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Cow genome map

           
Conread name:
           
Ss1.1-rfhi4001b_p15.5
        

               
Conread position:
               
1-108
               

               
Cow position:
               
chr1:37726640-37726533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr1:36920898-36920784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-121
               

               
Cow position:
               
chr1:92976906-92976787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
1-130
               

               
Cow position:
               
chr1:20950430-20950559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-136
               

               
Cow position:
               
chr1:43822112-43822246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr1:29451609-29451750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr1:91370741-91370603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
1-154
               

               
Cow position:
               
chr1:41138619-41138469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-157
               

               
Cow position:
               
chr1:63311298-63311446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-157
               

               
Cow position:
               
chr1:72813150-72813298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr1:53207960-53207805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr1:80184004-80183846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr1:13637932-13637781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr1:61742233-61742076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr1:31358471-31358310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr1:49181789-49181951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr1:51980962-51981124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr1:61304416-61304574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:5562071-5561910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:88338432-88338593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:90297898-90298061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:2317904-2317743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 25
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:57957123-57956963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:96559077-96559236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:100132603-100132763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr1:52564057-52563900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 75
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr1:17450432-17450265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:46885829-46885996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr1:7022194-7022356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr1:42874212-42874048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr1:64678432-64678602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:67014119-67014286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr1:41093135-41092965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr1:1760179-1760359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr1:56228989-56229165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:65480948-65481134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:60665228-60665415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr1:61350882-61351071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr1:83184985-83185172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr1:40265405-40265213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr1:69407101-69407292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr1:98906566-98906376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:13614984-13614789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:24202004-24201823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:31341319-31341125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:31499362-31499552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:35769178-35769373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:53397719-53397915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:60910080-60910275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:73756828-73757012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:80336515-80336315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:101551192-101551388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:55163657-55163846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:42887526-42887327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:55686484-55686276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:60032863-60032654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:68253326-68253535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:88652366-88652574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
171, 27
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr1:11873620-11873415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr1:84786506-84786721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
167, 25
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr1:95017778-95017573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:10071112-10070895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:18196591-18196808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:22745362-22745571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:24133320-24133112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:30531039-30530824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:31414226-31414014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:32562543-32562326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:32630706-32630920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:35162139-35162356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
158, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:35491844-35491630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:36874750-36874960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:42256775-42256556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:43839262-43839475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:44769374-44769166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
165, 15
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:52754407-52754190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:53495197-53495415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:55260695-55260484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
171, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:56225212-56225413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
170, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:56412035-56412251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:57119609-57119398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:61175918-61176132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:61725378-61725165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:66138052-66138267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
159, 28
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:66491572-66491789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:68282529-68282748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:77720492-77720288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
170, 30
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:78689668-78689886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:80869841-80870062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:81569301-81569084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 160
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:89510197-89509976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
116, 27
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:91066413-91066206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
171, 27
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:94226813-94226605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr1:98551452-98551663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
171, 25
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr1:874378-874598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr1:7350273-7350490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr1:20125346-20125561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
38, 7
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr1:99642635-99642409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:3930124-3929900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:9593420-9593197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:26514616-26514392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:26811064-26810837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:28877091-28877319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:52354680-52354452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:57848106-57848335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:65390557-65390784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:85776466-85776238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:90913819-90914047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:1877762-1877988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:11226510-11226286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
173, 25
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:41696796-41697017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
163, 15
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:42968579-42968356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:53622700-53622918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
166, 25
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:54207081-54206863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:68217625-68217405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:71325512-71325289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:71748272-71748051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:80988081-80988304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:87888138-87888359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:101634436-101634661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr1:31765660-31765421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr1:36880013-36880246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr1:53595060-53595287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr1:58340908-58341146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr1:2219216-2218982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
127, 25
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr1:13548255-13548016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr1:22295703-22295464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr1:46940127-46939891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr1:78810770-78811004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
6, 28
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr1:81913417-81913187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr1:92370624-92370391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
217, 27
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr1:3381919-3381684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr1:29627180-29626943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 25
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr1:34300813-34300581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr1:89937628-89937388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 28
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr1:3456607-3456837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr1:6200304-6200544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr1:30372887-30373123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr1:52372149-52372385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr1:82861508-82861751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr1:84282796-84283044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:475874-476115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:11659378-11659616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:11665545-11665304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:15311603-15311840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:21091255-21091496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:34000640-34000884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:34197943-34198184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:41056419-41056649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:46354647-46354887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:79590835-79591078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:85361590-85361831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:91674226-91674467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:95592730-95592489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:97512651-97512890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:101822761-101822531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:10778309-10778541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
167, 27
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:15547204-15547445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:25553808-25554052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:39418383-39418147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
171, 25
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:69941233-69940993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:79663929-79663695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:91142420-91142182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:94211969-94212204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
166, 27
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr1:16855953-16855722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
171, 27
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr1:66430036-66430272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr1:69264557-69264785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
169, 25
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr1:11772346-11772091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr1:21572778-21573036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 23
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr1:54199645-54199399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr1:81613120-81613369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr1:18937098-18936853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr1:23634165-23633929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
171, 25
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr1:32631205-32631442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
158, 25
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr1:53374170-53374413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr1:96964054-96964302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
34, 25
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:1023072-1022819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:4027596-4027850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:7325033-7325286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:12607758-12607507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:26896090-26895844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:30034281-30034516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:33811669-33811910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:52941237-52940986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:60114765-60115018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:63435068-63434823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
174, 25
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:71946635-71946390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
171, 27
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:82504702-82504959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
119, 25
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:83082740-83082986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:85413270-85413521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:76207522-76207267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr1:43380294-43380040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr1:72624849-72625105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr1:73561914-73561664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr1:57698721-57698461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr1:78783281-78783532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr1:85596681-85596928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr1:68276142-68276400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
163, 25
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:22448849-22448597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
171, 25
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:90640760-90641018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
159, 27
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:52329793-52329538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:52753431-52753180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:81779664-81779926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:99136695-99136440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr1:101915904-101916164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
109, 25
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr1:60907096-60907368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr1:71691549-71691805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:73960435-73960700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
43, 160
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:8845614-8845876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:13451784-13452045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:31405747-31406009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:48735930-48736192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:80010959-80011221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:81670152-81669889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 247
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:87565245-87565507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:97171317-97171579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:1991695-1991414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:44154997-44155253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:52039372-52039642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
171, 25
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:53308657-53308385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:54258302-54258571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:78091767-78092044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:92437256-92436982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr1:20204760-20205040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr1:634926-635204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr1:666095-666376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr1:61735704-61735425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
38, 28
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr1:57577463-57577751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:5301095-5301384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:6499903-6500192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:41486607-41486896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:58386114-58386403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:67717337-67717048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:77223132-77223421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
2-111
               

