Cow genome map
| Conread name: | Ss1.1-rfcc08b_f3.5 |
| Conread position: | 11-362 |
| Cow position: | chrX:29045008-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 11-442 |
| Cow position: | chrX:25325083-25324652 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 280 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 11-478 |
| Cow position: | chrX:25325419-25324952 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-447 |
| Cow position: | chrX:25325332-25324899 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 20-468 |
| Cow position: | chrX:25324822-25324374 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 41-442 |
| Cow position: | chrX:25324718-25324316 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 41-444 |
| Cow position: | chrX:29045063-29044658 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 57 |
| Conread position: | 42-328 |
| Cow position: | chrX:29045713-29045426 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 56-465 |
| Cow position: | chrX:13826903-13826495 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 79, 94 |
| Conread position: | 64-269 |
| Cow position: | chrX:25310363-25310568 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 64-397 |
| Cow position: | chrX:25324526-25324197 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 73, 91 |
| Conread position: | 64-442 |
| Cow position: | chrX:25325702-25325324 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-449 |
| Cow position: | chrX:25324946-25324561 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 73, 81 |
| Conread position: | 64-472 |
| Cow position: | chrX:25310111-25310519 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 64-472 |
| Cow position: | chrX:29045207-29044799 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 392 |
| Conread position: | 65-472 |
| Cow position: | chrX:25309776-25310183 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 142 |
| Conread position: | 69-447 |
| Cow position: | chrX:25325529-25325151 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 83, 90 |
| Conread position: | 69-467 |
| Cow position: | chrX:29045286-29044887 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 69-472 |
| Cow position: | chrX:25309948-25310351 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 263 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 71-456 |
| Cow position: | chrX:25310034-25310419 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 83-443 |
| Cow position: | chrX:25325599-25325239 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 72, 76 |
| Conread position: | 93-472 |
| Cow position: | chrX:25309721-25310099 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 94-443 |
| Cow position: | chrX:29045744-29045397 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 320, 0 |
| Conread position: | 95-437 |
| Cow position: | chrX:25324579-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 160, 155 |
| Conread position: | 95-457 |
| Cow position: | chrX:25310226-25310587 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 95-471 |
| Cow position: | chrX:25309890-25310266 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 95-472 |
| Cow position: | chrX:29045092-29044715 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 95-474 |
| Cow position: | chrX:25325755-25325376 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 46, 50 |
| Conread position: | 97-478 |
| Cow position: | chrX:25325837-25325457 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 126, 132 |
| Conread position: | 104-448 |
| Cow position: | chrX:25324822-25324478 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 110-462 |
| Cow position: | chrX:13826933-13826581 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 103, 121 |
| Conread position: | 114-478 |
| Cow position: | chrX:29045325-29044961 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 156-447 |
| Cow position: | chrX:14181245-14180954 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-458 |
| Cow position: | chrX:14181329-14181027 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 159-385 |
| Cow position: | chrX:12627837-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 92, 86 |
| Conread position: | 164-469 |
| Cow position: | chrX:25309707-25310012 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 142, 152 |
| Conread position: | 164-469 |
| Cow position: | chrX:29045758-29045454 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 296, 0 |
| Conread position: | 234-469 |
| Cow position: | chrX:25309693-25309928 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.