Cow genome map
| Conread name: | Ss1.1-rfhi4019b_h13.5 |
| Conread position: | 1-261 |
| Cow position: | chr2:48689353-48689093 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 173, 168 |
| Conread position: | 1-262 |
| Cow position: | chr2:5874825-5874564 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-261 |
| Cow position: | chr2:5874656-5874397 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-262 |
| Cow position: | chr2:5874740-5874480 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 112, 117 |
| Conread position: | 2-262 |
| Cow position: | chr2:82799632-82799892 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-263 |
| Cow position: | chr2:5875160-5874899 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr2:78754450-78754711 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 2-264 |
| Cow position: | chr2:78754854-78755116 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 2-264 |
| Cow position: | chr2:78754938-78755200 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 2-264 |
| Cow position: | chr2:78755106-78755367 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 28 |
| Conread position: | 2-264 |
| Cow position: | chr2:82799548-82799810 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 109, 99 |
| Conread position: | 2-264 |
| Cow position: | chr2:82799716-82799978 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 122, 126 |
| Conread position: | 2-264 |
| Cow position: | chr2:82799884-82800146 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr2:82800052-82800314 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr2:86465372-86465634 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 2-264 |
| Cow position: | chr2:86465456-86465718 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 3-264 |
| Cow position: | chr2:78755275-78755534 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 105, 62 |
| Conread position: | 5-264 |
| Cow position: | chr2:48689432-48689174 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 5-264 |
| Cow position: | chr2:78755025-78755284 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 97, 88 |
| Conread position: | 5-264 |
| Cow position: | chr2:82799467-82799726 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-264 |
| Cow position: | chr2:82800139-82800398 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 169, 162 |
| Conread position: | 14-228 |
| Cow position: | chr2:82800232-82800446 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-264 |
| Cow position: | chr2:86465314-86465550 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 80, 68 |
| Conread position: | 41-264 |
| Cow position: | chr2:86465915-86466138 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 43-263 |
| Cow position: | chr2:48689478-48689259 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 43-264 |
| Cow position: | chr2:78754811-78755032 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 66-262 |
| Cow position: | chr2:5875180-5874984 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.