               
Cow position:
               
chr1:60986705-60986816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
2-132
               

               
Cow position:
               
chr1:82880401-82880530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
2-152
               

               
Cow position:
               
chr1:26934801-26934655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
2-163
               

               
Cow position:
               
chr1:98494163-98494319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
2-164
               

               
Cow position:
               
chr1:3076653-3076503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
2-168
               

               
Cow position:
               
chr1:67577801-67577966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 132
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chr1:71779061-71779249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
50, 23
               

               
Conread position:
               
2-194
               

               
Cow position:
               
chr1:22628903-22628714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
2-194
               

               
Cow position:
               
chr1:40062184-40062376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
2-194
               

               
Cow position:
               
chr1:88970799-88970983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
153, 24
               

               
Conread position:
               
2-217
               

               
Cow position:
               
chr1:12222869-12222657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
2-217
               

               
Cow position:
               
chr1:21092827-21093039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
2-217
               

               
Cow position:
               
chr1:36613539-36613328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
2-217
               

               
Cow position:
               
chr1:47543408-47543619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 6
               

               
Conread position:
               
2-217
               

               
Cow position:
               
chr1:98380841-98380625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
2-225
               

               
Cow position:
               
chr1:60546534-60546304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
2-235
               

               
Cow position:
               
chr1:8358-8584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
2-235
               

               
Cow position:
               
chr1:33719850-33720086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
162, 24
               

               
Conread position:
               
2-235
               

               
Cow position:
               
chr1:52170848-52170612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
2-235
               

               
Cow position:
               
chr1:61724289-61724054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chr1:83982640-83982400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 6
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr1:49795736-49795971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr1:75403892-75404132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr1:84240636-84240863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
189, 24
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr1:95100699-95100928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr1:34159568-34159809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
123, 26
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr1:95176671-95176909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr1:60707139-60707383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:41004631-41004372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:26588945-26589207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr1:40599788-40600039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
167, 26
               

               
Conread position:
               
