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Cow genome map

           
Conread name:
           
Ss1.1-rfce22c_a4.5
        

               
Conread position:
               
2-438
               

               
Cow position:
               
chr1:72012081-72011618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr1:84170231-84170494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
5-326
               

               
Cow position:
               
chr1:76019951-76019633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
5-370
               

               
Cow position:
               
chr1:1956601-1956222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 9
               

               
Conread position:
               
5-370
               

               
Cow position:
               
chr1:12464924-12464551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
106, 44
               

               
Conread position:
               
5-374
               

               
Cow position:
               
chr1:90621765-90621388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
136, 39
               

               
Conread position:
               
5-425
               

               
Cow position:
               
chr1:37309779-37309359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 135
               

               
Conread position:
               
6-366
               

               
Cow position:
               
chr1:26702470-26702098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 27
               

               
Conread position:
               
6-524
               

               
Cow position:
               
chr1:68845753-68845209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
15-369
               

               
Cow position:
               
chr1:82884648-82884283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
16-326
               

               
Cow position:
               
chr1:57297232-57297545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
21-173
               

               
Cow position:
               
chr1:6240356-6240519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
22-305
               

               
Cow position:
               
chr1:1801886-1802180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
20, 187
               

               
Conread position:
               
22-318
               

               
Cow position:
               
chr1:100770993-100770697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
20, 16
               

               
Conread position:
               
22-320
               

               
Cow position:
               
chr1:52488216-52487923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 182
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr1:81228589-81228273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 112
               

               
Conread position:
               
22-366
               

               
Cow position:
               
chr1:39510300-39509949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
20, 139
               

               
Conread position:
               
22-366
               

               
Cow position:
               
chr1:77880973-77880625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
20, 66
               

               
Conread position:
               
22-378
               

               
Cow position:
               
chr1:71295566-71295171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
20, 143
               

               
Conread position:
               
22-446
               

               
Cow position:
               
chr1:91039417-91038993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
20, 34
               

               
Conread position:
               
22-506
               

               
Cow position:
               
chr1:63435061-63434554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 141
               

               
Conread position:
               
24-332
               

               
Cow position:
               
chr1:45535446-45535774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 147
               

               
Conread position:
               
26-243
               

               
Cow position:
               
chr1:53613435-53613216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
16, 195
               

               
Conread position:
               
39-374
               

               
Cow position:
               
chr1:62036573-62036919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
62, 25
               

               
Conread position:
               
44-247
               

               
Cow position:
               
chr1:27495272-27495469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
44-326
               

               
Cow position:
               
chr1:102266491-102266205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 65
               

               
Conread position:
               
47-302
               

               
Cow position:
               
chr1:61350927-61351183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
52, 143
               

               
Conread position:
               
48-287
               

               
Cow position:
               
chr1:31341274-31341030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 190
               

               
Conread position:
               
48-371
               

               
Cow position:
               
chr1:78810815-78811152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
6, 108
               

               
Conread position:
               
48-536
               

               
Cow position:
               
chr1:52435050-52435549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
12, 157
               

               
Conread position:
               
49-221
               

               
Cow position:
               
chr1:86484737-86484923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
59, 163
               

               
Conread position:
               
49-231
               

               
Cow position:
               
chr1:49753714-49753896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
49-320
               

               
Cow position:
               
chr1:26179033-26178754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
59, 147
               

               
Conread position:
               
49-340
               

               
Cow position:
               
chr1:94403998-94404290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
140, 97
               

               
Conread position:
               
49-490
               

               
Cow position:
               
chr1:36997974-36998410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 154
               

               
Conread position:
               
50-175
               

               
Cow position:
               
chr1:62996277-62996405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 103
               

               
Conread position:
               
50-187
               

               
Cow position:
               
chr1:24571107-24570964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
50-188
               

               
Cow position:
               
chr1:24201956-24201823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
50-192
               

               
Cow position:
               
chr1:13614936-13614785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
50-192
               

               
Cow position:
               
chr1:33717004-33717156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
50-197
               

               
Cow position:
               
chr1:95071768-95071917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 103
               

               
Conread position:
               
50-209
               

               
Cow position:
               
chr1:84786553-84786721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 125
               

               
Conread position:
               
50-221
               

               
Cow position:
               
chr1:19545317-19545141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
57, 104
               

               
Conread position:
               
50-221
               

               
Cow position:
               
chr1:24528816-24528650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
144, 71
               

               
Conread position:
               
50-221
               

               
Cow position:
               
chr1:57305615-57305789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 133
               

               
Conread position:
               
50-223
               

               
Cow position:
               
chr1:44136679-44136505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 81
               

               
Conread position:
               
50-229
               

               
Cow position:
               
chr1:30504253-30504437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
58, 88
               

               
Conread position:
               
50-229
               

               
Cow position:
               
chr1:89395375-89395567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
49, 161
               

               
Conread position:
               
50-230
               

               
Cow position:
               
chr1:95327370-95327184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
50-231
               

               
Cow position:
               
chr1:98708225-98708408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
61, 101
               

               
Conread position:
               
50-237
               

               
Cow position:
               
chr1:52506762-52506581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
135, 57
               

               
Conread position:
               
50-238
               

               
Cow position:
               
chr1:32631249-32631436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
58, 145
               

               
Conread position:
               
50-238
               

               
Cow position:
               
chr1:79590883-79591082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
50-238
               

               
Cow position:
               
chr1:81180197-81179997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
50-238
               

               
Cow position:
               
chr1:85361638-85361835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
54, 157
               

               
Conread position:
               
50-238
               

               
Cow position:
               
chr1:92370578-92370385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
50-239
               

               
Cow position:
               
chr1:94212016-94212206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
58, 148
               

               
Conread position:
               
50-242
               

               
Cow position:
               
chr1:20799655-20799863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 139
               

               
Conread position:
               
50-244
               

               
Cow position:
               
chr1:82861557-82861762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 161
               

               
Conread position:
               
50-246
               

               
Cow position:
               
chr1:81363775-81363971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
141, 29
               

               
Conread position:
               
50-249
               

               
Cow position:
               
chr1:14379747-14379550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 34
               

               
Conread position:
               
50-250
               

               
Cow position:
               
chr1:51628719-51628512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 137
               

               
Conread position:
               
50-254
               

               
Cow position:
               
chr1:20287897-20288113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
61, 107
               

               
Conread position:
               
50-254
               

               
Cow position:
               
chr1:69941182-69940978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
70, 196
               

               
Conread position:
               
50-255
               

               
Cow position:
               
chr1:57698671-57698455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 137
               

               
Conread position:
               
50-257
               

               
Cow position:
               
chr1:84116184-84116388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
147, 156
               

               
Conread position:
               
50-257
               

               
Cow position:
               
chr1:98577260-98577485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
63, 101
               

               
Conread position:
               
50-266
               

               
Cow position:
               
chr1:4293845-4294058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
91, 64
               

               
Conread position:
               
50-267
               

               
Cow position:
               
chr1:87216245-87216462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
57, 40
               

               
Conread position:
               
50-269
               

               
Cow position:
               
chr1:22467713-22467942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
54, 175
               

               
Conread position:
               
50-270
               

               
Cow position:
               
chr1:56657821-56658039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
57, 124
               

               
Conread position:
               
50-270
               

               
Cow position:
               
chr1:102826031-102825811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 148
               

               
Conread position:
               
