Cow genome map

Conread name: Ss1.1-rfcc11b_a8.5

Conread position: 14-343
Cow position: chr17:20404788-20404460 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 233
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 9, 57

Conread position: 24-331
Cow position: chr17:5999136-5999439 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 97, 43

Conread position: 25-241
Cow position: chr17:2170761-2170549 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 25, 43

Conread position: 25-315
Cow position: chr17:20097966-20098238 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 11, 17

Conread position: 25-344
Cow position: chr17:15808322-15808008 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 230
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 24, 54

Conread position: 25-345
Cow position: chr17:147281-146960 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 24, 54

Conread position: 25-480
Cow position: chr17:16897746-16898186 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 301
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 96, 24

Conread position: 26-306
Cow position: chr17:14233256-14233532 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 194
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 116

Conread position: 26-331
Cow position: chr17:8204276-8203989 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 22, 52

Conread position: 26-344
Cow position: chr17:20490659-20490360 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 231
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 18, 53

Conread position: 27-232
Cow position: chr17:40646-40452 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 94, 14

Conread position: 27-293
Cow position: chr17:15438139-15437885 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 94, 14

Conread position: 41-345
Cow position: chr17:21420279-21419985 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 215
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 80, 34

Conread position: 47-334
Cow position: chr17:4084345-4084072 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 75, 28

Conread position: 71-344
Cow position: chr17:15853015-15852745 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 18, 62

Conread position: 82-296
Cow position: chr17:240591-240374 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 15, 58

Conread position: 82-334
Cow position: chr17:8365906-8365647 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 39, 7

Conread position: 83-265
Cow position: chr17:13418699-13418517 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 55

Conread position: 83-293
Cow position: chr17:41412147-41411939 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 19, 38

Conread position: 83-314
Cow position: chr17:1655455-1655682 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 38, 78

Conread position: 83-325
Cow position: chr17:253116-252879 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 54, 0

Conread position: 83-325
Cow position: chr17:26346964-26347200 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 83-330
Cow position: chr17:43146276-43146523 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 38, 82

Conread position: 83-331
Cow position: chr17:14214738-14214984 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 38, 55

Conread position: 83-334
Cow position: chr17:1563533-1563285 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 241, 42

Conread position: 83-334
Cow position: chr17:2264484-2264236 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 38, 55

Conread position: 83-334
Cow position: chr17:8496637-8496878 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 61, 37

Conread position: 83-334
Cow position: chr17:15720753-15720495 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 39, 50

Conread position: 83-334
Cow position: chr17:20085474-20085722 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 187
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 38, 10

Conread position: 83-334
Cow position: chr17:33283040-33283286 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 33, 58

Conread position: 83-334
Cow position: chr17:41011882-41011631 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 39, 81

Conread position: 83-337
Cow position: chr17:11380891-11381147 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 39, 57

Conread position: 83-344
Cow position: chr17:1570091-1570347 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 38, 53

Conread position: 83-344
Cow position: chr17:2553962-2554223 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr17:3742459-3742198 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 194
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr17:5307440-5307701 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr17:6262159-6261900 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 39, 56

Conread position: 83-344
Cow position: chr17:8210950-8210692 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 39, 55

Conread position: 83-344
Cow position: chr17:11085383-11085641 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 38, 58

Conread position: 83-344
Cow position: chr17:14242123-14241854 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 187
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr17:15327582-15327328 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr17:15709694-15709955 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr17:17257818-17257556 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr17:19979829-19980087 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr17:22107347-22107608 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 38, 82

Conread position: 83-344
Cow position: chr17:27792484-27792730 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 182
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 241, 39

Conread position: 83-344
Cow position: chr17:29825666-29825927 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr17:34575057-34574795 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr17:38828214-38827950 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 199
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 38, 22

Conread position: 83-345
Cow position: chr17:452131-451871 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 38, 55

Conread position: 83-345
Cow position: chr17:1785704-1785961 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 182
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 40, 63

Conread position: 83-345
Cow position: chr17:16855799-16856064 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 38, 58

Conread position: 83-345
Cow position: chr17:19216411-19216668 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 38, 56

Conread position: 83-358
Cow position: chr17:2245748-2246022 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 39, 6

Conread position: 84-330
Cow position: chr17:13690105-13690352 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 38, 83

Conread position: 84-344
Cow position: chr17:2176278-2176018 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 38, 54

Conread position: 84-344
Cow position: chr17:23322130-23322389 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 62, 53

Conread position: 85-331
Cow position: chr17:1458687-1458442 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 36, 84

Conread position: 85-334
Cow position: chr17:7561657-7561910 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 52

Conread position: 86-345
Cow position: chr17:4296958-4296701 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 183
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 23, 127

Conread position: 89-251
Cow position: chr17:25463282-25463120 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 32, 49

Conread position: 89-329
Cow position: chr17:24311134-24310897 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 33

Conread position: 89-330
Cow position: chr17:15141047-15141282 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 235, 29

Conread position: 89-331
Cow position: chr17:9752082-9751851 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 235, 32

Conread position: 89-340
Cow position: chr17:604775-605016 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 32, 12

Conread position: 89-344
Cow position: chr17:21768822-21769073 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 32, 43

Conread position: 90-330
Cow position: chr17:2032523-2032288 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 32, 66

Conread position: 90-343
Cow position: chr17:11785181-11784932 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 185
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 56, 28

Conread position: 93-344
Cow position: chr17:22562192-22561945 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 191
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 54, 28

Conread position: 93-344
Cow position: chr17:36815979-36815743 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 28, 68

Conread position: 95-325
Cow position: chr17:4162163-4162391 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 69, 0

Conread position: 95-334
Cow position: chr17:14294260-14294494 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 216, 27

Conread position: 96-278
Cow position: chr17:21714273-21714100 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 96-326
Cow position: chr17:15649198-15648968 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 25, 64

Conread position: 101-344
Cow position: chr17:6080792-6080550 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 171
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 159, 21

Conread position: 101-344
Cow position: chr17:20079603-20079841 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 20, 37

Conread position: 102-334
Cow position: chr17:28026212-28026445 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 19, 36

Conread position: 105-334
Cow position: chr17:52582-52813 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 16, 60

Conread position: 105-334
Cow position: chr17:2005380-2005161 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 16, 60

Conread position: 105-344
Cow position: chr17:14935662-14935900 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 16, 33

Conread position: 116-330
Cow position: chr17:13707042-13706828 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 22

Conread position: 116-344
Cow position: chr17:4210285-4210052 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 6, 17

Conread position: 120-334
Cow position: chr17:23721533-23721324 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 198, 5

Conread position: 125-334
Cow position: chr17:24784428-24784219 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 21, 12

Conread position: 133-344
Cow position: chr17:29303023-29302812 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 17, 32

Conread position: 134-336
Cow position: chr17:35990371-35990566 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 189, 30

Conread position: 141-334
Cow position: chr17:19367897-19367704 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 85, 23

Conread position: 163-345
Cow position: chr17:3236183-3236001 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 160, 174

Conread position: 164-344
Cow position: chr17:36284253-36284073 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 160, 173

Conread position: 164-345
Cow position: chr17:146237-146418 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 154, 9

Conread position: 168-318
Cow position: chr17:11188266-11188115 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 173-331
Cow position: chr17:16120382-16120540 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 176-344
Cow position: chr17:39050647-39050479 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 148, 161

Conread position: 200-344
Cow position: chr17:14030906-14031050 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 124, 137

Show alignments to all cow chromosomes.