Cow genome map

Conread name: Ss1.1-rfcc11b_a8.5

Conread position: 22-251
Cow position:
Alignm length: 235
Alignm identity: 166
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 100, 27

Conread position: 24-330
Cow position:
Alignm length: 309
Alignm identity: 211
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 98, 35

Conread position: 24-344
Cow position:
Alignm length: 327
Alignm identity: 230
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 24, 57

Conread position: 25-315
Cow position:
Alignm length: 292
Alignm identity: 200
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 96, 24

Conread position: 25-325
Cow position:
Alignm length: 306
Alignm identity: 212
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 24, 54

Conread position: 25-334
Cow position:
Alignm length: 311
Alignm identity: 223
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 97, 38

Conread position: 25-334
Cow position:
Alignm length: 315
Alignm identity: 222
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 48, 20

Conread position: 25-344
Cow position:
Alignm length: 328
Alignm identity: 229
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 24, 54

Conread position: 25-344
Cow position:
Alignm length: 326
Alignm identity: 238
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 13, 53

Conread position: 25-344
Cow position:
Alignm length: 326
Alignm identity: 232
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 12, 54

Conread position: 25-344
Cow position:
Alignm length: 326
Alignm identity: 228
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 24, 54

Conread position: 26-314
Cow position:
Alignm length: 292
Alignm identity: 191
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 95, 16

Conread position: 27-337
Cow position:
Alignm length: 313
Alignm identity: 203
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 89, 36

Conread position: 27-344
Cow position:
Alignm length: 324
Alignm identity: 224
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 21, 54

Conread position: 27-344
Cow position:
Alignm length: 324
Alignm identity: 229
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 10, 53

Conread position: 27-409
Cow position:
Alignm length: 392
Alignm identity: 239
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 22, 52

Conread position: 30-221
Cow position:
Alignm length: 192
Alignm identity: 138
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 46-294
Cow position:
Alignm length: 257
Alignm identity: 179
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 30, 126

Conread position: 71-344
Cow position:
Alignm length: 278
Alignm identity: 199
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 6, 68

Conread position: 82-334
Cow position:
Alignm length: 254
Alignm identity: 178
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 241, 33

Conread position: 83-229
Cow position:
Alignm length: 149
Alignm identity: 110
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 38, 55

Conread position: 83-251
Cow position:
Alignm length: 171
Alignm identity: 123
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 38, 55

Conread position: 83-273
Cow position:
Alignm length: 193
Alignm identity: 139
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 55

Conread position: 83-280
Cow position:
Alignm length: 198
Alignm identity: 142
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 83-280
Cow position:
Alignm length: 200
Alignm identity: 148
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 38, 55

Conread position: 83-295
Cow position:
Alignm length: 214
Alignm identity: 155
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 55

Conread position: 83-305
Cow position:
Alignm length: 233
Alignm identity: 164
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 38, 57

Conread position: 83-313
Cow position:
Alignm length: 232
Alignm identity: 156
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 33, 82

Conread position: 83-321
Cow position:
Alignm length: 241
Alignm identity: 157
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 38, 55

Conread position: 83-321
Cow position:
Alignm length: 240
Alignm identity: 167
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 39, 82

Conread position: 83-329
Cow position:
Alignm length: 249
Alignm identity: 172
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 39, 55

Conread position: 83-329
Cow position:
Alignm length: 250
Alignm identity: 179
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 38, 55

Conread position: 83-330
Cow position:
Alignm length: 250
Alignm identity: 173
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 42, 82

Conread position: 83-330
Cow position:
Alignm length: 250
Alignm identity: 176
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 38, 55

Conread position: 83-330
Cow position:
Alignm length: 250
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 38, 45

Conread position: 83-330
Cow position:
Alignm length: 257
Alignm identity: 177
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 37, 83

Conread position: 83-331
Cow position:
Alignm length: 252
Alignm identity: 182
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 38, 55

Conread position: 83-331
Cow position:
Alignm length: 258
Alignm identity: 187
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 38, 55

Conread position: 83-334
Cow position:
Alignm length: 254
Alignm identity: 182
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 38, 55