50-273
               

               
Cow position:
               
chr1:45673494-45673725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
50-274
               

               
Cow position:
               
chr1:19998253-19998032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
50, 99
               

               
Conread position:
               
50-276
               

               
Cow position:
               
chr1:75967219-75967443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
148, 56
               

               
Conread position:
               
50-278
               

               
Cow position:
               
chr1:11873574-11873347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
61, 101
               

               
Conread position:
               
50-279
               

               
Cow position:
               
chr1:55194681-55194453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 78
               

               
Conread position:
               
50-279
               

               
Cow position:
               
chr1:57900958-57900726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
48, 105
               

               
Conread position:
               
50-281
               

               
Cow position:
               
chr1:53540173-53540408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 111
               

               
Conread position:
               
50-282
               

               
Cow position:
               
chr1:3340720-3340956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
48, 107
               

               
Conread position:
               
50-283
               

               
Cow position:
               
chr1:5409831-5409596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 79
               

               
Conread position:
               
50-283
               

               
Cow position:
               
chr1:44836447-44836204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 163
               

               
Conread position:
               
50-283
               

               
Cow position:
               
chr1:64962872-64962648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
96, 30
               

               
Conread position:
               
50-284
               

               
Cow position:
               
chr1:24655742-24655978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
59, 169
               

               
Conread position:
               
50-284
               

               
Cow position:
               
chr1:29671741-29671501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 146
               

               
Conread position:
               
50-284
               

               
Cow position:
               
chr1:29901174-29900945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
183, 40
               

               
Conread position:
               
50-284
               

               
Cow position:
               
chr1:63905691-63905454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
47, 40
               

               
Conread position:
               
50-286
               

               
Cow position:
               
chr1:666143-666388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
71, 157
               

               
Conread position:
               
50-286
               

               
Cow position:
               
chr1:78783329-78783570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
58, 152
               

               
Conread position:
               
50-287
               

               
Cow position:
               
chr1:3776831-3776596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 78
               

               
Conread position:
               
50-287
               

               
Cow position:
               
chr1:33811717-33811953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 53
               

               
Conread position:
               
50-287
               

               
Cow position:
               
chr1:50679503-50679256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
50-287
               

               
Cow position:
               
chr1:78794953-78794713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
61, 127
               

               
Conread position:
               
50-289
               

               
Cow position:
               
chr1:79663884-79663648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 119
               

               
Conread position:
               
50-289
               

               
Cow position:
               
chr1:98558001-98557760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
58, 144
               

               
Conread position:
               
50-291
               

               
Cow position:
               
chr1:95050317-95050059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
50-294
               

               
Cow position:
               
chr1:3752159-3751908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
62, 154
               

               
Conread position:
               
50-294
               

               
Cow position:
               
chr1:22745407-22745655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
8, 182
               

               
Conread position:
               
50-295
               

               
Cow position:
               
chr1:22448804-22448550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
56, 106
               

               
Conread position:
               
50-295
               

               
Cow position:
               
chr1:30034329-30034564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
50-295
               

               
Cow position:
               
chr1:71952870-71953107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
50-295
               

               
Cow position:
               
chr1:88970842-88971086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 155
               

               
Conread position:
               
50-295
               

               
Cow position:
               
chr1:100512378-100512640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 156
               

               
Conread position:
               
50-297
               

               
Cow position:
               
chr1:99095145-99095395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
50-298
               

               
Cow position:
               
chr1:22255165-22255405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
188, 24
               

               
Conread position:
               
50-298
               

               
Cow position:
               
chr1:71818679-71818429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
50, 105
               

               
Conread position:
               
50-299
               

               
Cow position:
               
chr1:29627132-29626876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 83
               

               
Conread position:
               
50-302
               

               
Cow position:
               
chr1:43380246-43379985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 133
               

               
Conread position:
               
50-302
               

               
Cow position:
               
chr1:43839310-43839568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
54, 130
               

               
Conread position:
               
50-302
               

               
Cow position:
               
chr1:82504749-82505014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
58, 160
               

               
Conread position:
               
50-302
               

               
Cow position:
               
chr1:86113630-86113361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
56, 44
               

               
Conread position:
               
50-304
               

               
Cow position:
               
chr1:4573303-4573559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 104
               

               
Conread position:
               
50-305
               

               
Cow position:
               
chr1:3035210-3034957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 103
               

               
Conread position:
               
50-305
               

               
Cow position:
               
chr1:80988129-80988393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 128
               

               
Conread position:
               
50-306
               

               
Cow position:
               
chr1:55163705-55163962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
61, 109
               

               
Conread position:
               
50-308
               

               
Cow position:
               
chr1:43448040-43447784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 78
               

               
Conread position:
               
50-310
               

               
Cow position:
               
chr1:24235738-24235472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 104
               

               
Conread position:
               
50-310
               

               
Cow position:
               
chr1:48444400-48444147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
141, 49
               

               
Conread position:
               
50-311
               

               
Cow position:
               
chr1:44155045-44155298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
131, 49
               

               
Conread position:
               
50-311
               

               
Cow position:
               
chr1:68217576-68217313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
54, 99
               

               
Conread position:
               
50-311
               

               
Cow position:
               
chr1:101551240-101551511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 149
               

               
Conread position:
               
50-312
               

               
Cow position:
               
chr1:31235149-31234886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
61, 152
               

               
Conread position:
               
50-312
               

               
Cow position:
               
chr1:43358232-43357962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
58, 155
               

               
Conread position:
               
50-318
               

               
Cow position:
               
chr1:1877810-1878075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
61, 154
               

               
Conread position:
               
50-319
               

               
Cow position:
               
chr1:24597435-24597711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 86
               

               
Conread position:
               
50-320
               

               
Cow position:
               
chr1:1916452-1916170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 100
               

               
Conread position:
               
50-320
               

               
Cow position:
               
chr1:4374556-4374280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
47, 92
               

               
Conread position:
               
50-320
               

               
Cow position:
               
chr1:51968252-51968519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
15, 50
               

               
Conread position:
               
50-323
               

               
Cow position:
               
chr1:634974-635254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
54, 133
               

               
Conread position:
               
50-323
               

               
Cow position:
               
chr1:31348658-31348377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 153
               

               
Conread position:
               
50-323
               

               
Cow position:
               
chr1:31765614-31765313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
58, 162
               

               
Conread position:
               
50-323
               

               
Cow position:
               
chr1:55260648-55260375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
65, 151
               

               
Conread position:
               
50-323
               

               
Cow position:
               
chr1:57396144-57395876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
74, 61
               

               
Conread position:
               
50-323
               

               
Cow position:
               
chr1:60907144-60907437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
41, 165
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chr1:44769329-44769048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
50-325
               

               
Cow position:
               
chr1:31348127-31347872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
209, 74
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:1053371-1053644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
54, 84
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:1165384-1165662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
58, 136
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:1185522-1185792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 151
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:1991642-1991355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:7186570-7186851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
58, 160
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:10942309-10942031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
73, 138
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:11914095-11913815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
58, 145
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:18937051-18936774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
61, 157
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:20002453-20002169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
141, 75
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:21460650-21460935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
54, 77
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:26201003-26201295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
58, 112
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:26896042-26895748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
68, 122
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:34856846-34856565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
104, 53
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:38278263-38277965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
58, 222
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:40531326-40531040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
104, 14
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:42968535-42968256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
54, 132
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:46693873-46693591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:48580914-48581192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
75, 152
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:52753383-52753097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
54, 150
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:53595108-53595382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
101, 127
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:61735656-61735372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
54, 154
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:63390991-63390704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:64804325-64804039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
58, 162
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:79278659-79278384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
46, 35
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:80336464-80336186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
54, 150
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:88618376-88618659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
54, 84
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:90864517-90864230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 159
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:91816991-91816708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
54, 131
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:92437208-92436927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 134
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:95035573-95035289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 129
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:96478478-96478763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
62, 154
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr1:96964103-96964379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
64, 103
               

