73-462
Cow position: chr8:55581304-55581693 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 250
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 8, 15

Conread position: 73-471
Cow position: chr8:55581220-55581618 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 254
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 8, 24

Conread position: 73-472
Cow position: chr8:48407232-48406833 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 15

Conread position: 74-442
Cow position: chr8:46816276-46816644 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 240
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 7, 14

Conread position: 80-474
Cow position: chr8:55580892-55581285 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 93-459
Cow position: chr8:45201016-45201384 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 0

Conread position: 94-474
Cow position: chr8:45201437-45201817 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 94-475
Cow position: chr8:45201521-45201902 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 95-436
Cow position: chr8:55581410-55581751 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 213
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 95-472
Cow position: chr8:48407546-48407169 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 95-472
Cow position: chr8:48407630-48407253 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 95-473
Cow position: chr8:48406958-48406580 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 245
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 45, 53

Conread position: 95-474
Cow position: chr8:45201102-45201481 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 106-479
Cow position: chr8:55580833-55581205 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 44

Conread position: 107-474
Cow position: chr8:55581002-55581369 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 110-474
Cow position: chr8:45200949-45201313 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 235
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 178, 172

Conread position: 193-474
Cow position: chr8:48407616-48407335 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 193
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 32, 16

Conread position: 197-463
Cow position: chr8:6958062-6957796 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 171
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 280-470
Cow position: chr8:6958063-6957873 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 127
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.