Cow genome map


           Conread name:
           Ss1.1-rfhi4018b_j21.5
        

               Conread position:
               1-220
               

               Cow position:
               chr6:44910299-44910523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               6-210
               

               Cow position:
               chr6:54339310-54339515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               162
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               6-218
               

               Cow position:
               chr6:50312039-50312247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               166
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               94, 32
               

               Conread position:
               6-244
               

               Cow position:
               chr6:43189560-43189331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               16, 35
               

               Conread position:
               6-258
               

               Cow position:
               chr6:58697862-58697614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               98, 14
               

               Conread position:
               6-431
               

               Cow position:
               chr6:50786717-50787126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 18
               

               Conread position:
               13-277
               

               Cow position:
               chr6:42716350-42716583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               13, 37
               

               Conread position:
               277-431
               

               Cow position:
               chr6:42716562-42716716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               123, 8
               

               Conread position:
               277-432
               

               Cow position:
               chr6:50312272-50312429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               41, 8
               

               Conread position:
               284-432
               

               Cow position:
               chr6:15638782-15638632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               286-429
               

               Cow position:
               chr6:14926143-14925999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               13, 19
               

               Conread position:
               286-432
               

               Cow position:
               chr6:58697366-58697217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               32, 0
               
Show alignments to all cow chromosomes.