Cow genome map

Conread name: Ss1.1-rfcc11b_a8.5

Conread position: 25-330
Cow position: chr27:28294394-28294690 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 24, 46

Conread position: 25-344
Cow position: chr27:21284723-21285038 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 73, 50

Conread position: 25-352
Cow position: chr27:3995424-3995745 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 54

Conread position: 55-346
Cow position: chr27:25965523-25965826 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 29, 84

Conread position: 70-344
Cow position: chr27:8200235-8199964 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 200
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 7, 17

Conread position: 76-344
Cow position: chr27:4981800-4981536 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 45, 62

Conread position: 82-307
Cow position: chr27:30571241-30571017 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 43, 56

Conread position: 83-254
Cow position: chr27:26599355-26599186 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 38, 82

Conread position: 83-258
Cow position: chr27:24296828-24297003 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 38, 82

Conread position: 83-265
Cow position: chr27:22798033-22798215 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 55

Conread position: 83-302
Cow position: chr27:9332161-9331941 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 38, 55

Conread position: 83-330
Cow position: chr27:15034679-15034929 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 39, 83

Conread position: 83-330
Cow position: chr27:16031978-16032222 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 63, 35

Conread position: 83-331
Cow position: chr27:23318502-23318742 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 171
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 5, 81

Conread position: 83-334
Cow position: chr27:13900310-13900067 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 54

Conread position: 83-334
Cow position: chr27:25085969-25085721 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 173

Conread position: 83-334
Cow position: chr27:25801761-25802011 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 38, 19

Conread position: 83-334
Cow position: chr27:27193932-27194176 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 239, 27

Conread position: 83-339
Cow position: chr27:5985278-5985021 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 38, 55

Conread position: 83-343
Cow position: chr27:15273660-15273916 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 78

Conread position: 83-344
Cow position: chr27:3233108-3233366 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 38, 58

Conread position: 83-344
Cow position: chr27:3991429-3991161 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 192
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 38, 89

Conread position: 83-344
Cow position: chr27:9990798-9991051 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 182
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 240, 38

Conread position: 83-344
Cow position: chr27:15634918-15635176 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 38, 58

Conread position: 83-344
Cow position: chr27:19524299-19524557 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 187
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr27:22742969-22743227 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr27:27288914-27288661 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 184
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 55

Conread position: 83-344
Cow position: chr27:30034581-30034321 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 82

Conread position: 83-400
Cow position: chr27:797194-797507 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 183
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 55

Conread position: 84-330
Cow position: chr27:27730057-27730297 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 37, 54

Conread position: 84-331
Cow position: chr27:14270612-14270858 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 27, 81

Conread position: 84-347
Cow position: chr27:22012945-22013203 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 37, 54

Conread position: 85-334
Cow position: chr27:26327473-26327227 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 174
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 36, 56

Conread position: 89-330
Cow position: chr27:5913346-5913104 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 32, 76

Conread position: 89-334
Cow position: chr27:8591476-8591229 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 168
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 14, 77

Conread position: 89-334
Cow position: chr27:28923395-28923151 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 32, 45

Conread position: 92-344
Cow position: chr27:5995067-5995316 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 175, 49

Conread position: 93-341
Cow position: chr27:11433535-11433289 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 28, 74

Conread position: 93-344
Cow position: chr27:166511-166753 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 28, 49

Conread position: 96-334
Cow position: chr27:17567527-17567297 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 227, 5

Conread position: 96-334
Cow position: chr27:20980969-20980738 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 25, 48

Conread position: 96-344
Cow position: chr27:12263021-12263270 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 25, 42

Conread position: 101-302
Cow position: chr27:1535589-1535388 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 20, 64

Conread position: 104-325
Cow position: chr27:28686141-28686361 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 17, 58

Conread position: 105-321
Cow position: chr27:25884509-25884728 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 16, 65

Conread position: 105-339
Cow position: chr27:23293953-23293723 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 16, 33

Conread position: 108-335
Cow position: chr27:25786417-25786634 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 14, 57

Conread position: 108-344
Cow position: chr27:66415-66651 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 13, 30

Conread position: 109-331
Cow position: chr27:24573701-24573924 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 16, 29

Conread position: 121-306
Cow position: chr27:1502438-1502617 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 128
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 121-345
Cow position: chr27:6016813-6016593 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 203, 41

Conread position: 125-334
Cow position: chr27:26553063-26553272 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 21, 10

Conread position: 126-315
Cow position: chr27:30447920-30448108 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 134
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 151

Conread position: 133-344
Cow position: chr27:1211734-1211524 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 14, 32

Conread position: 145-297
Cow position: chr27:22830663-22830510 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 164-344
Cow position: chr27:1676227-1676407 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 160, 173

Conread position: 164-344
Cow position: chr27:4802853-4803033 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 160, 173

Conread position: 164-344
Cow position: chr27:21453764-21453584 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 160, 173

Conread position: 178-298
Cow position: chr27:14231770-14231890 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 188-345
Cow position: chr27:10324805-10324962 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 135, 154

Conread position: 195-330
Cow position: chr27:25059445-25059309 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 128, 0

Conread position: 210-345
Cow position: chr27:27278047-27277911 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 71, 128

Show alignments to all cow chromosomes.