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Cow genome map

           
Conread name:
           
Ss1.1-rfhi4001b_p15.5
        

               
Conread position:
               
1-99
               

               
Cow position:
               
chr18:12585444-12585347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-105
               

               
Cow position:
               
chr18:23658863-23658758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr18:52899763-52899877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr18:29958450-29958336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr18:21751999-21752117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr18:56191508-56191385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr18:19640494-19640651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr18:15172729-15172885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr18:51595344-51595184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr18:49660344-49660188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr18:5742740-5742581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr18:2849565-2849401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr18:46135016-46135176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr18:7076459-7076634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr18:11671506-11671683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
168, 25
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr18:24834899-24834719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr18:35535589-35535412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
173, 27
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr18:48513640-48513448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr18:22790377-22790188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr18:43431041-43431235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr18:46727289-46727485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr18:46880987-46880790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr18:51179049-51178859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
171, 25
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr18:15025373-15025566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr18:9007845-9008037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr18:50637767-50637564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr18:26938681-26938884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
167, 7
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr18:21721584-21721377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr18:47183589-47183383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 136
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr18:48407485-48407691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr18:4540176-4539978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
167, 27
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr18:4884819-4884612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr18:9365608-9365817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr18:10656142-10656344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
167, 25
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr18:13293206-13293411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr18:38075457-38075248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr18:56361906-56361702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr18:9974629-9974422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
109, 25
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr18:29387923-29388121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr18:15881161-15880953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr18:18562842-18562630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr18:26535820-26535606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
104, 27
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:238648-238435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:3098616-3098410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
161, 27
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:9818533-9818746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
158, 27
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:11183638-11183853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
168, 30
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:12118149-12117934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:13508033-13507831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
171, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:14048408-14048615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
6, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:22121184-22120973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:24956992-24957209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:37002326-37002541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:45570717-45570920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:49100676-49100462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:49161760-49161535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:55505097-55505315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr18:55552661-55552880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr18:3180115-3180329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr18:7359430-7359654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr18:7950809-7951028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr18:14127272-14127048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr18:16172575-16172347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr18:26306312-26306539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr18:27429139-27429369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr18:28968246-28968018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr18:36512671-36512900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr18:4625596-4625816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
163, 25
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr18:24342321-24342537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr18:32860344-32860564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
165, 25
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr18:39709586-39709809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr18:41270783-41271008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr18:43823257-43823030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr18:21195643-21195416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr18:40758912-40759135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
216, 25
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr18:14586780-14586533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr18:20998918-20998689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr18:9029314-9029546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr18:19619643-19619882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr18:51485631-51485869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr18:8105247-8105013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr18:18958095-18957864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr18:22591429-22591188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr18:26447706-26447947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr18:30677357-30677598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr18:33272641-33272865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr18:33907515-33907274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr18:4182494-4182255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
216, 25
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr18:19159268-19159037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
165, 27
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr18:35012610-35012382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr18:13172829-13172579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr18:55001043-55000802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr18:9089401-9089641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
171, 27
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr18:28101322-28101575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr18:2270807-2270562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
183, 27
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr18:17004946-17005200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr18:7486948-7487195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr18:5486947-5487193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr18:17349697-17349952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr18:27990797-27991051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:9010428-9010669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
218, 25
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:16418000-16417757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:31672807-31672565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:35636654-35636401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
37, 25
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:42966534-42966811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:43539160-43539416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr18:16842369-16842113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
162, 27
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr18:52635385-52635128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
159, 27
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr18:56172324-56172072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr18:32285088-32285341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
159, 27
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr18:32301233-32301486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
159, 27
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr18:35076083-35076337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
216, 27
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr18:25924419-25924683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr18:11618178-11618429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr18:23661006-23661268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr18:27554858-27554596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr18:31202072-31202334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr18:29648482-29648749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
163, 25
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr18:43075958-43076231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr18:10575808-10576070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
168, 27
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr18:44262315-44262596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 31
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr18:45104750-45104476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
93, 25
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr18:56150960-56150678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr18:56181759-56181496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr18:13270945-13271240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chr18:51679176-51679043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr18:22065664-22065496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chr18:27530061-27530247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
37, 94
               