               
Conread position:
               
50-327
               

               
Cow position:
               
chr1:54199600-54199315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 14
               

               
Conread position:
               
50-329
               

               
Cow position:
               
chr1:61724242-61723953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
90, 65
               

               
Conread position:
               
50-335
               

               
Cow position:
               
chr1:71691597-71691893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
58, 156
               

               
Conread position:
               
50-342
               

               
Cow position:
               
chr1:79165308-79164998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 158
               

               
Conread position:
               
50-345
               

               
Cow position:
               
chr1:68951414-68951713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 99
               

               
Conread position:
               
50-347
               

               
Cow position:
               
chr1:57264204-57263916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
144, 71
               

               
Conread position:
               
50-349
               

               
Cow position:
               
chr1:5023956-5023670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
195, 58
               

               
Conread position:
               
50-350
               

               
Cow position:
               
chr1:54258350-54258659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 147
               

               
Conread position:
               
50-350
               

               
Cow position:
               
chr1:55146584-55146891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 96
               

               
Conread position:
               
50-350
               

               
Cow position:
               
chr1:90640807-90641121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 159
               

               
Conread position:
               
50-357
               

               
Cow position:
               
chr1:53424970-53425277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 59
               

               
Conread position:
               
50-358
               

               
Cow position:
               
chr1:26943094-26943409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 102
               

               
Conread position:
               
50-359
               

               
Cow position:
               
chr1:51531556-51531853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
110, 44
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr1:1981327-1981008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
147, 96
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr1:3962901-3962582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
141, 48
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr1:6941248-6941573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 103
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr1:6958661-6958986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 103
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr1:7350321-7350653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr1:36931942-36932259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 104
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr1:39069168-39068851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 99
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr1:44125857-44125533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
141, 80
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr1:49433482-49433159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 82
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr1:71253772-71253451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 105
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr1:82338001-82337675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr1:91066366-91066047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 99
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr1:99609148-99609473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
58, 79
               

               
Conread position:
               
50-363
               

               
Cow position:
               
chr1:45289091-45288765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 105
               

               
Conread position:
               
50-365
               

               
Cow position:
               
chr1:10964077-10964398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
73, 138
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:4027644-4027972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
51, 163
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:4032417-4032741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 49
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:4290941-4291273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 154
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:13413809-13414133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
58, 100
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:21835731-21836040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 100
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:24534460-24534148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
145, 62
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:36874798-36875135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
58, 26
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:48731045-48730723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 16
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:49839290-49839593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
54, 103
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:61884698-61885022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
58, 117
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:68253374-68253704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
57, 103
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:69264604-69264917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 54
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:72141347-72141681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
101, 242
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:76470442-76470752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 56
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:79844251-79844574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
61, 101
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:80422085-80422381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
144, 58
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:81613168-81613498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 107
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:84240682-84240989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 80
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:88652413-88652745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 103
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:89349760-89350074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 57
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:95215403-95215081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:95499713-95499387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
58, 106
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:100421626-100421929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
144, 45
               

               
Conread position:
               
50-369
               

               
Cow position:
               
chr1:84812154-84811827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
50-369
               

               
Cow position:
               
chr1:98551496-98551831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
50-369
               

               
Cow position:
               
chr1:100324943-100324639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
144, 49
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:8405-8728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
70, 148
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:41056467-41056791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:49795787-49796105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
54, 77
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:50931186-50930866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 44
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:51445662-51445998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 153
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:52039419-52039749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 103
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:56225258-56225582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
145, 61
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:61742184-61741855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
59, 53
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:68619153-68618820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 16
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:68818015-68817686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:69539481-69539804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:69695226-69694880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 169
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:74822234-74822564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:81913369-81913042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:84255537-84255880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:93043808-93044130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 107
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr1:98594353-98594678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
58, 149
               

               
Conread position:
               
50-371
               

               
Cow position:
               
chr1:22728830-22729170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
50-373
               

               
Cow position:
               
chr1:41696837-41697171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
50-374
               

               
Cow position:
               
chr1:3137716-3138030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
50-374
               

               
Cow position:
               
chr1:6077677-6078008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
54, 96
               

               
Conread position:
               
50-374
               

               
Cow position:
               
chr1:13637888-13637546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
60, 101
               

               
Conread position:
               
50-374
               

               
Cow position:
               
chr1:22826952-22827275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
61, 101
               

               
Conread position:
               
50-374
               

               
Cow position:
               
chr1:43389265-43388935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 88
               

               
Conread position:
               
50-374
               

               
Cow position:
               
chr1:52956042-52956368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 58
               

               
Conread position:
               
50-374
               

               
Cow position:
               
chr1:57575985-57575647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
56, 115
               

               
Conread position:
               
50-374
               

               
Cow position:
               
chr1:101713900-101714234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 107
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr1:45555143-45555486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 109
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr1:83583155-83582812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 106
               

               
Conread position:
               
50-380
               

               
Cow position:
               
chr1:11226463-11226125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
58, 148
               

               
Conread position:
               
50-382
               

               
Cow position:
               
chr1:91800823-91800472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
50-390
               

               
Cow position:
               
chr1:81868944-81868596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 116
               

               
Conread position:
               
50-392
               

               
Cow position:
               
chr1:93499405-93499756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
50-392
               

               
Cow position:
               
chr1:102647486-102647148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 179
               

               
Conread position:
               
50-394
               

               
Cow position:
               
chr1:45007249-45007604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
63, 146
               

               
Conread position:
               
50-394
               

               
Cow position:
               
chr1:48105651-48105298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
50-394
               

               
Cow position:
               
chr1:53374218-53374565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 86
               

               
Conread position:
               
50-394
               

               
Cow position:
               
chr1:69678543-69678187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
50-394
               

               
Cow position:
               
chr1:81569252-81568890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
61, 151
               

               
Conread position:
               
50-395
               

               
Cow position:
               
chr1:34300765-34300412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
61, 88
               

               
Conread position:
               
50-395
               

               
Cow position:
               
chr1:43352868-43352519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
50-399
               

               
Cow position:
               
chr1:11728960-11729316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
50-399
               

               
Cow position:
               
chr1:55705471-55705100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
50-400
               

               
Cow position:
               
chr1:75744643-75745008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 100
               

               
Conread position:
               
50-405
               

               
Cow position:
               
chr1:31414176-31413825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
50-409
               

               
Cow position:
               
chr1:47658136-47658496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
62, 77
               

               
Conread position:
               
50-424
               

               
Cow position:
               
chr1:23634118-23633737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
72, 56
               

               
Conread position:
               
50-432
               

               
Cow position:
               
chr1:94378816-94379182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
62, 43
               

               
Conread position:
               
50-434
               

               
Cow position:
               
chr1:18283280-18283662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
218, 68
               

               
Conread position:
               