Conread position: 83-334
Cow position:
Alignm length: 254
Alignm identity: 181
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 37, 55

Conread position: 83-334
Cow position:
Alignm length: 254
Alignm identity: 180
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 39, 55

Conread position: 83-334
Cow position:
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 240, 35

Conread position: 83-334
Cow position:
Alignm length: 271
Alignm identity: 187
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 83-334
Cow position:
Alignm length: 264
Alignm identity: 184
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 55

Conread position: 83-334
Cow position:
Alignm length: 255
Alignm identity: 180
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 38, 55

Conread position: 83-334
Cow position:
Alignm length: 255
Alignm identity: 178
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 38, 55

Conread position: 83-334
Cow position:
Alignm length: 254
Alignm identity: 169
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 6

Conread position: 83-334
Cow position:
Alignm length: 255
Alignm identity: 182
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 38, 55

Conread position: 83-334
Cow position:
Alignm length: 258
Alignm identity: 186
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 38, 82

Conread position: 83-334
Cow position:
Alignm length: 254
Alignm identity: 181
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 38, 82

Conread position: 83-334
Cow position:
Alignm length: 256
Alignm identity: 178
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 38, 82

Conread position: 83-337
Cow position:
Alignm length: 257
Alignm identity: 176
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 39, 49

Conread position: 83-342
Cow position:
Alignm length: 262
Alignm identity: 185
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 38, 58

Conread position: 83-343
Cow position:
Alignm length: 263
Alignm identity: 191
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 38, 91

Conread position: 83-344
Cow position:
Alignm length: 265
Alignm identity: 185
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 266
Alignm identity: 194
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 264
Alignm identity: 191
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 264
Alignm identity: 185
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 64, 54

Conread position: 83-344
Cow position:
Alignm length: 265
Alignm identity: 183
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 265
Alignm identity: 194
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 264
Alignm identity: 193
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 265
Alignm identity: 196
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 265
Alignm identity: 192
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 264
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 58

Conread position: 83-344
Cow position:
Alignm length: 266
Alignm identity: 191
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 265
Alignm identity: 190
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 274
Alignm identity: 190
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 40, 77

Conread position: 83-344
Cow position:
Alignm length: 264
Alignm identity: 186
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 39, 130

Conread position: 83-344
Cow position:
Alignm length: 265
Alignm identity: 192
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 265
Alignm identity: 195
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 265
Alignm identity: 191
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 266
Alignm identity: 190
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 265
Alignm identity: 187
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 20, 79

Conread position: 83-344
Cow position:
Alignm length: 264
Alignm identity: 182
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 264
Alignm identity: 190
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 265
Alignm identity: 188
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 264
Alignm identity: 191
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 271
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 87

Conread position: 83-344
Cow position:
Alignm length: 264
Alignm identity: 183
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 50

Conread position: 83-344
Cow position:
Alignm length: 265
Alignm identity: 192
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position:
Alignm length: 265
Alignm identity: 188
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 38, 8

Conread position: 83-345
Cow position:
Alignm length: 267
Alignm identity: 194
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 38, 55

Conread position: 83-345
Cow position:
Alignm length: 265
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 54

Conread position: 83-538
Cow position:
Alignm length: 457
Alignm identity: 149
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 38, 55

Conread position: 84-300
Cow position:
Alignm length: 218
Alignm identity: 154
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 38, 81

Conread position: 84-334
Cow position:
Alignm length: 255
Alignm identity: 172
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 43, 37

Conread position: 84-344
Cow position:
Alignm length: 263
Alignm identity: 183
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 37, 54

Conread position: 84-354
Cow position:
Alignm length: 274
Alignm identity: 193
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 32, 54

Conread position: 86-288
Cow position:
Alignm length: 206
Alignm identity: 148
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 35, 52

Conread position: 86-325
Cow position:
Alignm length: 246
Alignm identity: 177
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 35, 53

Conread position: 86-334
Cow position:
Alignm length: 253
Alignm identity: 174
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 37, 78

Conread position: 88-334
Cow position:
Alignm length: 249
Alignm identity: 173
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 34, 11

