Cow genome map
| Conread name: | Ss1.1-rfcc11b_a8.5 |
| Conread position: | 25-344 |
| Cow position: | chr23:3708869-3708562 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 71-344 |
| Cow position: | chr23:36028955-36029226 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 82-344 |
| Cow position: | chr23:37652330-37652070 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 39, 83 |
| Conread position: | 83-233 |
| Cow position: | chr23:8705280-8705128 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-235 |
| Cow position: | chr23:14264763-14264613 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-258 |
| Cow position: | chr23:21773497-21773673 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-265 |
| Cow position: | chr23:36097235-36097053 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-284 |
| Cow position: | chr23:528491-528290 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-288 |
| Cow position: | chr23:22169303-22169096 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 83-314 |
| Cow position: | chr23:2321527-2321758 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-319 |
| Cow position: | chr23:4266426-4266662 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-326 |
| Cow position: | chr23:7043502-7043743 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 39, 6 |
| Conread position: | 83-330 |
| Cow position: | chr23:29442682-29442921 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 83-331 |
| Cow position: | chr23:19491973-19491724 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-334 |
| Cow position: | chr23:2411221-2411458 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 240, 53 |
| Conread position: | 83-334 |
| Cow position: | chr23:4308761-4309013 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 38, 83 |
| Conread position: | 83-334 |
| Cow position: | chr23:4891108-4890857 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 39, 8 |
| Conread position: | 83-334 |
| Cow position: | chr23:11781209-11780961 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 83-334 |
| Cow position: | chr23:28221122-28220871 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 83-334 |
| Cow position: | chr23:31165244-31164992 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-334 |
| Cow position: | chr23:37200102-37200351 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-334 |
| Cow position: | chr23:38583362-38583123 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 238, 37 |
| Conread position: | 83-340 |
| Cow position: | chr23:19441451-19441703 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 83-343 |
| Cow position: | chr23:5872148-5872407 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 180, 27 |
| Conread position: | 83-343 |
| Cow position: | chr23:34256585-34256839 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr23:1011416-1011677 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 83-344 |
| Cow position: | chr23:1050109-1050371 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr23:1339358-1339630 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr23:2792349-2792604 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr23:4515956-4515695 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr23:7313677-7313938 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr23:11713443-11713704 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr23:15179483-15179225 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 83-344 |
| Cow position: | chr23:15528002-15527744 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 83-344 |
| Cow position: | chr23:15568508-15568769 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 55 |
| Conread position: | 83-344 |
| Cow position: | chr23:17845301-17845040 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr23:25350772-25350511 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr23:28305348-28305090 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr23:29448804-29449054 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 240, 37 |
| Conread position: | 83-344 |
| Cow position: | chr23:32350345-32350603 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr23:41142757-41142500 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 83-345 |
| Cow position: | chr23:30635433-30635682 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 84-319 |
| Cow position: | chr23:1021508-1021747 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 84-344 |
| Cow position: | chr23:5625154-5625411 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 85-280 |
| Cow position: | chr23:1114471-1114661 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 85-327 |
| Cow position: | chr23:2438895-2439135 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 36, 80 |
| Conread position: | 89-330 |
| Cow position: | chr23:17877501-17877744 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 6, 77 |
| Conread position: | 89-331 |
| Cow position: | chr23:4436067-4435827 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 89-344 |
| Cow position: | chr23:943387-943132 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 89-344 |
| Cow position: | chr23:14960541-14960793 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 89-345 |
| Cow position: | chr23:1958572-1958320 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 89-345 |
| Cow position: | chr23:7357641-7357393 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 90-347 |
| Cow position: | chr23:15216647-15216897 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 31, 51 |
| Conread position: | 92-330 |
| Cow position: | chr23:4638202-4638441 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 92-345 |
| Cow position: | chr23:2318771-2319019 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 93-343 |
| Cow position: | chr23:14264275-14264030 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 68 |
| Conread position: | 94-331 |
| Cow position: | chr23:30238670-30238440 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 94-380 |
| Cow position: | chr23:16612389-16612670 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 96-334 |
| Cow position: | chr23:2024682-2024910 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 101-240 |
| Cow position: | chr23:1204941-1204800 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 102-330 |
| Cow position: | chr23:6222032-6221813 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 105-334 |
| Cow position: | chr23:38580056-38579839 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 120-334 |
| Cow position: | chr23:3878702-3878915 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 120-334 |
| Cow position: | chr23:8099663-8099458 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 140, 21 |
| Conread position: | 122-345 |
| Cow position: | chr23:3452366-3452585 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 195, 15 |
| Conread position: | 125-344 |
| Cow position: | chr23:21792096-21792314 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 125-405 |
| Cow position: | chr23:1399850-1400119 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 255, 39 |
| Conread position: | 130-334 |
| Cow position: | chr23:609087-608883 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 163-334 |
| Cow position: | chr23:28915314-28915142 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 164-334 |
| Cow position: | chr23:16496912-16497083 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 164-344 |
| Cow position: | chr23:16056098-16055921 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 159, 117 |
| Conread position: | 164-345 |
| Cow position: | chr23:17248864-17248684 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 75 |
| Conread position: | 165-334 |
| Cow position: | chr23:2578327-2578155 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 183-344 |
| Cow position: | chr23:4101942-4102103 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 141, 154 |
| Conread position: | 210-344 |
| Cow position: | chr23:10874303-10874437 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 114, 127 |
Show alignments to all cow chromosomes.