50-435
               

               
Cow position:
               
chr1:14981336-14980937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
50-435
               

               
Cow position:
               
chr1:28176782-28177181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
58, 197
               

               
Conread position:
               
50-435
               

               
Cow position:
               
chr1:39418336-39417930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 150
               

               
Conread position:
               
50-435
               

               
Cow position:
               
chr1:39427199-39426816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
211, 64
               

               
Conread position:
               
50-435
               

               
Cow position:
               
chr1:46940079-46939676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 135
               

               
Conread position:
               
50-435
               

               
Cow position:
               
chr1:52052921-52052532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
142, 64
               

               
Conread position:
               
50-435
               

               
Cow position:
               
chr1:68827123-68826723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 101
               

               
Conread position:
               
50-435
               

               
Cow position:
               
chr1:82880448-82880832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
142, 12
               

               
Conread position:
               
50-436
               

               
Cow position:
               
chr1:21787109-21787526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
50-436
               

               
Cow position:
               
chr1:71748224-71747832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
62, 128
               

               
Conread position:
               
50-436
               

               
Cow position:
               
chr1:97611870-97611471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 126
               

               
Conread position:
               
50-436
               

               
Cow position:
               
chr1:101634483-101634901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:19482290-19481896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 101
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:22628855-22628452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 44
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:25281893-25281473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 105
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:26729510-26729879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 79
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:34159614-34160032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 77
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:37322222-37321806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
44, 106
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:42555052-42555447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 74
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:42874164-42873773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
55, 103
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:43505306-43505728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
51, 104
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:46218366-46218754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 90
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:54478107-54478520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 103
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:64302451-64302046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 64
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:70434776-70435190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:72286267-72285900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
141, 85
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:77462147-77462543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:82936799-82936401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
245, 97
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:89510150-89509727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
54, 130
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:95176718-95177122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 109
               

               
Conread position:
               
50-438
               

               
Cow position:
               
chr1:100551753-100552170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 151
               

               
Conread position:
               
50-440
               

               
Cow position:
               
chr1:85774242-85774624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
57, 108
               

               
Conread position:
               
50-446
               

               
Cow position:
               
chr1:7971213-7971616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 56
               

               
Conread position:
               
50-446
               

               
Cow position:
               
chr1:41181627-41182048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
55, 115
               

               
Conread position:
               
50-458
               

               
Cow position:
               
chr1:70380363-70379941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
50-459
               

               
Cow position:
               
chr1:92963181-92963604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 116
               

               
Conread position:
               
50-459
               

               
Cow position:
               
chr1:93810224-93810614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 64
               

               
Conread position:
               
50-464
               

               
Cow position:
               
chr1:19145137-19144710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
7, 79
               

               
Conread position:
               
50-470
               

               
Cow position:
               
chr1:51981010-51981423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
57, 132
               

               
Conread position:
               
50-470
               

               
Cow position:
               
chr1:53622747-53623175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
50-473
               

               
Cow position:
               
chr1:15547251-15547680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 195
               

               
Conread position:
               
50-474
               

               
Cow position:
               
chr1:42138649-42139080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
50-475
               

               
Cow position:
               
chr1:73761569-73761154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 84
               

               
Conread position:
               
50-476
               

               
Cow position:
               
chr1:3924011-3923578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
50-478
               

               
Cow position:
               
chr1:73960484-73960919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 107
               

               
Conread position:
               
50-480
               

               
Cow position:
               
chr1:33719896-33720351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
54, 158
               

               
Conread position:
               
50-482
               

               
Cow position:
               
chr1:6305086-6304627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 106
               

               
Conread position:
               
50-482
               

               
Cow position:
               
chr1:53369849-53370318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
53, 166
               

               
Conread position:
               
50-483
               

               
Cow position:
               
chr1:31934296-31934737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
46, 151
               

               
Conread position:
               
50-485
               

               
Cow position:
               
chr1:72035146-72034694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
50-487
               

               
Cow position:
               
chr1:55229767-55230213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 182
               

               
Conread position:
               
50-488
               

               
Cow position:
               
chr1:44506751-44507222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
50-488
               

               
Cow position:
               
chr1:53520689-53521143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 158
               

               
Conread position:
               
50-491
               

               
Cow position:
               
chr1:35162186-35162649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 207
               

               
Conread position:
               
50-493
               

               
Cow position:
               
chr1:76222908-76222453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 129
               

               
Conread position:
               
50-500
               

               
Cow position:
               
chr1:84239324-84238870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
141, 58
               

               
Conread position:
               
50-518
               

               
Cow position:
               
chr1:78857540-78857066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
56, 105
               

               
Conread position:
               
50-521
               

               
Cow position:
               
chr1:24133273-24132792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
54, 77
               

               
Conread position:
               
50-521
               

               
Cow position:
               
chr1:77620333-77620813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
46, 116
               

               
Conread position:
               
50-528
               

               
Cow position:
               
chr1:52994806-52995291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
50-530
               

               
Cow position:
               
chr1:45020021-45019510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 100
               

               
Conread position:
               
50-532
               

               
Cow position:
               
chr1:56229037-56229530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
70, 100
               

               
Conread position:
               
51-352
               

               
Cow position:
               
chr1:89485368-89485675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
51-394
               

               
Cow position:
               
chr1:95100745-95101086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
53, 132
               

               
Conread position:
               
51-438
               

               
Cow position:
               
chr1:85028743-85029140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 83
               

               
Conread position:
               
52-204
               

               
Cow position:
               
chr1:92517786-92517634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
92, 65
               

               
Conread position:
               
52-295
               

               
Cow position:
               
chr1:98372415-98372663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 8
               

               
Conread position:
               
52-327
               

               
Cow position:
               
chr1:55135618-55135900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
52-367
               

               
Cow position:
               
chr1:54207034-54206707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 101
               

               
Conread position:
               
52-400
               

               
Cow position:
               
chr1:71079172-71078817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
52-432
               

               
Cow position:
               
chr1:97755306-97755699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
139, 75
               

               
Conread position:
               
52-476
               

               
Cow position:
               
chr1:95017731-95017316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 100
               

               
Conread position:
               
53-196
               

               
Cow position:
               
chr1:52496567-52496717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr1:64160126-64160289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
67, 149
               

               
Conread position:
               
53-221
               

               
Cow position:
               
chr1:83982591-83982412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
53-237
               

               
Cow position:
               
chr1:20125397-20125587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
98, 55
               

               
Conread position:
               
53-254
               

               
Cow position:
               
chr1:34000691-34000900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 156
               

               
Conread position:
               
53-257
               

               
Cow position:
               
chr1:91142371-91142164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
48, 81
               

               
Conread position:
               
53-292
               

               
Cow position:
               
chr1:38544661-38544436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
206, 11
               

               
Conread position:
               
53-293
               

               
Cow position:
               
chr1:11770508-11770263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
58, 153
               

               
Conread position:
               
53-304
               

               
Cow position:
               
chr1:68995957-68996219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
55, 196
               

               
Conread position:
               
53-305
               

               
Cow position:
               
chr1:57635252-57635504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
58, 85
               

               
Conread position:
               
53-319
               

               
Cow position:
               
chr1:99136645-99136374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
51, 100
               

               
Conread position:
               
53-323
               

               
Cow position:
               
chr1:7442770-7443036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
58, 90
               

               
Conread position:
               
53-323
               

               
Cow position:
               
chr1:21508173-21508453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
20, 153
               

