Cow genome map
| Conread name: | Ss1.1-rfcc11b_a8.5 |
| Conread position: | 24-344 |
| Cow position: | chr19:47098706-47098383 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 25-282 |
| Cow position: | chr19:17020119-17019873 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 52 |
| Conread position: | 25-334 |
| Cow position: | chr19:3088749-3089052 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 25-334 |
| Cow position: | chr19:7344606-7344302 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 27-344 |
| Cow position: | chr19:775187-774882 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 27-344 |
| Cow position: | chr19:20107307-20106986 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 27-344 |
| Cow position: | chr19:22511210-22511513 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 40-345 |
| Cow position: | chr19:41787152-41787452 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 199, 34 |
| Conread position: | 40-381 |
| Cow position: | chr19:191135-190799 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 42-344 |
| Cow position: | chr19:16129911-16129633 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 79, 33 |
| Conread position: | 44-329 |
| Cow position: | chr19:31379425-31379703 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 62-319 |
| Cow position: | chr19:6500026-6499775 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 67-265 |
| Cow position: | chr19:3113914-3113717 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 83-261 |
| Cow position: | chr19:37683459-37683284 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 83-315 |
| Cow position: | chr19:1584988-1584756 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 27, 56 |
| Conread position: | 83-316 |
| Cow position: | chr19:28579179-28579402 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 38 |
| Conread position: | 83-327 |
| Cow position: | chr19:673795-674033 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-332 |
| Cow position: | chr19:28404047-28404297 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-334 |
| Cow position: | chr19:207025-206774 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 83-334 |
| Cow position: | chr19:2271597-2271846 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 40, 58 |
| Conread position: | 83-334 |
| Cow position: | chr19:16318088-16318340 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-334 |
| Cow position: | chr19:17882484-17882243 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 20, 86 |
| Conread position: | 83-334 |
| Cow position: | chr19:35382633-35382878 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 241, 81 |
| Conread position: | 83-334 |
| Cow position: | chr19:39666030-39666278 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-334 |
| Cow position: | chr19:40834743-40834992 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 83-335 |
| Cow position: | chr19:44032983-44032739 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 205, 68 |
| Conread position: | 83-339 |
| Cow position: | chr19:9705665-9705918 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 83-340 |
| Cow position: | chr19:375171-375434 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 38, 127 |
| Conread position: | 83-344 |
| Cow position: | chr19:4388108-4387854 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 240, 35 |
| Conread position: | 83-344 |
| Cow position: | chr19:5898987-5899245 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr19:7481416-7481673 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr19:7490619-7490361 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr19:15445344-15445600 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr19:20610853-20610592 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr19:21338322-21338583 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr19:39183018-39183279 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 83-344 |
| Cow position: | chr19:39393032-39392772 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 83-344 |
| Cow position: | chr19:42581774-42582024 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 240, 35 |
| Conread position: | 83-344 |
| Cow position: | chr19:43147195-43146934 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 83-345 |
| Cow position: | chr19:5717120-5717374 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 41 |
| Conread position: | 83-345 |
| Cow position: | chr19:12775644-12775382 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 38, 57 |
| Conread position: | 83-345 |
| Cow position: | chr19:33944090-33943831 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 84-330 |
| Cow position: | chr19:33649666-33649914 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 37, 81 |
| Conread position: | 84-344 |
| Cow position: | chr19:38559763-38560024 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 37, 254 |
| Conread position: | 85-312 |
| Cow position: | chr19:32498227-32498452 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 85-313 |
| Cow position: | chr19:1586735-1586953 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 86-320 |
| Cow position: | chr19:4302779-4302547 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 66 |
| Conread position: | 86-329 |
| Cow position: | chr19:257831-257589 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 35, 78 |
| Conread position: | 86-334 |
| Cow position: | chr19:748744-748984 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 89-297 |
| Cow position: | chr19:28795813-28796011 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 33 |
| Conread position: | 89-334 |
| Cow position: | chr19:30560687-30560448 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 89-344 |
| Cow position: | chr19:40849972-40850225 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 32, 76 |
| Conread position: | 90-306 |
| Cow position: | chr19:42297611-42297827 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 33, 72 |
| Conread position: | 93-331 |
| Cow position: | chr19:32138408-32138645 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 93-333 |
| Cow position: | chr19:27035149-27035386 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 28, 68 |
| Conread position: | 94-334 |
| Cow position: | chr19:23399755-23400005 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 94-344 |
| Cow position: | chr19:5732020-5731773 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 95-334 |
| Cow position: | chr19:29086172-29085930 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 21, 71 |
| Conread position: | 95-334 |
| Cow position: | chr19:44758283-44758518 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 70 |
| Conread position: | 96-293 |
| Cow position: | chr19:24727168-24727365 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 96-345 |
| Cow position: | chr19:42305158-42305393 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 26 |
| Conread position: | 97-343 |
| Cow position: | chr19:3142139-3141896 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 105-344 |
| Cow position: | chr19:343743-343511 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 106-330 |
| Cow position: | chr19:790111-789890 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 141, 17 |
| Conread position: | 109-334 |
| Cow position: | chr19:36418465-36418241 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 120-331 |
| Cow position: | chr19:40828-40620 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 121-315 |
| Cow position: | chr19:34031847-34031654 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 121-344 |
| Cow position: | chr19:40885265-40885485 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 176, 16 |
| Conread position: | 123-321 |
| Cow position: | chr19:24673011-24673209 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 137-345 |
| Cow position: | chr19:28789541-28789748 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 141-334 |
| Cow position: | chr19:39690244-39690053 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 144-328 |
| Cow position: | chr19:30757697-30757523 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 164-334 |
| Cow position: | chr19:36149087-36148916 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 164-334 |
| Cow position: | chr19:39749701-39749534 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 167-340 |
| Cow position: | chr19:1488680-1488854 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 161, 0 |
Show alignments to all cow chromosomes.