2-276
               

               
Cow position:
               
chr1:77462100-77462367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
170, 74
               

               
Conread position:
               
2-276
               

               
Cow position:
               
chr1:81355967-81355702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
217, 26
               

               
Conread position:
               
2-277
               

               
Cow position:
               
chr1:84255489-84255771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
2-277
               

               
Cow position:
               
chr1:100400465-100400189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
170, 24
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr1:76222955-76222681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr1:4032370-4032642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr1:81228595-81228324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
163, 24
               

               
Conread position:
               
2-303
               

               
Cow position:
               
chr1:82884649-82884355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
211, 27
               

               
Conread position:
               
3-118
               

               
Cow position:
               
chr1:3963356-3963470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr1:1348087-1347929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chr1:79844206-79844387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr1:52488221-52488023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
159, 23
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chr1:2169783-2169572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chr1:100800094-100800303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
169, 23
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr1:5409877-5409655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr1:47658092-47658305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
216, 23
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr1:90864563-90864334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr1:93499359-93499582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
3-250
               

               
Cow position:
               
chr1:31720224-31720476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
3-254
               

               
Cow position:
               
chr1:91817036-91816787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr1:15307771-15308025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
3-277
               

               
Cow position:
               
chr1:89342252-89341982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
169, 23
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr1:63391035-63390762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
161, 23
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr1:85028698-85028970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
171, 23
               

               
Conread position:
               
4-119
               

               
Cow position:
               
chr1:6961617-6961731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr1:21954480-21954323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
4-177
               

               
Cow position:
               
chr1:9437811-9437642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr1:61005828-61005652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
4-194
               

               
Cow position:
               
chr1:96193136-96192939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr1:54484806-54484997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
162, 22
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr1:8532476-8532270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
4-217
               

               
Cow position:
               
chr1:56711879-56711672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
168, 8
               

               
Conread position:
               
4-217
               

               
Cow position:
               
chr1:72286311-72286110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
168, 24
               

               
Conread position:
               
4-217
               

               
Cow position:
               
chr1:90836266-90836052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chr1:51394157-51394374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr1:52506806-52506581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
4-247
               

               
Cow position:
               
chr1:57305569-57305813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
4-254
               

               
Cow position:
               
chr1:4374600-4374353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
168, 22
               

               
Conread position:
               
4-254
               

               
Cow position:
               
chr1:96478432-96478683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
4-258
               

               
Cow position:
               
chr1:71257745-71257488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
4-259
               

               
Cow position:
               
chr1:86113675-86113413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
37, 25
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chr1:61564529-61564786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr1:101713854-101714125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr1:22467668-22467944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
4-282
               

               
Cow position:
               
chr1:35170075-35170347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
136, 30
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr1:50679547-50679269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
5-165
               

               
Cow position:
               
chr1:30882576-30882422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
5-165
               

               
Cow position:
               
chr1:52774782-52774626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
5-192
               

               
Cow position:
               
chr1:79465518-79465706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
5-193
               

               
Cow position:
               
chr1:4619131-4618940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chr1:56073723-56073526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 19
               

               
Conread position:
               
5-210
               

               
Cow position:
               
chr1:1981371-1981175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chr1:22826909-22827110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 10
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chr1:57639781-57639576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
155, 23
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr1:3340675-3340882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr1:5873232-5873024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
167, 21
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr1:12596164-12595957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr1:24235777-24235570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
167, 12
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr1:26702459-26702260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
140, 21
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr1:39702573-39702768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr1:80899847-80900064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 21
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chr1:72035190-72034976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chr1:11853951-11853727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr1:41252664-41252448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr1:67821471-67821252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr1:95327414-95327192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chr1:21835685-21835911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chr1:63596321-63596088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr1:84116141-84116365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
167, 21
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr1:732186-731971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr1:82406816-82406582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 102
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr1:56643857-56643616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
7, 109
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr1:45535441-45535687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr1:55146538-55146783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
5-250
               

               
Cow position:
               
chr1:68845742-68845504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
5-250
               

               
Cow position:
               
chr1:85774198-85774437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
5-254
               

               
Cow position:
               
chr1:78794996-78794755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
140, 21
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chr1:3323596-3323853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
5-259
               

               
Cow position:
               
chr1:21787065-21787322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
5-259
               

               
Cow position:
               
chr1:54478061-54478315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
5-259
               

               
Cow position:
               
chr1:82338046-82337790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
5-259
               