               
Conread position:
               
53-326
               

               
Cow position:
               
chr1:3323644-3323931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
48, 155
               

               
Conread position:
               
53-326
               

               
Cow position:
               
chr1:60707189-60707466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
51, 146
               

               
Conread position:
               
53-326
               

               
Cow position:
               
chr1:85596730-85597001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
103, 44
               

               
Conread position:
               
53-349
               

               
Cow position:
               
chr1:10655263-10655567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 101
               

               
Conread position:
               
53-357
               

               
Cow position:
               
chr1:20204812-20205127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
54, 151
               

               
Conread position:
               
53-357
               

               
Cow position:
               
chr1:34771718-34771403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 102
               

               
Conread position:
               
53-361
               

               
Cow position:
               
chr1:81563519-81563849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
53-362
               

               
Cow position:
               
chr1:81355918-81355598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 77
               

               
Conread position:
               
53-362
               

               
Cow position:
               
chr1:98461076-98461391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
53-362
               

               
Cow position:
               
chr1:101822712-101822409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 58
               

               
Conread position:
               
53-366
               

               
Cow position:
               
chr1:94226762-94226446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
59, 94
               

               
Conread position:
               
53-366
               

               
Cow position:
               
chr1:98030700-98031031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 106
               

               
Conread position:
               
53-366
               

               
Cow position:
               
chr1:100705918-100706235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
53-370
               

               
Cow position:
               
chr1:10778359-10778676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 77
               

               
Conread position:
               
53-370
               

               
Cow position:
               
chr1:37707183-37706864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
51, 105
               

               
Conread position:
               
53-370
               

               
Cow position:
               
chr1:53458492-53458808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
142, 55
               

               
Conread position:
               
53-370
               

               
Cow position:
               
chr1:67821424-67821110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
56, 88
               

               
Conread position:
               
53-374
               

               
Cow position:
               
chr1:68854960-68855283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
112, 96
               

               
Conread position:
               
53-375
               

               
Cow position:
               
chr1:19885170-19885499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 106
               

               
Conread position:
               
53-394
               

               
Cow position:
               
chr1:47233689-47233342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 96
               

               
Conread position:
               
53-402
               

               
Cow position:
               
chr1:25383448-25383816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
61, 102
               

               
Conread position:
               
53-438
               

               
Cow position:
               
chr1:61392006-61391592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 26
               

               
Conread position:
               
53-438
               

               
Cow position:
               
chr1:74956238-74955828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 154
               

               
Conread position:
               
53-440
               

               
Cow position:
               
chr1:93528476-93528900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 202
               

               
Conread position:
               
53-441
               

               
Cow position:
               
chr1:40599834-40600232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
137, 50
               

               
Conread position:
               
53-442
               

               
Cow position:
               
chr1:102784746-102785154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
53-444
               

               
Cow position:
               
chr1:64678483-64678890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
54, 116
               

               
Conread position:
               
53-455
               

               
Cow position:
               
chr1:61564578-61565002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
51, 104
               

               
Conread position:
               
53-537
               

               
Cow position:
               
chr1:74084406-74083913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 33
               

               
Conread position:
               
54-196
               

               
Cow position:
               
chr1:3757739-3757890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
54-217
               

               
Cow position:
               
chr1:54732671-54732514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
137, 54
               

               
Conread position:
               
54-312
               

               
Cow position:
               
chr1:89742225-89741951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 164
               

               
Conread position:
               
54-320
               

               
Cow position:
               
chr1:63596273-63595997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 158
               

               
Conread position:
               
54-326
               

               
Cow position:
               
chr1:78809670-78809939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
50, 75
               

               
Conread position:
               
54-357
               

               
Cow position:
               
chr1:40482625-40482313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
92, 21
               

               
Conread position:
               
54-358
               

               
Cow position:
               
chr1:20384834-20384522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
50, 100
               

               
Conread position:
               
54-366
               

               
Cow position:
               
chr1:53308606-53308285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 146
               

               
Conread position:
               
54-366
               

               
Cow position:
               
chr1:56711835-56711494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
47, 74
               

               
Conread position:
               
54-366
               

               
Cow position:
               
chr1:101834623-101834924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
141, 49
               

               
Conread position:
               
54-370
               

               
Cow position:
               
chr1:98360622-98360291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 159
               

               
Conread position:
               
54-373
               

               
Cow position:
               
chr1:64251265-64250936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
54-428
               

               
Cow position:
               
chr1:100400415-100400010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
54, 287
               

               
Conread position:
               
54-443
               

               
Cow position:
               
chr1:732138-731759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
207, 73
               

               
Conread position:
               
54-471
               

               
Cow position:
               
chr1:97954662-97954245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
55-236
               

               
Cow position:
               
chr1:33701908-33702091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 159
               

               
Conread position:
               
55-284
               

               
Cow position:
               
chr1:68912539-68912759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 82
               

               
Conread position:
               
55-286
               

               
Cow position:
               
chr1:44164866-44165108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
55, 99
               

               
Conread position:
               
55-286
               

               
Cow position:
               
chr1:56748377-56748623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 152
               

               
Conread position:
               
55-292
               

               
Cow position:
               
chr1:5873184-5872939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
56, 148
               

               
Conread position:
               
55-295
               

               
Cow position:
               
chr1:47008818-47009064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
49, 76
               

               
Conread position:
               
55-320
               

               
Cow position:
               
chr1:38753709-38753980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
15, 5
               

               
Conread position:
               
55-326
               

               
Cow position:
               
chr1:12222817-12222544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
59, 188
               

               
Conread position:
               
55-326
               

               
Cow position:
               
chr1:94875891-94875611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 95
               

               
Conread position:
               
55-348
               

               
Cow position:
               
chr1:57247225-57247520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
55-350
               

               
Cow position:
               
chr1:90868648-90868348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 95
               

               
Conread position:
               
55-362
               

               
Cow position:
               
chr1:8349523-8349220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
73, 84
               

               
Conread position:
               
55-362
               

               
Cow position:
               
chr1:99642582-99642264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 102
               

               
Conread position:
               
55-364
               

               
Cow position:
               
chr1:102349970-102349643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
47, 151
               

               
Conread position:
               
55-365
               

               
Cow position:
               
chr1:27145866-27145545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
50, 102
               

               
Conread position:
               
55-371
               

               
Cow position:
               
chr1:80899895-80900233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 157
               

               
Conread position:
               
55-373
               

               
Cow position:
               
chr1:83747727-83748058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
31, 105
               

               
Conread position:
               
55-404
               

               
Cow position:
               
chr1:15691125-15691481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
55-406
               

               
Cow position:
               
chr1:30441744-30442110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 77
               

               
Conread position:
               
55-428
               

               
Cow position:
               
chr1:25793651-25793264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 151
               

               
Conread position:
               
55-429
               

               
Cow position:
               
chr1:88911102-88910729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
53, 96
               

               
Conread position:
               
55-435
               

               
Cow position:
               
chr1:19465850-19466237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 69
               

               
Conread position:
               
55-435
               

               
Cow position:
               
chr1:66355921-66355532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
181, 94
               

               
Conread position:
               
55-435
               

               
Cow position:
               
chr1:69415930-69415528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
55-437
               

               
Cow position:
               
chr1:78791518-78791124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 109
               

               
Conread position:
               
55-438
               

               
Cow position:
               
chr1:35170124-35170512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 125
               

               
Conread position:
               
