Cow genome map

Conread name: Ss1.1-rfcc11b_a8.5

Conread position: 3-302
Cow position: chr18:23446040-23446326 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 198
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 51, 8

Conread position: 25-302
Cow position: chr18:16360420-16360683 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 186
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 91, 62

Conread position: 25-327
Cow position: chr18:16275152-16275454 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 210
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 24, 53

Conread position: 25-340
Cow position: chr18:43128966-43128656 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 223
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 70, 28

Conread position: 25-344
Cow position: chr18:21182668-21182982 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 219
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 24, 51

Conread position: 25-344
Cow position: chr18:51344671-51344365 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 230
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 23, 54

Conread position: 25-364
Cow position: chr18:29120596-29120274 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 224
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 326, 29

Conread position: 26-345
Cow position: chr18:54272994-54272679 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 98, 23

Conread position: 82-345
Cow position: chr18:40080163-40080419 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 41, 85

Conread position: 83-235
Cow position: chr18:33987975-33987823 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 55

Conread position: 83-241
Cow position: chr18:33101841-33101683 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 55

Conread position: 83-278
Cow position: chr18:36310173-36309981 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 39, 53

Conread position: 83-288
Cow position: chr18:21530040-21529838 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 38, 55

Conread position: 83-288
Cow position: chr18:51662664-51662460 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 38, 55

Conread position: 83-295
Cow position: chr18:27538931-27538722 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 38, 55

Conread position: 83-298
Cow position: chr18:3755459-3755244 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 38, 55

Conread position: 83-302
Cow position: chr18:23441316-23441534 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 38, 81

Conread position: 83-314
Cow position: chr18:36647689-36647457 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 38, 82

Conread position: 83-315
Cow position: chr18:1956654-1956886 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 38, 55

Conread position: 83-319
Cow position: chr18:34983007-34982772 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 38, 78

Conread position: 83-325
Cow position: chr18:35295690-35295445 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 55

Conread position: 83-325
Cow position: chr18:37677044-37676815 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 56

Conread position: 83-330
Cow position: chr18:4979285-4979529 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 240, 36

Conread position: 83-330
Cow position: chr18:52630733-52630977 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 63, 38

Conread position: 83-334
Cow position: chr18:9661231-9660982 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 188
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 39, 69

Conread position: 83-334
Cow position: chr18:23702568-23702818 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 38, 58

Conread position: 83-334
Cow position: chr18:25922907-25922655 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 38, 55

Conread position: 83-334
Cow position: chr18:29864091-29864342 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 188
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 38, 25

Conread position: 83-334
Cow position: chr18:36511135-36510886 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 38, 55

Conread position: 83-334
Cow position: chr18:40158841-40158593 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:603942-604199 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:4948460-4948200 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:11272333-11272589 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:16081040-16080779 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 194
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:16092333-16092073 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 187
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:16174092-16174363 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 38, 60

Conread position: 83-344
Cow position: chr18:16464346-16464601 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 38, 23

Conread position: 83-344
Cow position: chr18:19354878-19354623 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:19457384-19457122 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 38, 224

Conread position: 83-344
Cow position: chr18:22183014-22183267 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 188
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 241, 38

Conread position: 83-344
Cow position: chr18:25353763-25353505 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 189
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:25941418-25941157 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:27168146-27167883 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 17, 57

Conread position: 83-344
Cow position: chr18:28767317-28767056 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:28969772-28970030 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 38, 58

Conread position: 83-344
Cow position: chr18:30762443-30762704 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:32165414-32165665 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 63, 35

Conread position: 83-344
Cow position: chr18:32437587-32437848 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:32656205-32655945 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:37156223-37156490 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 38, 18

Conread position: 83-344
Cow position: chr18:37508483-37508222 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:40483521-40483263 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 38, 58

Conread position: 83-344
Cow position: chr18:54168367-54168626 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 197
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr18:55417239-55416984 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 189
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 38, 55

Conread position: 83-345
Cow position: chr18:36775791-36775525 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 55