               
Conread position:
               
2-193
               

               
Cow position:
               
chr18:32218559-32218368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
40, 21
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chr18:81453-81656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chr18:55782729-55782518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
2-215
               

               
Cow position:
               
chr18:21528102-21528312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
124, 24
               

               
Conread position:
               
2-216
               

               
Cow position:
               
chr18:51713012-51712794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
2-217
               

               
Cow position:
               
chr18:11867048-11867248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
166, 24
               

               
Conread position:
               
2-217
               

               
Cow position:
               
chr18:13632254-13632045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
38, 26
               

               
Conread position:
               
2-217
               

               
Cow position:
               
chr18:36458631-36458841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr18:11233128-11233353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
2-235
               

               
Cow position:
               
chr18:7965961-7966181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
36, 17
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr18:6275513-6275754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr18:19977281-19977038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
211, 24
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr18:43563925-43564171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr18:51756795-51757038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
157, 24
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr18:36445129-36445383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr18:40196155-40196416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr18:55768477-55768214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr18:12776076-12775816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr18:43065206-43065501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
3-119
               

               
Cow position:
               
chr18:27078546-27078662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 24
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chr18:35472239-35472082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr18:44484060-44483895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 25
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chr18:51691770-51691556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr18:4624731-4624511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
3-230
               

               
Cow position:
               
chr18:6290482-6290710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr18:11831836-11832058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr18:16045302-16045067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
3-277
               

               
Cow position:
               
chr18:37023858-37023585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
165, 23
               

               
Conread position:
               
4-163
               

               
Cow position:
               
chr18:19123874-19124033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr18:35295261-35295447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
4-194
               

               
Cow position:
               
chr18:5991197-5991387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
156, 22
               

               
Conread position:
               
4-194
               

               
Cow position:
               
chr18:11811676-11811861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
4-194
               

               
Cow position:
               
chr18:21266207-21266402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr18:34621665-34621465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr18:29058796-29058592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
169, 22
               

               
Conread position:
               
4-217
               

               
Cow position:
               
chr18:4666512-4666304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chr18:16227260-16227482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chr18:20174429-20174209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
4-236
               

               
Cow position:
               
chr18:3115159-3115393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
156, 22
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chr18:7649693-7649930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
4-238
               

               
Cow position:
               
chr18:39875561-39875327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr18:14815636-14815377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr18:26998563-26998854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
5-108
               

               
Cow position:
               
chr18:36769225-36769123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
5-164
               

               
Cow position:
               
chr18:36265083-36264931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
5-165
               

               
Cow position:
               
chr18:1070113-1069959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
5-165
               

               
Cow position:
               
chr18:11322289-11322452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
5-166
               

               
Cow position:
               
chr18:23708868-23708707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
5-194
               

               
Cow position:
               
chr18:45395701-45395891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr18:25206492-25206290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
5-215
               

               
Cow position:
               
chr18:6309780-6309987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr18:11368063-11367852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr18:47314594-47314381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chr18:35827715-35827480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr18:19143816-19143580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
133, 19
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr18:26937429-26937666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
5-253
               

               
Cow position:
               
chr18:22092481-22092728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
5-254
               

               
Cow position:
               
chr18:7964931-7965177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
6-165
               

               
Cow position:
               
chr18:24977650-24977497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
6-190
               

               
Cow position:
               
chr18:39279297-39279112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
6-194
               

               
Cow position:
               
chr18:3422421-3422605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
6-208
               

               
Cow position:
               
chr18:45904191-45903995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
38, 26
               

               
Conread position:
               
6-216
               

               
Cow position:
               
chr18:47868156-47868367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
6-217
               

               
Cow position:
               
chr18:5646951-5647156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
156, 20
               

               
Conread position:
               
6-217
               

               
Cow position:
               
chr18:29356928-29356719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
166, 20
               