55-438
               

               
Cow position:
               
chr1:70534146-70533753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
33, 124
               

               
Conread position:
               
55-438
               

               
Cow position:
               
chr1:82378582-82378976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
132, 52
               

               
Conread position:
               
55-448
               

               
Cow position:
               
chr1:71135940-71136345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 95
               

               
Conread position:
               
55-456
               

               
Cow position:
               
chr1:63504126-63504537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
55-463
               

               
Cow position:
               
chr1:64189290-64189711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
19, 118
               

               
Conread position:
               
55-529
               

               
Cow position:
               
chr1:34685982-34686444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 100
               

               
Conread position:
               
56-287
               

               
Cow position:
               
chr1:51818730-51818965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
57-362
               

               
Cow position:
               
chr1:62291896-62291596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
135, 67
               

               
Conread position:
               
57-435
               

               
Cow position:
               
chr1:15050148-15050521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
57-470
               

               
Cow position:
               
chr1:75382781-75383200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 102
               

               
Conread position:
               
58-287
               

               
Cow position:
               
chr1:41954463-41954218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
58-362
               

               
Cow position:
               
chr1:92433809-92434104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
134, 49
               

               
Conread position:
               
58-369
               

               
Cow position:
               
chr1:70538394-70538723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 99
               

               
Conread position:
               
58-370
               

               
Cow position:
               
chr1:41252612-41252297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
46, 100
               

               
Conread position:
               
58-373
               

               
Cow position:
               
chr1:85162757-85162431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
58-437
               

               
Cow position:
               
chr1:93110831-93110429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 97
               

               
Conread position:
               
58-438
               

               
Cow position:
               
chr1:7143058-7142676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
50, 127
               

               
Conread position:
               
58-438
               

               
Cow position:
               
chr1:21934381-21933998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
109, 140
               

               
Conread position:
               
58-438
               

               
Cow position:
               
chr1:90423295-90422897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 87
               

               
Conread position:
               
58-445
               

               
Cow position:
               
chr1:87888193-87888601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
40, 64
               

               
Conread position:
               
58-473
               

               
Cow position:
               
chr1:95056846-95057254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
46, 93
               

               
Conread position:
               
58-540
               

               
Cow position:
               
chr1:29935591-29935109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
59-326
               

               
Cow position:
               
chr1:21955582-21955310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 174
               

               
Conread position:
               
59-400
               

               
Cow position:
               
chr1:197216-196861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
45, 95
               

               
Conread position:
               
59-435
               

               
Cow position:
               
chr1:71045546-71045936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
59-494
               

               
Cow position:
               
chr1:95765297-95764852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
29, 109
               

               
Conread position:
               
60-438
               

               
Cow position:
               
chr1:20000956-20000552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
61-517
               

               
Cow position:
               
chr1:86279208-86279678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
63-326
               

               
Cow position:
               
chr1:72103642-72103913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
42, 142
               

               
Conread position:
               
64-217
               

               
Cow position:
               
chr1:52329732-52329574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 67
               

               
Conread position:
               
64-238
               

               
Cow position:
               
chr1:98619003-98619185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
64-262
               

               
Cow position:
               
chr1:96184211-96184019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 28
               

               
Conread position:
               
64-271
               

               
Cow position:
               
chr1:41004571-41004353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 94
               

               
Conread position:
               
64-276
               

               
Cow position:
               
chr1:32013753-32013966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 163
               

               
Conread position:
               
64-302
               

               
Cow position:
               
chr1:73561853-73561608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 136
               

               
Conread position:
               
64-312
               

               
Cow position:
               
chr1:98310858-98311119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 145
               

               
Conread position:
               
64-326
               

               
Cow position:
               
chr1:95654919-95654650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 93
               

               
Conread position:
               
64-351
               

               
Cow position:
               
chr1:57639724-57639428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
47, 62
               

               
Conread position:
               
64-361
               

               
Cow position:
               
chr1:56634895-56635202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
47, 101
               

               
Conread position:
               
64-361
               

               
Cow position:
               
chr1:101867152-101867453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
60, 97
               

               
Conread position:
               
64-362
               

               
Cow position:
               
chr1:3790259-3789964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
64-362
               

               
Cow position:
               
chr1:75141803-75142102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 126
               

               
Conread position:
               
64-362
               

               
Cow position:
               
chr1:100800152-100800458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
47, 88
               

               
Conread position:
               
64-373
               

               
Cow position:
               
chr1:99512456-99512150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
41, 93
               

               
Conread position:
               
64-434
               

               
Cow position:
               
chr1:10064182-10063805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 93
               

               
Conread position:
               
64-438
               

               
Cow position:
               
chr1:23969240-23968860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
64-446
               

               
Cow position:
               
chr1:100450388-100449980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
44, 371
               

               
Conread position:
               
64-480
               

               
Cow position:
               
chr1:68862832-68863267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
64-486
               

               
Cow position:
               
chr1:5135895-5135492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
46, 63
               

               
Conread position:
               
64-494
               

               
Cow position:
               
chr1:53495260-53495682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
44, 165
               

               
Conread position:
               
65-326
               

               
Cow position:
               
chr1:16962216-16961947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
43, 178
               

               
Conread position:
               
65-326
               

               
Cow position:
               
chr1:63138636-63138904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 140
               

               
Conread position:
               
65-362
               

               
Cow position:
               
chr1:100741089-100741383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
129, 84
               

               
Conread position:
               
65-414
               

               
Cow position:
               
chr1:55357488-55357139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
43, 137
               

               
Conread position:
               
65-445
               

               
Cow position:
               
chr1:99570667-99570287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 146
               

               
Conread position:
               
65-446
               

               
Cow position:
               
chr1:4414410-4414017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 91
               

               
Conread position:
               
65-473
               

               
Cow position:
               
chr1:56477392-56477822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 73
               

               
Conread position:
               
65-476
               

               
Cow position:
               
chr1:28563771-28563335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 132
               

               
Conread position:
               
65-476
               

               
Cow position:
               
chr1:46030555-46030121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
126, 137
               

               
Conread position:
               
65-509
               

               
Cow position:
               
chr1:96305171-96304715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 55
               

               
Conread position:
               
66-269
               

               
Cow position:
               
chr1:8532417-8532208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 137
               

               
Conread position:
               
66-273
               

               
Cow position:
               
chr1:89438137-89437929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 87
               

               
Conread position:
               
66-371
               

               
Cow position:
               
chr1:66430095-66430405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 108
               

               
Conread position:
               
66-474
               

               
Cow position:
               
chr1:43340824-43340398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 177
               

               
Conread position:
               
67-218
               

               
Cow position:
               
chr1:36613475-36613320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 88
               

               
Conread position:
               
67-285
               

               
Cow position:
               
chr1:15311668-15311884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 66
               

               
Conread position:
               
67-362
               

               
Cow position:
               
chr1:94261347-94261641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
227, 58
               

               
Conread position:
               
67-400
               

               
Cow position:
               
chr1:15333677-15334033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
41, 85
               

               
Conread position:
               
68-217
               

               
Cow position:
               
chr1:7449933-7450084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 131
               

               
Conread position:
               
68-295
               

               
Cow position:
               
chr1:81470929-81471164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
38, 91
               

               
Conread position:
               
68-305
               

               
Cow position:
               
chr1:60032798-60032557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
45, 165
               

               
Conread position:
               