Conread position: 83-355
Cow position: chr18:18476282-18476555 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 182
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 70

Conread position: 84-249
Cow position: chr18:51696808-51696642 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 37, 54

Conread position: 84-297
Cow position: chr18:17322920-17322708 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 37, 58

Conread position: 84-320
Cow position: chr18:14792364-14792597 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 158
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 37, 81

Conread position: 84-325
Cow position: chr18:46874879-46875119 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 164
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 37, 80

Conread position: 84-330
Cow position: chr18:1046871-1046621 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 37, 84

Conread position: 84-334
Cow position: chr18:17998938-17999188 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 37, 81

Conread position: 84-334
Cow position: chr18:51460327-51460575 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 37, 54

Conread position: 84-344
Cow position: chr18:14132908-14132644 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 37, 5

Conread position: 84-344
Cow position: chr18:37700975-37701232 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 37, 54

Conread position: 84-344
Cow position: chr18:47744009-47743750 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 37, 54

Conread position: 84-358
Cow position: chr18:28929077-28929350 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 206
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 234, 38

Conread position: 85-334
Cow position: chr18:39813116-39813363 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 169
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 51

Conread position: 85-334
Cow position: chr18:54026313-54026073 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 61, 30

Conread position: 86-334
Cow position: chr18:22481023-22480773 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 30, 50

Conread position: 86-334
Cow position: chr18:45185366-45185118 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 48

Conread position: 87-330
Cow position: chr18:15857689-15857448 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 236, 35

Conread position: 87-340
Cow position: chr18:16391632-16391876 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 177
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 78

Conread position: 89-302
Cow position: chr18:14128778-14128981 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 32, 52

Conread position: 89-319
Cow position: chr18:19403989-19404217 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 153
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 34, 76

Conread position: 89-327
Cow position: chr18:35854018-35854253 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 76

Conread position: 89-330
Cow position: chr18:9356369-9356608 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 235, 33

Conread position: 89-334
Cow position: chr18:14418485-14418236 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 32, 82

Conread position: 89-344
Cow position: chr18:26244069-26244321 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 32, 52

Conread position: 89-344
Cow position: chr18:27835576-27835830 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 57, 48

Conread position: 89-344
Cow position: chr18:52655323-52655071 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 33, 52

Conread position: 93-229
Cow position: chr18:56035895-56035759 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 45

Conread position: 94-304
Cow position: chr18:23801528-23801319 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 27, 12

Conread position: 94-345
Cow position: chr18:35291058-35290813 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 26, 7

Conread position: 98-344
Cow position: chr18:16146514-16146753 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 23, 44

Conread position: 100-330
Cow position: chr18:56484175-56484403 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 21, 40

Conread position: 101-334
Cow position: chr18:37664897-37664664 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 20, 63

Conread position: 104-345
Cow position: chr18:53633688-53633450 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 17, 22

Conread position: 105-331
Cow position: chr18:17095314-17095076 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 120-319
Cow position: chr18:46866428-46866627 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 64, 46

Conread position: 120-334
Cow position: chr18:40343794-40344009 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 161, 47

Conread position: 120-344
Cow position: chr18:29070928-29070705 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 30, 17

Conread position: 122-328
Cow position: chr18:38023882-38024083 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 144, 42

Conread position: 122-334
Cow position: chr18:24713492-24713703 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 111, 42

Conread position: 123-340
Cow position: chr18:37491300-37491082 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 130, 41

Conread position: 127-333
Cow position: chr18:45399640-45399439 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 107, 0

Conread position: 133-334
Cow position: chr18:16136202-16136401 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 141-334
Cow position: chr18:24618604-24618411 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 183, 23

Conread position: 164-325
Cow position: chr18:20233538-20233697 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 112, 0

Conread position: 164-331
Cow position: chr18:15487267-15487434 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 161, 109

Conread position: 164-344
Cow position: chr18:9723043-9722863 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 160, 173

Show alignments to all cow chromosomes.