Cow genome map
| Conread name: | Ss1.1-rfcc11b_a8.5 |
| Conread position: | 24-331 |
| Cow position: | chr20:20752310-20752601 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 97, 44 |
| Conread position: | 24-344 |
| Cow position: | chr20:30578427-30578113 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 25-344 |
| Cow position: | chr20:24541960-24541650 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 54 |
| Conread position: | 25-344 |
| Cow position: | chr20:35131434-35131116 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 24, 143 |
| Conread position: | 29-311 |
| Cow position: | chr20:10493726-10493448 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 92, 41 |
| Conread position: | 47-334 |
| Cow position: | chr20:3499432-3499719 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 58-328 |
| Cow position: | chr20:13788619-13788349 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 70-344 |
| Cow position: | chr20:23805380-23805655 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 7, 69 |
| Conread position: | 76-345 |
| Cow position: | chr20:21917136-21916870 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 83-233 |
| Cow position: | chr20:18355713-18355563 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-236 |
| Cow position: | chr20:6476013-6475866 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 83-246 |
| Cow position: | chr20:34459821-34459984 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-251 |
| Cow position: | chr20:752630-752462 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-312 |
| Cow position: | chr20:20388820-20389049 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 55 |
| Conread position: | 83-314 |
| Cow position: | chr20:15095420-15095645 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-316 |
| Cow position: | chr20:28444865-28445094 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 83-328 |
| Cow position: | chr20:14748421-14748186 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 240, 37 |
| Conread position: | 83-330 |
| Cow position: | chr20:13654800-13655041 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 80 |
| Conread position: | 83-330 |
| Cow position: | chr20:35127138-35126902 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 83-331 |
| Cow position: | chr20:13500783-13500543 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 83-331 |
| Cow position: | chr20:19424529-19424291 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 233, 10 |
| Conread position: | 83-332 |
| Cow position: | chr20:28163527-28163283 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-334 |
| Cow position: | chr20:13662539-13662789 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 83-334 |
| Cow position: | chr20:19342297-19342045 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-334 |
| Cow position: | chr20:19440398-19440149 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 39, 58 |
| Conread position: | 83-334 |
| Cow position: | chr20:21719048-21718796 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-341 |
| Cow position: | chr20:20185239-20184992 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 83-343 |
| Cow position: | chr20:35019404-35019156 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 83-344 |
| Cow position: | chr20:12046998-12046737 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 83-344 |
| Cow position: | chr20:12435914-12436172 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr20:13765380-13765119 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr20:14721898-14722158 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 83-344 |
| Cow position: | chr20:16177281-16177533 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr20:18093702-18093963 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr20:22696548-22696799 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 240, 38 |
| Conread position: | 83-344 |
| Cow position: | chr20:23467181-23467442 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 83-344 |
| Cow position: | chr20:28561430-28561690 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 83-344 |
| Cow position: | chr20:29757795-29758056 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr20:30430754-30430496 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr20:30688056-30687796 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 83-344 |
| Cow position: | chr20:33598916-33598666 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-345 |
| Cow position: | chr20:20440467-20440729 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 84-315 |
| Cow position: | chr20:39881823-39881588 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 81 |
| Conread position: | 84-325 |
| Cow position: | chr20:23899868-23899640 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 38 |
| Conread position: | 84-329 |
| Cow position: | chr20:27345476-27345711 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 84-331 |
| Cow position: | chr20:10867304-10867551 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 84-334 |
| Cow position: | chr20:5537411-5537163 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 84-344 |
| Cow position: | chr20:7598370-7598630 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 37, 81 |
| Conread position: | 84-344 |
| Cow position: | chr20:10922437-10922697 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 85-334 |
| Cow position: | chr20:35144399-35144642 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 85-345 |
| Cow position: | chr20:28481082-28480817 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 66, 36 |
| Conread position: | 86-334 |
| Cow position: | chr20:21397008-21396763 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 86-344 |
| Cow position: | chr20:15602282-15602539 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 89-258 |
| Cow position: | chr20:8971407-8971571 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 89-309 |
| Cow position: | chr20:5076483-5076272 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 89-334 |
| Cow position: | chr20:27875959-27875715 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 89-334 |
| Cow position: | chr20:28280289-28280047 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 32, 5 |
| Conread position: | 89-344 |
| Cow position: | chr20:17659269-17659521 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 89-345 |
| Cow position: | chr20:8365259-8365500 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 235, 33 |
| Conread position: | 92-344 |
| Cow position: | chr20:6905878-6906129 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 232, 72 |
| Conread position: | 93-334 |
| Cow position: | chr20:7513813-7513584 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 93-334 |
| Cow position: | chr20:28756429-28756199 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 75 |
| Conread position: | 93-345 |
| Cow position: | chr20:7569623-7569866 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 28, 59 |
| Conread position: | 101-344 |
| Cow position: | chr20:8754080-8753837 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 104-330 |
| Cow position: | chr20:8214809-8215031 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 105-334 |
| Cow position: | chr20:30385764-30385994 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 107-344 |
| Cow position: | chr20:825240-825004 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 115-329 |
| Cow position: | chr20:10037329-10037544 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 181, 22 |
| Conread position: | 120-344 |
| Cow position: | chr20:13794457-13794239 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 202, 40 |
| Conread position: | 121-331 |
| Cow position: | chr20:5793037-5792840 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 202, 42 |
| Conread position: | 123-330 |
| Cow position: | chr20:14867926-14868130 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 200, 14 |
| Conread position: | 158-334 |
| Cow position: | chr20:18322572-18322747 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 166, 159 |
| Conread position: | 162-334 |
| Cow position: | chr20:15294381-15294210 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 162, 14 |
| Conread position: | 163-344 |
| Cow position: | chr20:19366736-19366917 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 164, 174 |
| Conread position: | 164-340 |
| Cow position: | chr20:18969108-18968936 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 158, 51 |
| Conread position: | 165-334 |
| Cow position: | chr20:10852972-10853138 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 125 |
Show alignments to all cow chromosomes.