68-326
               

               
Cow position:
               
chr1:84906267-84906000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
68-374
               

               
Cow position:
               
chr1:24542781-24542453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
69-326
               

               
Cow position:
               
chr1:51654212-51654487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
42, 134
               

               
Conread position:
               
70-293
               

               
Cow position:
               
chr1:64421133-64421360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
70-366
               

               
Cow position:
               
chr1:43872532-43872211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
70-371
               

               
Cow position:
               
chr1:90976280-90975975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
76, 130
               

               
Conread position:
               
71-435
               

               
Cow position:
               
chr1:40192874-40192502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
188, 34
               

               
Conread position:
               
72-196
               

               
Cow position:
               
chr1:10030344-10030472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
72-326
               

               
Cow position:
               
chr1:6788485-6788220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 87
               

               
Conread position:
               
72-326
               

               
Cow position:
               
chr1:88926575-88926319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
90, 52
               

               
Conread position:
               
72-393
               

               
Cow position:
               
chr1:89497770-89498082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
42, 83
               

               
Conread position:
               
73-333
               

               
Cow position:
               
chr1:82443651-82443387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
35, 130
               

               
Conread position:
               
73-366
               

               
Cow position:
               
chr1:32001515-32001212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
73-435
               

               
Cow position:
               
chr1:9533980-9534343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
73-441
               

               
Cow position:
               
chr1:34767133-34767501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
53, 61
               

               
Conread position:
               
74-476
               

               
Cow position:
               
chr1:86110914-86110517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
123, 19
               

               
Conread position:
               
75-229
               

               
Cow position:
               
chr1:97806596-97806754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
75-286
               

               
Cow position:
               
chr1:83594000-83593786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
31, 132
               

               
Conread position:
               
75-287
               

               
Cow position:
               
chr1:56674322-56674103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
75-373
               

               
Cow position:
               
chr1:51394232-51394535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
32, 54
               

               
Conread position:
               
75-400
               

               
Cow position:
               
chr1:83072251-83072587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
76-326
               

               
Cow position:
               
chr1:73546098-73545848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 124
               

               
Conread position:
               
76-374
               

               
Cow position:
               
chr1:33331280-33330977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
28, 84
               

               
Conread position:
               
78-323
               

               
Cow position:
               
chr1:92369539-92369798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
30, 81
               

               
Conread position:
               
78-326
               

               
Cow position:
               
chr1:71227887-71228155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 245
               

               
Conread position:
               
78-374
               

               
Cow position:
               
chr1:49317683-49317379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
12, 125
               

               
Conread position:
               
79-326
               

               
Cow position:
               
chr1:14309219-14308969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 8
               

               
Conread position:
               
79-356
               

               
Cow position:
               
chr1:43703226-43703508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
112, 18
               

               
Conread position:
               
79-357
               

               
Cow position:
               
chr1:54156929-54156635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
29, 147
               

               
Conread position:
               
80-323
               

               
Cow position:
               
chr1:24445816-24445568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
82-429
               

               
Cow position:
               
chr1:75933090-75933444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
11, 70
               

               
Conread position:
               
83-245
               

               
Cow position:
               
chr1:89082923-89083092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
83-295
               

               
Cow position:
               
chr1:3243754-3243967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
37, 119
               

               
Conread position:
               
83-305
               

               
Cow position:
               
chr1:99039537-99039313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
83-324
               

               
Cow position:
               
chr1:26447271-26447502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
148, 47
               

               
Conread position:
               
83-326
               

               
Cow position:
               
chr1:42398381-42398128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
25, 122
               

               
Conread position:
               
83-362
               

               
Cow position:
               
chr1:68763866-68763583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
83-366
               

               
Cow position:
               
chr1:86578764-86579071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
83-380
               

               
Cow position:
               
chr1:484650-484343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
43, 119
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:61742647-61742401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
30, 162
               

               
Conread position:
               
85-287
               

               
Cow position:
               
chr1:81638224-81638428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
61, 163
               

               
Conread position:
               
85-295
               

               
Cow position:
               
chr1:51684628-51684838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
106, 20
               

               
Conread position:
               
85-366
               

               
Cow position:
               
chr1:24778161-24777885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
106, 29
               

               
Conread position:
               
85-366
               

               
Cow position:
               
chr1:63530398-63530667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
174, 41
               

               
Conread position:
               
85-366
               

               
Cow position:
               
chr1:65318399-65318683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
87-326
               

               
Cow position:
               
chr1:65905188-65904935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
87-372
               

               
Cow position:
               
chr1:12978505-12978797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
105, 21
               

               
Conread position:
               
88-287
               

               
Cow position:
               
chr1:100812744-100812552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
168, 9
               

               
Conread position:
               
88-438
               

               
Cow position:
               
chr1:20667921-20667546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 65
               

               
Conread position:
               
89-327
               

               
Cow position:
               
chr1:182635-182868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
103, 35
               

               
Conread position:
               
90-366
               

               
Cow position:
               
chr1:101632511-101632228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 5
               

               
Conread position:
               
90-436
               

               
Cow position:
               
chr1:5579887-5580234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
101, 16
               

               
Conread position:
               
91-434
               

               
Cow position:
               
chr1:96472279-96472615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
107, 7
               

               
Conread position:
               
96-374
               

               
Cow position:
               
chr1:91811620-91811895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
163, 55
               

               
Conread position:
               
97-295
               

               
Cow position:
               
chr1:74927715-74927915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
98-362
               

               
Cow position:
               
chr1:22525716-22525983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 16
               

               
Conread position:
               
98-400
               

               
Cow position:
               
chr1:59518756-59519056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
142, 5
               

               
Conread position:
               
98-496
               

               
Cow position:
               
chr1:23099735-23100138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 5
               

               
Conread position:
               
99-366
               

               
Cow position:
               
chr1:77133595-77133861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
99-425
               

               
Cow position:
               
chr1:101280880-101280546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
143, 61
               

               
Conread position:
               
101-498
               

               
Cow position:
               
chr1:31272604-31272197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
103-346
               

               
Cow position:
               
chr1:101946867-101946625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
103-370
               

               
Cow position:
               
chr1:91875071-91874804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
17, 41
               

               
Conread position:
               
103-385
               

               
Cow position:
               
chr1:24876105-24876390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 88
               

               
Conread position:
               
103-438
               

               
Cow position:
               
chr1:51417616-51417969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
103-446
               

               
Cow position:
               
chr1:42545944-42545587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
89, 22
               

               
Conread position:
               
103-484
               

               
Cow position:
               
chr1:101866657-101866267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
126, 63
               

               
Conread position:
               
104-312
               

               
Cow position:
               
chr1:80631543-80631748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
59, 19
               

               
Conread position:
               
104-326
               

               
Cow position:
               
chr1:31608053-31607826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
104-366
               

               
Cow position:
               
chr1:55429115-55428847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 62
               

               
Conread position:
               
104-366
               

               
Cow position:
               
chr1:77683198-77683461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
84, 56
               

               
Conread position:
               
104-366
               

               
Cow position:
               
chr1:97938810-97939066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
104-374
               

               
Cow position:
               
chr1:33207030-33206763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
190, 48
               

               
Conread position:
               
104-374
               

               
Cow position:
               
chr1:97696581-97696861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
61, 96
               

               
Conread position:
               
104-409
               

               
Cow position:
               
chr1:95557877-95558188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
88, 77
               