               
Cow position:
               
chr1:98562899-98563152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
53, 23
               

               
Conread position:
               
5-260
               

               
Cow position:
               
chr1:20384882-20384628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chr1:48105695-48105437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
5-277
               

               
Cow position:
               
chr1:197263-197001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
5-277
               

               
Cow position:
               
chr1:43505262-43505533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
5-326
               

               
Cow position:
               
chr1:77620289-77620605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
6-123
               

               
Cow position:
               
chr1:98023655-98023539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
6-162
               

               
Cow position:
               
chr1:100537550-100537708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
6-163
               

               
Cow position:
               
chr1:56408353-56408510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
6-165
               

               
Cow position:
               
chr1:52510503-52510348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
6-174
               

               
Cow position:
               
chr1:13455883-13456050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
6-189
               

               
Cow position:
               
chr1:77836514-77836336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
6-194
               

               
Cow position:
               
chr1:61884655-61884843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
6-208
               

               
Cow position:
               
chr1:56748330-56748532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
168, 20
               

               
Conread position:
               
6-214
               

               
Cow position:
               
chr1:3035254-3035049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 113
               

               
Conread position:
               
6-214
               

               
Cow position:
               
chr1:57576023-57575815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
6-216
               

               
Cow position:
               
chr1:12871267-12871064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
6-217
               

               
Cow position:
               
chr1:30413325-30413535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
6-217
               

               
Cow position:
               
chr1:68818056-68817852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
166, 20
               

               
Conread position:
               
6-217
               

               
Cow position:
               
chr1:74084449-74084248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
154, 20
               

               
Conread position:
               
6-218
               

               
Cow position:
               
chr1:81180240-81180026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
6-226
               

               
Cow position:
               
chr1:34685935-34686149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
6-226
               

               
Cow position:
               
chr1:63905734-63905513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
6-235
               

               
Cow position:
               
chr1:3137672-3137897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
6-235
               

               
Cow position:
               
chr1:51628762-51628531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr1:6941206-6941437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
211, 20
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr1:6958619-6958850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
211, 20
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr1:37309764-37309544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
171, 22
               

               
Conread position:
               
6-254
               

               
Cow position:
               
chr1:34856889-34856644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
6-255
               

               
Cow position:
               
chr1:31348168-31347931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
164, 20
               

               
Conread position:
               
6-260
               

               
Cow position:
               
chr1:97284637-97284387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
6-277
               

               
Cow position:
               
chr1:57635207-57635466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
154, 20
               

               
Conread position:
               
6-277
               

               
Cow position:
               
chr1:64251309-64251042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
166, 24
               

               
Conread position:
               
7-143
               

               
Cow position:
               
chr1:37887045-37886910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
7-158
               

               
Cow position:
               
chr1:79002213-79002073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
7-164
               

               
Cow position:
               
chr1:85783267-85783419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr1:39069210-39069008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr1:72012062-72011862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
165, 21
               

               
Conread position:
               
7-230
               

               
Cow position:
               
chr1:97820426-97820650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
7-235
               

               
Cow position:
               
chr1:31934254-31934480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr1:45007207-45007438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr1:49433516-49433280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
157, 19
               

               
Conread position:
               
8-163
               

               
Cow position:
               
chr1:64099521-64099372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
8-164
               

               
Cow position:
               
chr1:54294920-54294763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
8-171
               

               
Cow position:
               
chr1:81579505-81579668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
8-207
               

               
Cow position:
               
chr1:33716963-33717165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
8-209
               

               
Cow position:
               
chr1:27358685-27358889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
8-215
               

               
Cow position:
               
chr1:23969295-23969092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
8-215
               

               
Cow position:
               
chr1:38278303-38278089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
117, 18
               

               
Conread position:
               
8-216
               

               
Cow position:
               
chr1:69445114-69445310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
8-216
               

               
Cow position:
               
chr1:99609108-99609314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
164, 20
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr1:31871162-31871372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr1:42555012-42555210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
164, 18
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr1:48731086-48730881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
8-235
               

               
Cow position:
               
chr1:46693914-46693688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
8-235
               

               
Cow position:
               
chr1:69539441-69539665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
8-236
               

               
Cow position:
               
chr1:16767343-16767114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
8-241
               

               
Cow position:
               
chr1:25183867-25184105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
8-241
               

               
Cow position:
               
chr1:71119252-71119490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr1:45289131-45288891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr1:43285467-43285223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr1:68619195-68618951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
8-250
               