Conread position: 89-279
Cow position:
Alignm length: 192
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 32, 49

Conread position: 89-309
Cow position:
Alignm length: 223
Alignm identity: 162
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 32, 49

Conread position: 89-325
Cow position:
Alignm length: 242
Alignm identity: 169
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 74, 133

Conread position: 89-326
Cow position:
Alignm length: 239
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 33, 49

Conread position: 89-334
Cow position:
Alignm length: 249
Alignm identity: 178
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 33, 49

Conread position: 89-334
Cow position:
Alignm length: 248
Alignm identity: 176
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 32, 76

Conread position: 89-343
Cow position:
Alignm length: 259
Alignm identity: 190
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 32, 49

Conread position: 89-343
Cow position:
Alignm length: 257
Alignm identity: 180
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 58, 33

Conread position: 89-344
Cow position:
Alignm length: 258
Alignm identity: 175
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 32, 24

Conread position: 89-344
Cow position:
Alignm length: 258
Alignm identity: 185
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 32, 49

Conread position: 89-345
Cow position:
Alignm length: 260
Alignm identity: 150
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 117, 84

Conread position: 93-364
Cow position:
Alignm length: 283
Alignm identity: 197
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 28, 43

Conread position: 94-344
Cow position:
Alignm length: 253
Alignm identity: 174
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 27, 12

Conread position: 94-344
Cow position:
Alignm length: 255
Alignm identity: 182
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 27, 44

Conread position: 96-325
Cow position:
Alignm length: 231
Alignm identity: 170
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 25, 45

Conread position: 97-330
Cow position:
Alignm length: 238
Alignm identity: 176
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 24, 41

Conread position: 97-331
Cow position:
Alignm length: 237
Alignm identity: 168
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 25, 41

Conread position: 101-329
Cow position:
Alignm length: 233
Alignm identity: 167
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 12, 65

Conread position: 101-344
Cow position:
Alignm length: 246
Alignm identity: 173
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 20, 37

Conread position: 101-344
Cow position:
Alignm length: 251
Alignm identity: 189
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 9, 242

Conread position: 101-344
Cow position:
Alignm length: 245
Alignm identity: 181
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 222, 63

Conread position: 102-325
Cow position:
Alignm length: 225
Alignm identity: 148
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 22, 63

Conread position: 105-330
Cow position:
Alignm length: 228
Alignm identity: 168
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 16, 28

Conread position: 105-331
Cow position:
Alignm length: 231
Alignm identity: 166
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 19, 33

Conread position: 105-344
Cow position:
Alignm length: 243
Alignm identity: 180
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 16, 33

Conread position: 108-344
Cow position:
Alignm length: 240
Alignm identity: 174
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 13, 57

Conread position: 112-340
Cow position:
Alignm length: 233
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 223

Conread position: 113-344
Cow position:
Alignm length: 233
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 210, 224

Conread position: 116-334
Cow position:
Alignm length: 219
Alignm identity: 160
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 48, 0

Conread position: 123-345
Cow position:
Alignm length: 225
Alignm identity: 159
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 23, 124

Conread position: 136-342
Cow position:
Alignm length: 209
Alignm identity: 150
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 10, 28

Conread position: 164-334
Cow position:
Alignm length: 172
Alignm identity: 134
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 159, 0

Conread position: 164-342
Cow position:
Alignm length: 180
Alignm identity: 133
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 157, 173

Conread position: 166-310
Cow position:
Alignm length: 145
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 166-313
Cow position:
Alignm length: 149
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 112, 21

Conread position: 166-344
Cow position:
Alignm length: 179
Alignm identity: 132
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 168-329
Cow position:
Alignm length: 163
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 155, 0

Conread position: 168-340
Cow position:
Alignm length: 174
Alignm identity: 130
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 114, 167

Conread position: 173-344
Cow position:
Alignm length: 173
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 151, 164

Conread position: 180-334
Cow position:
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 143, 0

Conread position: 182-330
Cow position:
Alignm length: 150
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 141, 0

Conread position: 195-344
Cow position:
Alignm length: 151
Alignm identity: 110
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 127, 142

Show alignments to all cow chromosomes.