Cow genome map
| Conread name: | Ss1.1-rfcc11b_a8.5 |
| Conread position: | 25-288 |
| Cow position: | chr26:8884363-8884106 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 25-334 |
| Cow position: | chr26:367143-366839 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 24, 54 |
| Conread position: | 25-334 |
| Cow position: | chr26:3028112-3028420 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 54 |
| Conread position: | 25-334 |
| Cow position: | chr26:18035424-18035126 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 25-344 |
| Cow position: | chr26:2417885-2418198 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 12, 55 |
| Conread position: | 26-316 |
| Cow position: | chr26:9483595-9483312 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 41-345 |
| Cow position: | chr26:15551668-15551953 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 272, 24 |
| Conread position: | 83-254 |
| Cow position: | chr26:31792967-31792799 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 81 |
| Conread position: | 83-297 |
| Cow position: | chr26:28707601-28707814 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 83-310 |
| Cow position: | chr26:898863-898636 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 83-315 |
| Cow position: | chr26:6845055-6845284 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 83-316 |
| Cow position: | chr26:17430044-17430277 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 83-319 |
| Cow position: | chr26:1349168-1349404 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-330 |
| Cow position: | chr26:615793-616041 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 83-331 |
| Cow position: | chr26:8654853-8655093 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 83-334 |
| Cow position: | chr26:2349712-2349963 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-334 |
| Cow position: | chr26:6425457-6425205 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-334 |
| Cow position: | chr26:9114372-9114121 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 83-334 |
| Cow position: | chr26:17326624-17326376 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 83-334 |
| Cow position: | chr26:23888871-23888622 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-334 |
| Cow position: | chr26:32846316-32846562 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 83-334 |
| Cow position: | chr26:33877936-33877690 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 6 |
| Conread position: | 83-341 |
| Cow position: | chr26:35122784-35123042 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 83-343 |
| Cow position: | chr26:21824190-21824449 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 83-344 |
| Cow position: | chr26:3703496-3703241 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 83-344 |
| Cow position: | chr26:5677617-5677359 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr26:6497147-6497403 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr26:6792668-6792413 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 37 |
| Conread position: | 83-344 |
| Cow position: | chr26:9841945-9842191 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 238, 36 |
| Conread position: | 83-344 |
| Cow position: | chr26:12586072-12586323 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr26:14896429-14896168 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr26:17394427-17394684 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 83-344 |
| Cow position: | chr26:18856580-18856323 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 83-344 |
| Cow position: | chr26:19349032-19349293 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-344 |
| Cow position: | chr26:30753929-30754190 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 83-344 |
| Cow position: | chr26:35561666-35561406 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 83-345 |
| Cow position: | chr26:4749972-4750228 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 83-345 |
| Cow position: | chr26:12667926-12667654 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 83-345 |
| Cow position: | chr26:19012398-19012140 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 84-279 |
| Cow position: | chr26:10505266-10505073 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 89-288 |
| Cow position: | chr26:4548107-4547913 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 89-317 |
| Cow position: | chr26:14365774-14365995 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 89-344 |
| Cow position: | chr26:8872298-8872042 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 92-302 |
| Cow position: | chr26:28317507-28317713 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 93-344 |
| Cow position: | chr26:4602703-4602951 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 230, 22 |
| Conread position: | 101-341 |
| Cow position: | chr26:35335755-35335993 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 222, 21 |
| Conread position: | 101-344 |
| Cow position: | chr26:3225623-3225866 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 101-345 |
| Cow position: | chr26:8281240-8281469 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 118-344 |
| Cow position: | chr26:13772479-13772708 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 122-330 |
| Cow position: | chr26:10459477-10459275 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 137-334 |
| Cow position: | chr26:15145642-15145444 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 142-344 |
| Cow position: | chr26:21008570-21008369 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 181, 25 |
Show alignments to all cow chromosomes.