               
Conread position:
               
6-217
               

               
Cow position:
               
chr18:38686794-38686997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
6-217
               

               
Cow position:
               
chr18:51211883-51212088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
57, 18
               

               
Conread position:
               
6-217
               

               
Cow position:
               
chr18:54029568-54029778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
154, 20
               

               
Conread position:
               
6-225
               

               
Cow position:
               
chr18:20271319-20271101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
6-225
               

               
Cow position:
               
chr18:35058042-35058258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
166, 22
               

               
Conread position:
               
6-226
               

               
Cow position:
               
chr18:4649034-4648823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 20
               

               
Conread position:
               
6-226
               

               
Cow position:
               
chr18:11680421-11680644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
6-235
               

               
Cow position:
               
chr18:46048466-46048688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chr18:11191136-11191361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chr18:20127401-20127176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
197, 12
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chr18:30673939-30673709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr18:33606337-33606566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
159, 20
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr18:51298182-51298414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
6-249
               

               
Cow position:
               
chr18:4316008-4316253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
6-259
               

               
Cow position:
               
chr18:3158900-3158649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
162, 20
               

               
Conread position:
               
6-282
               

               
Cow position:
               
chr18:25647548-25647270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
167, 20
               

               
Conread position:
               
7-238
               

               
Cow position:
               
chr18:52637827-52637588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
8-168
               

               
Cow position:
               
chr18:48818546-48818387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
8-173
               

               
Cow position:
               
chr18:10904549-10904712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 18
               

               
Conread position:
               
8-210
               

               
Cow position:
               
chr18:5457557-5457365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
8-210
               

               
Cow position:
               
chr18:52632702-52632499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr18:11166682-11166888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr18:28658211-28658001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr18:34527394-34527191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
116, 8
               

               
Conread position:
               
8-224
               

               
Cow position:
               
chr18:11377068-11377282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
136, 20
               

               
Conread position:
               
8-241
               

               
Cow position:
               
chr18:13359765-13359999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
8-241
               

               
Cow position:
               
chr18:22214189-22214416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
8-257
               

               
Cow position:
               
chr18:19273398-19273151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
127, 20
               

               
Conread position:
               
8-277
               

               
Cow position:
               
chr18:4515730-4515995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
9-163
               

               
Cow position:
               
chr18:50993566-50993412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr18:10954178-10954380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
9-217
               

               
Cow position:
               
chr18:9557685-9557891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
136, 17
               

               
Conread position:
               
9-235
               

               
Cow position:
               
chr18:20864687-20864919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
9-235
               

               
Cow position:
               
chr18:42455316-42455098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
9-238
               

               
Cow position:
               
chr18:18919249-18919025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
9-238
               

               
Cow position:
               
chr18:19850042-19849824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
163, 17
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr18:49543182-49543409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr18:56159169-56159403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
9-254
               

               
Cow position:
               
chr18:1144489-1144238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
109, 17
               

               
Conread position:
               
9-254
               

               
Cow position:
               
chr18:48290734-48290494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
9-256
               

               
Cow position:
               
chr18:601466-601235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
210, 20
               

               
Conread position:
               
10-217
               

               
Cow position:
               
chr18:39115439-39115231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
10-218
               

               
Cow position:
               
chr18:4707583-4707374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
10-238
               

               
Cow position:
               
chr18:33299603-33299833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chr18:6610153-6609923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
10-252
               

               
Cow position:
               
chr18:55789287-55789046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
11-164
               

               
Cow position:
               
chr18:52596096-52596245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
11-213
               

               
Cow position:
               
chr18:11694986-11695183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
11-217
               

               
Cow position:
               
chr18:50082540-50082344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
11-238
               

               
Cow position:
               
chr18:32873289-32873524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
11-246
               

               
Cow position:
               
chr18:49655421-49655640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr18:43284046-43283816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
161, 15
               

               
Conread position:
               
12-217
               

               
Cow position:
               
chr18:47931153-47930957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
12-238
               

