Cow genome map
| Conread name: | Ss1.1-rfhi4019b_h13.5 |
| Conread position: | 1-236 |
| Cow position: | chr14:3155599-3155834 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-264 |
| Cow position: | chr14:3127748-3127485 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-264 |
| Cow position: | chr14:3128084-3127821 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-264 |
| Cow position: | chr14:25783450-25783713 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 1-264 |
| Cow position: | chr14:25784206-25784469 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-264 |
| Cow position: | chr14:25836825-25837088 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 200, 208 |
| Conread position: | 1-264 |
| Cow position: | chr14:25860382-25860645 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 201, 210 |
| Conread position: | 1-264 |
| Cow position: | chr14:25877433-25877696 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 201, 210 |
| Conread position: | 2-228 |
| Cow position: | chr14:3156257-3156483 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 2-234 |
| Cow position: | chr14:25877182-25877414 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 2-240 |
| Cow position: | chr14:25860131-25860369 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 2-241 |
| Cow position: | chr14:434085-434324 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-242 |
| Cow position: | chr14:3079899-3079659 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 131, 139 |
| Conread position: | 2-258 |
| Cow position: | chr14:3061718-3061462 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-261 |
| Cow position: | chr14:447864-448123 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-263 |
| Cow position: | chr14:3080823-3080562 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr14:447696-447958 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 226, 233 |
| Conread position: | 2-264 |
| Cow position: | chr14:680498-680760 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 130, 139 |
| Conread position: | 2-264 |
| Cow position: | chr14:680582-680844 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 2-264 |
| Cow position: | chr14:680666-680928 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr14:680750-681012 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 126, 114 |
| Conread position: | 2-264 |
| Cow position: | chr14:680834-681096 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 131, 139 |
| Conread position: | 2-264 |
| Cow position: | chr14:680918-681180 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 48, 55 |
| Conread position: | 2-264 |
| Cow position: | chr14:681002-681264 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 55 |
| Conread position: | 2-264 |
| Cow position: | chr14:3080067-3079805 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 131, 139 |
| Conread position: | 2-264 |
| Cow position: | chr14:3080151-3079889 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr14:3080403-3080141 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr14:3080487-3080225 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr14:3080571-3080309 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 112, 103 |
| Conread position: | 2-264 |
| Cow position: | chr14:3080739-3080477 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 2-264 |
| Cow position: | chr14:3127579-3127317 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 118 |
| Conread position: | 2-264 |
| Cow position: | chr14:3127831-3127569 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr14:3155516-3155778 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 192, 196 |
| Conread position: | 2-264 |
| Cow position: | chr14:3155921-3156183 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 2-264 |
| Cow position: | chr14:3156089-3156351 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr14:3156173-3156435 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 108, 91 |
| Conread position: | 2-264 |
| Cow position: | chr14:25836070-25836332 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr14:25836322-25836584 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr14:25836574-25836836 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr14:25836910-25837172 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr14:25859711-25859973 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 2-264 |
| Cow position: | chr14:25860299-25860561 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr14:25876594-25876856 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 2-264 |
| Cow position: | chr14:25876762-25877024 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 2-264 |
| Cow position: | chr14:25877350-25877612 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-264 |
| Cow position: | chr14:25836492-25836752 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-264 |
| Cow position: | chr14:25836660-25836920 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-264 |
| Cow position: | chr14:25860049-25860309 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 129, 137 |
| Conread position: | 4-264 |
| Cow position: | chr14:25876680-25876940 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 187, 192 |
| Conread position: | 5-264 |
| Cow position: | chr14:3079980-3079721 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 5-264 |
| Cow position: | chr14:3080316-3080057 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-264 |
| Cow position: | chr14:3080652-3080393 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-264 |
| Cow position: | chr14:25836241-25836500 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-264 |
| Cow position: | chr14:25877101-25877360 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 128, 136 |
| Conread position: | 5-264 |
| Cow position: | chr14:25895392-25895651 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 135, 118 |
| Conread position: | 8-264 |
| Cow position: | chr14:447619-447874 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 105, 8 |
| Conread position: | 8-264 |
| Cow position: | chr14:680253-680508 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 16-264 |
| Cow position: | chr14:434015-434263 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-264 |
| Cow position: | chr14:3156038-3156267 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-264 |
| Cow position: | chr14:447570-447790 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 51-264 |
| Cow position: | chr14:25836203-25836416 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-264 |
| Cow position: | chr14:25859257-25859469 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 197, 186 |
| Conread position: | 56-264 |
| Cow position: | chr14:680384-680592 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 77, 85 |
| Conread position: | 61-264 |
| Cow position: | chr14:3080848-3080645 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-264 |
| Cow position: | chr14:3061742-3061540 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.