               
Cow position:
               
chr1:90868694-90868458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
8-254
               

               
Cow position:
               
chr1:79165350-79165098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
8-255
               

               
Cow position:
               
chr1:20799610-20799871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 236
               

               
Conread position:
               
8-255
               

               
Cow position:
               
chr1:99095105-99095349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
8-259
               

               
Cow position:
               
chr1:4290900-4291152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
151, 110
               

               
Conread position:
               
8-271
               

               
Cow position:
               
chr1:33701862-33702123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
8-274
               

               
Cow position:
               
chr1:22728789-22729057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
8-276
               

               
Cow position:
               
chr1:91800866-91800596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
32, 20
               

               
Conread position:
               
8-277
               

               
Cow position:
               
chr1:13413769-13414035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
210, 18
               

               
Conread position:
               
8-277
               

               
Cow position:
               
chr1:84812194-84811935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:73584660-73584399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
9-156
               

               
Cow position:
               
chr1:40292221-40292076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
130, 17
               

               
Conread position:
               
9-166
               

               
Cow position:
               
chr1:42728240-42728086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
9-166
               

               
Cow position:
               
chr1:50765100-50765255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
9-217
               

               
Cow position:
               
chr1:50634663-50634454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
9-217
               

               
Cow position:
               
chr1:61392048-61391842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
161, 19
               

               
Conread position:
               
9-217
               

               
Cow position:
               
chr1:100551713-100551916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr1:44164822-44165056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
156, 20
               

               
Conread position:
               
9-246
               

               
Cow position:
               
chr1:101547299-101547055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
10-203
               

               
Cow position:
               
chr1:98577216-98577409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 113
               

               
Conread position:
               
10-206
               

               
Cow position:
               
chr1:3757696-3757892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
10-217
               

               
Cow position:
               
chr1:19998291-19998094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
10-217
               

               
Cow position:
               
chr1:45555106-45555311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
10-226
               

               
Cow position:
               
chr1:97620096-97619878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
107, 18
               

               
Conread position:
               
10-230
               

               
Cow position:
               
chr1:97806536-97806751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
10-238
               

               
Cow position:
               
chr1:100421587-100421803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chr1:68827161-68826931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
138, 16
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chr1:92963143-92963369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 8
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chr1:102826069-102825844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
107, 16
               

               
Conread position:
               
10-247
               

               
Cow position:
               
chr1:47008771-47009011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
10-254
               

               
Cow position:
               
chr1:29935637-29935400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
10-254
               

               
Cow position:
               
chr1:87216206-87216445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
11-158
               

               
Cow position:
               
chr1:88029030-88029173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
11-165
               

               
Cow position:
               
chr1:6240361-6240503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
11-216
               

               
Cow position:
               
chr1:3752198-3751993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr1:1956584-1956353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
12-214
               

               
Cow position:
               
chr1:99118131-99118333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
12-218
               

               
Cow position:
               
chr1:72141310-72141511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
12-254
               

               
Cow position:
               
chr1:37707223-37706986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
12-279
               

               
Cow position:
               
chr1:75744606-75744869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
12-279
               

               
Cow position:
               
chr1:96713068-96712801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
13-204
               

               
Cow position:
               
chr1:5135944-5135760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
160, 13
               

               
Conread position:
               
13-217
               

               
Cow position:
               
chr1:11770546-11770343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
159, 13
               

               
Conread position:
               
13-217
               

               
Cow position:
               
chr1:95035607-95035411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
151, 16
               

               
Conread position:
               
13-238
               

               
Cow position:
               
chr1:36931906-36932128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
13-241
               

               
Cow position:
               
chr1:3776867-3776644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
14-158
               

               
Cow position:
               
chr1:42360014-42360159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
14-217
               

               
Cow position:
               
chr1:64160089-64160287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 12
               

               
Conread position:
               
14-238
               

               
Cow position:
               
chr1:95215438-95215210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
14-248
               

               
Cow position:
               
chr1:56657789-56658013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
203, 12
               

               
Conread position:
               
14-267
               

               
Cow position:
               
chr1:14379782-14379539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
15-217
               

               
Cow position:
               
chr1:24528849-24528661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
157, 11
               

               
Conread position:
               
15-217
               

               
Cow position:
               
chr1:57900992-57900793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
15-225
               

               
Cow position:
               
chr1:89395340-89395559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
15-236
               

               
Cow position:
               
chr1:57637121-57637336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
15-236
               