               
Cow position:
               
chr18:42747303-42747524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
163, 14
               

               
Conread position:
               
12-241
               

               
Cow position:
               
chr18:50381964-50382190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
13-238
               

               
Cow position:
               
chr18:47517500-47517285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
150, 15
               

               
Conread position:
               
13-241
               

               
Cow position:
               
chr18:268103-267882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
14-208
               

               
Cow position:
               
chr18:46453170-46452976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
14-218
               

               
Cow position:
               
chr18:23447373-23447172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
14-218
               

               
Cow position:
               
chr18:51406194-51405999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
14-253
               

               
Cow position:
               
chr18:31725175-31724931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
131, 12
               

               
Conread position:
               
15-217
               

               
Cow position:
               
chr18:38985397-38985599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
15-238
               

               
Cow position:
               
chr18:31586654-31586436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
15-254
               

               
Cow position:
               
chr18:42479870-42479641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
102, 13
               

               
Conread position:
               
16-194
               

               
Cow position:
               
chr18:56163298-56163472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
16-217
               

               
Cow position:
               
chr18:27388260-27388461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
16-217
               

               
Cow position:
               
chr18:38344515-38344713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
116, 10
               

               
Conread position:
               
16-231
               

               
Cow position:
               
chr18:28924121-28923913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 12
               

               
Conread position:
               
16-277
               

               
Cow position:
               
chr18:33407322-33407582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
122, 12
               

               
Conread position:
               
16-277
               

               
Cow position:
               
chr18:55498777-55499037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
17-217
               

               
Cow position:
               
chr18:25282843-25282645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
17-259
               

               
Cow position:
               
chr18:4369068-4368830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
18-238
               

               
Cow position:
               
chr18:49200353-49200575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
18-256
               

               
Cow position:
               
chr18:36097914-36098152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
65, 8
               

               
Conread position:
               
24-254
               

               
Cow position:
               
chr18:11691692-11691463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
24-254
               

               
Cow position:
               
chr18:29649975-29649741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 177
               

               
Conread position:
               
25-217
               

               
Cow position:
               
chr18:51656334-51656136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
25-241
               

               
Cow position:
               
chr18:2569519-2569726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
14, 115
               

               
Conread position:
               
27-208
               

               
Cow position:
               
chr18:18976805-18976988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
12, 173
               

               
Conread position:
               
27-224
               

               
Cow position:
               
chr18:56183659-56183857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
146, 133
               

               
Conread position:
               
29-208
               

               
Cow position:
               
chr18:30794157-30794333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 90
               

               
Conread position:
               
30-256
               

               
Cow position:
               
chr18:2592449-2592220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 218
               

               
Conread position:
               
31-218
               

               
Cow position:
               
chr18:5711943-5711758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 89
               

               
Conread position:
               
35-226
               

               
Cow position:
               
chr18:48453422-48453608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 91
               

               
Conread position:
               
37-217
               

               
Cow position:
               
chr18:21768359-21768539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
136, 101
               

               
Conread position:
               
37-255
               

               
Cow position:
               
chr18:37382366-37382144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
38-165
               

               
Cow position:
               
chr18:3044165-3044290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
38-168
               

               
Cow position:
               
chr18:53539076-53538946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr18:52402784-52402627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
38-218
               

               
Cow position:
               
chr18:49665419-49665249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
38-238
               

               
Cow position:
               
chr18:19761431-19761627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
134, 95
               

               
Conread position:
               
38-238
               

               
Cow position:
               
chr18:29796692-29796493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
43-241
               

               
Cow position:
               
chr18:35582364-35582166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
129, 93
               

               
Conread position:
               
57-241
               

               
Cow position:
               
chr18:32883053-32883241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 104
               

               
Conread position:
               
71-259
               

               
Cow position:
               
chr18:48829021-48828827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
73-259
               

               
Cow position:
               
chr18:219100-219287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 45
               

               
Conread position:
               
84-255
               

               
Cow position:
               
chr18:3211647-3211819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 31
               
Show alignments to all cow chromosomes.