Cow genome map

Conread name: Ss1.1-rfhi4019b_h13.5

Conread position: 1-236
Cow position: chr19:14960118-14959883 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 1-264
Cow position: chr19:14940011-14940274 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 168
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-264
Cow position: chr19:14940095-14940358 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 181
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 1-264
Cow position: chr19:14940263-14940526 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 166
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-264
Cow position: chr19:20677890-20678153 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 169
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 123, 106

Conread position: 2-231
Cow position: chr19:23650250-23650479 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 150
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 43

Conread position: 2-236
Cow position: chr19:23649662-23649896 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 2-239
Cow position: chr19:14959545-14959308 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 156
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 21, 12

Conread position: 2-258
Cow position: chr19:14940600-14940856 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 2-258
Cow position: chr19:14940768-14941024 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 169
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 2-258
Cow position: chr19:23597473-23597730 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 174
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 235, 0

Conread position: 2-260
Cow position: chr19:14959711-14959455 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 169
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 27

Conread position: 2-261
Cow position: chr19:14960199-14959942 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 181
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 45, 0

Conread position: 2-262
Cow position: chr19:23614044-23614304 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 167
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 188, 192

Conread position: 2-264
Cow position: chr19:14940180-14940442 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr19:14940348-14940610 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr19:14940432-14940694 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr19:14940516-14940778 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr19:14940684-14940946 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 175
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 106, 94

Conread position: 2-264
Cow position: chr19:14948442-14948181 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 177
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 190, 42

Conread position: 2-264
Cow position: chr19:14960033-14959773 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 182
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 220, 0

Conread position: 2-264
Cow position: chr19:14960283-14960023 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 81, 85

Conread position: 2-264
Cow position: chr19:20635441-20635179 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 178
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 49, 13

Conread position: 2-264
Cow position: chr19:20677639-20677901 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 171
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 109, 94

Conread position: 2-264
Cow position: chr19:20677723-20677985 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 166
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr19:20677807-20678069 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 171
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr19:20678227-20678489 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 109, 103

Conread position: 2-264
Cow position: chr19:20678311-20678573 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 174
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 28, 12

Conread position: 2-264
Cow position: chr19:23597137-23597399 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr19:23597221-23597483 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr19:23597305-23597567 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 172
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr19:23597389-23597651 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 171
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr19:23613540-23613802 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 174
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 13

Conread position: 2-264
Cow position: chr19:23613876-23614138 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 169
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 43, 12

Conread position: 2-264
Cow position: chr19:23614380-23614642 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 176
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 42, 8

Conread position: 2-264
Cow position: chr19:23649914-23650176 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 177
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 22, 12

Conread position: 3-231
Cow position: chr19:14959055-14958827 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 189, 194

Conread position: 3-264
Cow position: chr19:20678396-20678657 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 167
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 126, 118

Conread position: 4-264
Cow position: chr19:23613374-23613634 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 166
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 119, 124

Conread position: 4-264
Cow position: chr19:23650000-23650260 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 170
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 119, 124

Conread position: 4-264
Cow position: chr19:23650168-23650428 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 173
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 10

Conread position: 5-249
Cow position: chr19:23650085-23650329 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 167
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 18, 9

Conread position: 5-250
Cow position: chr19:14959626-14959381 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 104, 94

Conread position: 5-264
Cow position: chr19:14960448-14960189 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 167
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 5-264
Cow position: chr19:20635522-20635263 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 169
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 189, 193

Conread position: 5-264
Cow position: chr19:23613627-23613886 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 173
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 40

Conread position: 5-264
Cow position: chr19:23614467-23614726 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 164
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 17, 25

Conread position: 5-264
Cow position: chr19:23649329-23649588 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 162
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 7-264
Cow position: chr19:23649836-23650092 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 174
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 109, 10

Conread position: 8-264
Cow position: chr19:23649501-23649756 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 175
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 8, 0

Conread position: 10-264
Cow position: chr19:23597060-23597315 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 15, 132

Conread position: 23-264
Cow position: chr19:14959119-14958878 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 155
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 26-264
Cow position: chr19:14959194-14958962 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 74, 0

Conread position: 33-264
Cow position: chr19:43570252-43570022 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 149
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 43-262
Cow position: chr19:14916028-14916245 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 146
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 113, 82

Conread position: 43-264
Cow position: chr19:20635568-20635347 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 50-264
Cow position: chr19:20635645-20635431 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 141
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 62-264
Cow position: chr19:23649302-23649504 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 135
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.