               
Conread position:
               
104-489
               

               
Cow position:
               
chr1:72105255-72105638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
88, 11
               

               
Conread position:
               
106-475
               

               
Cow position:
               
chr1:541650-542018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
162, 28
               

               
Conread position:
               
107-362
               

               
Cow position:
               
chr1:14206312-14206048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
108, 87
               

               
Conread position:
               
107-366
               

               
Cow position:
               
chr1:22192607-22192878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 97
               

               
Conread position:
               
107-403
               

               
Cow position:
               
chr1:93554687-93554985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
149, 83
               

               
Conread position:
               
107-438
               

               
Cow position:
               
chr1:74947279-74946935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
74, 42
               

               
Conread position:
               
108-283
               

               
Cow position:
               
chr1:85826191-85826366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 22
               

               
Conread position:
               
108-320
               

               
Cow position:
               
chr1:87095386-87095157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
80, 91
               

               
Conread position:
               
108-323
               

               
Cow position:
               
chr1:19568697-19568910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
108-366
               

               
Cow position:
               
chr1:98413611-98413881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
108-380
               

               
Cow position:
               
chr1:88913162-88913442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
109-249
               

               
Cow position:
               
chr1:73536587-73536724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
109-293
               

               
Cow position:
               
chr1:6961754-6961937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
110-362
               

               
Cow position:
               
chr1:23512808-23512555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
149, 41
               

               
Conread position:
               
110-366
               

               
Cow position:
               
chr1:57420881-57420627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
88, 135
               

               
Conread position:
               
112-284
               

               
Cow position:
               
chr1:68245459-68245285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
112-374
               

               
Cow position:
               
chr1:65909375-65909627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
82, 151
               

               
Conread position:
               
112-435
               

               
Cow position:
               
chr1:41115866-41115535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
79, 39
               

               
Conread position:
               
113-289
               

               
Cow position:
               
chr1:70312955-70312781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
114-435
               

               
Cow position:
               
chr1:30047740-30047426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
116-393
               

               
Cow position:
               
chr1:91023615-91023332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 44
               

               
Conread position:
               
116-402
               

               
Cow position:
               
chr1:87197680-87197967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
117, 35
               

               
Conread position:
               
120-326
               

               
Cow position:
               
chr1:2976138-2975931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
122-367
               

               
Cow position:
               
chr1:29451777-29452029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 76
               

               
Conread position:
               
125-326
               

               
Cow position:
               
chr1:92997037-92996828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 95
               

               
Conread position:
               
125-366
               

               
Cow position:
               
chr1:85550216-85549969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
67, 34
               

               
Conread position:
               
125-394
               

               
Cow position:
               
chr1:89448759-89449037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
66, 26
               

               
Conread position:
               
125-435
               

               
Cow position:
               
chr1:39225063-39224738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
125-435
               

               
Cow position:
               
chr1:90595693-90595376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
132-372
               

               
Cow position:
               
chr1:64572382-64572630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
141-304
               

               
Cow position:
               
chr1:26895097-26894935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
118, 19
               

               
Conread position:
               
141-370
               

               
Cow position:
               
chr1:7022999-7023234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 11
               

               
Conread position:
               
145-366
               

               
Cow position:
               
chr1:72813495-72813725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
47, 56
               

               
Conread position:
               
147-366
               

               
Cow position:
               
chr1:61543035-61542810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
43, 52
               

               
Conread position:
               
149-295
               

               
Cow position:
               
chr1:71716395-71716541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 72
               

               
Conread position:
               
150-326
               

               
Cow position:
               
chr1:8984799-8984619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 49
               

               
Conread position:
               
150-366
               

               
Cow position:
               
chr1:6826403-6826190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
109, 41
               

               
Conread position:
               
150-394
               

               
Cow position:
               
chr1:89785797-89786045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 84
               

               
Conread position:
               
152-326
               

               
Cow position:
               
chr1:5539386-5539213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
107, 37
               

               
Conread position:
               
152-326
               

               
Cow position:
               
chr1:87936787-87936961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 92
               

               
Conread position:
               
152-394
               

               
Cow position:
               
chr1:81580062-81580313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
152-401
               

               
Cow position:
               
chr1:78697881-78697628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 29
               

               
Conread position:
               
152-431
               

               
Cow position:
               
chr1:81582010-81582292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 61
               

               
Conread position:
               
153-374
               

               
Cow position:
               
chr1:56225682-56225902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
64, 35
               

               
Conread position:
               
153-394
               

               
Cow position:
               
chr1:56618762-56618517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
39, 47
               

               
Conread position:
               
153-481
               

               
Cow position:
               
chr1:78794336-78794005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
36, 46
               

               
Conread position:
               
153-483
               

               
Cow position:
               
chr1:42482092-42482425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
38, 46
               

               
Conread position:
               
154-326
               

               
Cow position:
               
chr1:92989479-92989653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
154-366
               

               
Cow position:
               
chr1:43311886-43311662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 49
               

               
Conread position:
               
154-425
               

               
Cow position:
               
chr1:26427972-26427689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
154-438
               

               
Cow position:
               
chr1:88338554-88338854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 19
               

               
Conread position:
               
156-375
               

               
Cow position:
               
chr1:48769694-48769920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
157-287
               

               
Cow position:
               
chr1:70291462-70291592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
83, 95
               

               
Conread position:
               
163-429
               

               
Cow position:
               
chr1:24406995-24406719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
163-439
               

               
Cow position:
               
chr1:42541495-42541796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
164-394
               

               
Cow position:
               
chr1:186371-186143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
165-387
               

               
Cow position:
               
chr1:45223482-45223710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
167-370
               

               
Cow position:
               
chr1:30189049-30189265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
170-350
               

               
Cow position:
               
chr1:100474137-100474327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
172-370
               

               
Cow position:
               
chr1:49825162-49824951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr1:50991844-50992046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
176-462
               

               
Cow position:
               
chr1:59147427-59147137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
74, 5
               

               
Conread position:
               
177-393
               

               
Cow position:
               
chr1:65103532-65103751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
207-438
               

               
Cow position:
               
chr1:30504445-30504668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
53, 37
               

               
Conread position:
               
207-438
               

               
Cow position:
               
chr1:64218485-64218244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
208-539
               

               
Cow position:
               
chr1:81481440-81481095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
24, 183
               

               
Conread position:
               
225-366
               

               
Cow position:
               
chr1:4581370-4581221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
234-438
               

               
Cow position:
               
chr1:74082010-74081797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
237-445
               

               
Cow position:
               
chr1:47402500-47402716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
238-438
               

               
Cow position:
               
chr1:5006135-5006348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
244-478
               

               
Cow position:
               
chr1:98636684-98636926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 116
               

               
Conread position:
               
245-425
               

               
Cow position:
               
chr1:99071110-99071303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
247-370
               

               
Cow position:
               
chr1:66752647-66752516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
250-438
               

               
Cow position:
               
chr1:64706480-64706673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
268-435
               

               
Cow position:
               
chr1:79663435-79663252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
272-438
               

               
Cow position:
               
chr1:22153702-22153868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 33
               

               
Conread position:
               
279-446
               

               
Cow position:
               
chr1:69498918-69498749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
368-492
               

               
Cow position:
               
chr1:85339511-85339634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
368-514
               

               
Cow position:
               
chr1:38706718-38706577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
40, 0
               
Show alignments to all cow chromosomes.