               
Cow position:
               
chr1:75967185-75967400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
15-241
               

               
Cow position:
               
chr1:49131373-49131142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
15-248
               

               
Cow position:
               
chr1:28176749-28176989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
153, 11
               

               
Conread position:
               
15-249
               

               
Cow position:
               
chr1:7442732-7442966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
13, 36
               

               
Conread position:
               
15-259
               

               
Cow position:
               
chr1:71253806-71253563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
15-269
               

               
Cow position:
               
chr1:47233726-47233483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
15-280
               

               
Cow position:
               
chr1:11914128-11913872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
157, 11
               

               
Conread position:
               
16-126
               

               
Cow position:
               
chr1:39427231-39427121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
16-164
               

               
Cow position:
               
chr1:94378782-94378926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
16-190
               

               
Cow position:
               
chr1:95071736-95071904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
16-192
               

               
Cow position:
               
chr1:42138615-42138789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
16-235
               

               
Cow position:
               
chr1:24655710-24655929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
16-235
               

               
Cow position:
               
chr1:98708192-98708408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
16-254
               

               
Cow position:
               
chr1:71045505-71045739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
144, 10
               

               
Conread position:
               
16-256
               

               
Cow position:
               
chr1:81563483-81563725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
17-207
               

               
Cow position:
               
chr1:74013516-74013322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
17-217
               

               
Cow position:
               
chr1:44136711-44136519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
17-217
               

               
Cow position:
               
chr1:53520657-53520859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
17-217
               

               
Cow position:
               
chr1:55135587-55135779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
17-217
               

               
Cow position:
               
chr1:84239358-84239166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 102
               

               
Conread position:
               
18-214
               

               
Cow position:
               
chr1:70538355-70538551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
18-217
               

               
Cow position:
               
chr1:29671772-29671575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
18-217
               

               
Cow position:
               
chr1:78857570-78857375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
151, 10
               

               
Conread position:
               
18-217
               

               
Cow position:
               
chr1:100705885-100706080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
153, 8
               

               
Conread position:
               
18-238
               

               
Cow position:
               
chr1:68951384-68951598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 6
               

               
Conread position:
               
18-277
               

               
Cow position:
               
chr1:102350006-102349742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
20-217
               

               
Cow position:
               
chr1:58419686-58419884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
20-217
               

               
Cow position:
               
chr1:95056808-95057002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
20-221
               

               
Cow position:
               
chr1:51531527-51531720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 9
               

               
Conread position:
               
20-241
               

               
Cow position:
               
chr1:57396176-57395957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
21-254
               

               
Cow position:
               
chr1:44506722-44506955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
22-216
               

               
Cow position:
               
chr1:4573275-4573467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 104
               

               
Conread position:
               
22-248
               

               
Cow position:
               
chr1:4293819-4294036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
150, 22
               

               
Conread position:
               
22-256
               

               
Cow position:
               
chr1:20002481-20002247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 102
               

               
Conread position:
               
24-237
               

               
Cow position:
               
chr1:102784718-102784927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 5
               

               
Conread position:
               
24-238
               

               
Cow position:
               
chr1:55229741-55229956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
25-184
               

               
Cow position:
               
chr1:26159674-26159514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
25-190
               

               
Cow position:
               
chr1:25281918-25281756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
19, 94
               

               
Conread position:
               
25-217
               

               
Cow position:
               
chr1:52994782-52994967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
25-226
               

               
Cow position:
               
chr1:93528448-93528657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
25-236
               

               
Cow position:
               
chr1:88618350-88618564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
19, 110
               

               
Conread position:
               
25-241
               

               
Cow position:
               
chr1:3962926-3962722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
25-241
               

               
Cow position:
               
chr1:97611895-97611687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
15, 94
               

               
Conread position:
               
26-217
               

               
Cow position:
               
chr1:30504230-30504418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
146, 110
               

               
Conread position:
               
26-242
               

               
Cow position:
               
chr1:31235175-31234956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 193
               

               
Conread position:
               
26-256
               

               
Cow position:
               
chr1:20287876-20288108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
146, 17
               

               
Conread position:
               
26-259
               

               
Cow position:
               
chr1:51445638-51445874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 93
               

               
Conread position:
               
26-277
               

               
Cow position:
               
chr1:70434751-70435003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
18, 142
               

               
Conread position:
               
27-254
               

               
Cow position:
               
chr1:71079193-71078971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
17, 22
               

