Cow genome map


           Conread name:
           Ss1.1-rfcc11b_a8.5
        

               Conread position:
               18-346
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               219
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               128, 36
               

               Conread position:
               24-334
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               24, 56
               

               Conread position:
               25-334
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               96, 42
               

               Conread position:
               25-334
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               24, 51
               

               Conread position:
               25-344
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               38, 21
               

               Conread position:
               26-334
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               23, 53
               

               Conread position:
               27-334
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               219
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               94, 14
               

               Conread position:
               41-305
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               58, 13
               

               Conread position:
               41-331
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               22, 57
               

               Conread position:
               47-311
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               75, 28
               

               Conread position:
               55-334
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               53, 12
               

               Conread position:
               71-345
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               6, 68
               

               Conread position:
               74-334
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               249, 13
               

               Conread position:
               82-322
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               39, 56
               

               Conread position:
               82-344
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               241, 39
               

               Conread position:
               83-258
               

               Cow position:
               
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-265
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-308
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               38, 45
               

               Conread position:
               83-318
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               21, 5
               

               Conread position:
               83-325
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               38, 59
               

               Conread position:
               83-330
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               183
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               39, 55
               

               Conread position:
               83-330
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               39, 55
               

               Conread position:
               83-331
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               238, 81
               

               Conread position:
               83-331
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-334
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-334
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               185
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-334
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-334
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               39, 55
               

               Conread position:
               83-334
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               39, 79
               

               Conread position:
               83-334
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               186
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-334
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               40, 23
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               195
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               192
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               38, 82
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               192
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               38, 53
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               38, 58
               

               Conread position:
               83-344
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               192
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-345
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-345
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               83-345
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               199
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               38, 262
               

               Conread position:
               83-347
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               39, 55
               

               Conread position:
               83-423
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               240
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               84-325
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               179, 41
               

               Conread position:
               84-344
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               37, 54
               

               Conread position:
               85-327
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               37, 49
               

               Conread position:
               85-330
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               37, 80
               

               Conread position:
               85-396
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               213
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               36, 47
               

               Conread position:
               88-283
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               188, 74
               

               Conread position:
               89-312
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               32, 63
               

               Conread position:
               89-327
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               27, 53
               

               Conread position:
               89-334
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               89-344
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               32, 49
               

               Conread position:
               92-334
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               20, 60
               

               Conread position:
               93-300
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               28, 55
               

               Conread position:
               93-318
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               93-329
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               29, 61
               

               Conread position:
               93-334
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               182
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               28, 45
               

               Conread position:
               94-334
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               28, 34
               

               Conread position:
               94-377
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               27, 44
               

               Conread position:
               95-331
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 70
               

               Conread position:
               96-334
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               25, 42
               

               Conread position:
               96-344
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               25, 42
               

               Conread position:
               96-344
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               25, 69
               

               Conread position:
               101-322
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               20, 37
               

               Conread position:
               101-330
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               21, 37
               

               Conread position:
               105-334
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               16, 33
               

               Conread position:
               105-344
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               17, 34
               

               Conread position:
               108-293
               

               Cow position:
               
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               13, 34
               

               Conread position:
               109-345
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               13, 43
               

               Conread position:
               122-334
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               124, 37
               

               Conread position:
               125-344
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               197, 12
               

               Conread position:
               127-328
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               140
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               195, 37
               

               Conread position:
               137-344
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               9, 163
               

               Conread position:
               148-345
               

               Cow position:
               
               

               Alignm length:
               200
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               9, 98
               

               Conread position:
               162-334
               

               Cow position:
               
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               164-344
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               160, 173
               

               Conread position:
               164-344
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               159, 0
               

               Conread position:
               164-345
               

               Cow position:
               
               

               Alignm length:
               183
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               159, 42
               

               Conread position:
               173-334
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               117
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               150, 0
               

               Conread position:
               174-320
               

               Cow position:
               
               

               Alignm length:
               148
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               132, 118
               

               Conread position:
               194-334
               

               Cow position:
               
               

               Alignm length:
               142
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               130, 0
               
Show alignments to all cow chromosomes.