Cow genome map
| Conread name: | Ss1.1-rfcc11b_a8.5 |
| Conread position: | 25-288 |
| Cow position: | chr12:36212722-36212464 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 25-320 |
| Cow position: | chr12:18467258-18466971 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 96, 49 |
| Conread position: | 25-325 |
| Cow position: | chr12:251374-251664 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 96, 48 |
| Conread position: | 25-344 |
| Cow position: | chr12:12295006-12294688 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 27-251 |
| Cow position: | chr12:22747672-22747464 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 27-344 |
| Cow position: | chr12:14213709-14214015 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 41-299 |
| Cow position: | chr12:35633045-35633303 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 66-328 |
| Cow position: | chr12:8137527-8137782 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 256, 11 |
| Conread position: | 68-344 |
| Cow position: | chr12:21252149-21252425 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 53, 70 |
| Conread position: | 76-344 |
| Cow position: | chr12:22593178-22592901 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 82-334 |
| Cow position: | chr12:33121811-33121563 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 242, 31 |
| Conread position: | 82-344 |
| Cow position: | chr12:23160472-23160745 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 40, 81 |
| Conread position: | 83-244 |
| Cow position: | chr12:35548715-35548876 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-251 |
| Cow position: | chr12:19872697-19872534 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 83-293 |
| Cow position: | chr12:1886931-1887137 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-295 |
| Cow position: | chr12:28834908-28835120 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 39, 69 |
| Conread position: | 83-302 |
| Cow position: | chr12:1106905-1106694 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 83 |
| Conread position: | 83-302 |
| Cow position: | chr12:27930340-27930556 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 83-304 |
| Cow position: | chr12:6442811-6443030 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 81 |
| Conread position: | 83-311 |
| Cow position: | chr12:1775502-1775735 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 90 |
| Conread position: | 83-311 |
| Cow position: | chr12:15775821-15775593 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-311 |
| Cow position: | chr12:42605763-42605987 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-325 |
| Cow position: | chr12:31331911-31332150 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 83-329 |
| Cow position: | chr12:2284416-2284179 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 83-329 |
| Cow position: | chr12:3717857-3718103 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-334 |
| Cow position: | chr12:757868-757624 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 83-334 |
| Cow position: | chr12:24030528-24030795 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-334 |
| Cow position: | chr12:30686158-30685909 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 32 |
| Conread position: | 83-344 |
| Cow position: | chr12:1404686-1404428 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 38, 83 |
| Conread position: | 83-344 |
| Cow position: | chr12:1407249-1406987 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 83-344 |
| Cow position: | chr12:3363358-3363098 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr12:11100661-11100403 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr12:12755742-12756003 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 83-344 |
| Cow position: | chr12:21201161-21200901 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 83-344 |
| Cow position: | chr12:22571260-22571004 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 185, 39 |
| Conread position: | 83-344 |
| Cow position: | chr12:24980098-24979842 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 33, 55 |
| Conread position: | 83-344 |
| Cow position: | chr12:24993554-24993815 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr12:27853534-27853803 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 90 |
| Conread position: | 83-344 |
| Cow position: | chr12:33926106-33926367 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr12:37561422-37561164 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr12:42857113-42857370 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 83-378 |
| Cow position: | chr12:21091322-21091601 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-379 |
| Cow position: | chr12:21430376-21430079 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 84-312 |
| Cow position: | chr12:25095127-25095353 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 84-334 |
| Cow position: | chr12:43054067-43054309 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 38, 61 |
| Conread position: | 84-344 |
| Cow position: | chr12:20460810-20461066 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 85-331 |
| Cow position: | chr12:32655966-32655723 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 61, 36 |
| Conread position: | 85-334 |
| Cow position: | chr12:3179783-3179540 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 36, 57 |
| Conread position: | 85-343 |
| Cow position: | chr12:15949392-15949648 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 86-330 |
| Cow position: | chr12:22565480-22565236 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 89-306 |
| Cow position: | chr12:4784273-4784491 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 89-334 |
| Cow position: | chr12:8675667-8675910 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 53 |
| Conread position: | 89-334 |
| Cow position: | chr12:24432477-24432717 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 89-342 |
| Cow position: | chr12:23138910-23139161 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 89-344 |
| Cow position: | chr12:34175764-34175510 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 89-344 |
| Cow position: | chr12:41594453-41594191 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 31, 183 |
| Conread position: | 93-334 |
| Cow position: | chr12:29446132-29445901 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 72 |
| Conread position: | 93-345 |
| Cow position: | chr12:20845317-20845066 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 123-326 |
| Cow position: | chr12:21129410-21129213 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 127-363 |
| Cow position: | chr12:6549280-6549053 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 193, 40 |
| Conread position: | 133-325 |
| Cow position: | chr12:3210337-3210148 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 83, 29 |
| Conread position: | 157-344 |
| Cow position: | chr12:21427239-21427426 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 167, 180 |
| Conread position: | 164-329 |
| Cow position: | chr12:25150851-25151017 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 165-337 |
| Cow position: | chr12:8143278-8143443 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 158, 122 |
| Conread position: | 185-334 |
| Cow position: | chr12:4396913-4397063 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 137, 0 |
Show alignments to all cow chromosomes.