               
Conread position:
               
27-277
               

               
Cow position:
               
chr1:56477355-56477596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
180, 78
               

               
Conread position:
               
27-277
               

               
Cow position:
               
chr1:94403976-94404218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
23, 84
               

               
Conread position:
               
28-194
               

               
Cow position:
               
chr1:26729489-26729646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
28-277
               

               
Cow position:
               
chr1:83583179-83582929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
19, 147
               

               
Conread position:
               
29-190
               

               
Cow position:
               
chr1:62996257-62996414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
143, 89
               

               
Conread position:
               
29-198
               

               
Cow position:
               
chr1:65637966-65638137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
29-257
               

               
Cow position:
               
chr1:59192883-59192650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
14, 149
               

               
Conread position:
               
30-256
               

               
Cow position:
               
chr1:100512359-100512588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
132, 88
               

               
Conread position:
               
31-262
               

               
Cow position:
               
chr1:26200986-26201212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
137, 13
               

               
Conread position:
               
32-194
               

               
Cow position:
               
chr1:69678561-69678399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
32-216
               

               
Cow position:
               
chr1:19545334-19545153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
131, 85
               

               
Conread position:
               
32-241
               

               
Cow position:
               
chr1:49839271-49839479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
32-248
               

               
Cow position:
               
chr1:55357521-55357305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
32-268
               

               
Cow position:
               
chr1:10655243-10655484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
132, 211
               

               
Conread position:
               
35-260
               

               
Cow position:
               
chr1:43389280-43389056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
5, 84
               

               
Conread position:
               
36-226
               

               
Cow position:
               
chr1:53540161-53540348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
63, 10
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr1:43358245-43358004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
128, 87
               

               
Conread position:
               
37-241
               

               
Cow position:
               
chr1:64804338-64804131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 108
               

               
Conread position:
               
37-250
               

               
Cow position:
               
chr1:31348670-31348458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
135, 81
               

               
Conread position:
               
37-254
               

               
Cow position:
               
chr1:24729069-24728855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
38-210
               

               
Cow position:
               
chr1:55705482-55705310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
124, 135
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr1:78809655-78809827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
128, 80
               

               
Conread position:
               
38-241
               

               
Cow position:
               
chr1:79278670-79278473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
128, 39
               

               
Conread position:
               
39-214
               

               
Cow position:
               
chr1:7186560-7186739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
39-217
               

               
Cow position:
               
chr1:95050327-95050146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
131, 79
               

               
Conread position:
               
43-254
               

               
Cow position:
               
chr1:87072481-87072683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
174, 75
               

               
Conread position:
               
44-249
               

               
Cow position:
               
chr1:34771726-34771523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
125, 61
               

               
Conread position:
               
57-217
               

               
Cow position:
               
chr1:75382782-75382941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
57-218
               

               
Cow position:
               
chr1:99792602-99792761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
112, 118
               

               
Conread position:
               
57-241
               

               
Cow position:
               
chr1:74956233-74956047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
114, 55
               

               
Conread position:
               
57-242
               

               
Cow position:
               
chr1:6305078-6304888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
59-217
               

               
Cow position:
               
chr1:43340830-43340665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
59-235
               

               
Cow position:
               
chr1:98310854-98311036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
62-255
               

               
Cow position:
               
chr1:43872539-43872344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
113, 98
               

               
Conread position:
               
64-241
               

               
Cow position:
               
chr1:28563771-28563599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
96, 54
               

               
Conread position:
               
66-238
               

               
Cow position:
               
chr1:95654916-95654743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 107
               

               
Conread position:
               
66-255
               

               
Cow position:
               
chr1:15333677-15333872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
94, 79
               

               
Conread position:
               
67-254
               

               
Cow position:
               
chr1:81470929-81471118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
150, 179
               

               
Conread position:
               
67-255
               

               
Cow position:
               
chr1:24542781-24542596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
106, 45
               

               
Conread position:
               
68-249
               

               
Cow position:
               
chr1:51654212-51654393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
104, 42
               

               
Conread position:
               
72-254
               

               
Cow position:
               
chr1:82443651-82443470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
100, 46
               

               
Conread position:
               
78-238
               

               
Cow position:
               
chr1:33207063-33206905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
97, 80
               

               
Conread position:
               
82-226
               

               
Cow position:
               
chr1:68763866-68763725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
136, 36
               
Show alignments to all cow chromosomes.