Cow genome map
| Conread name: | Ss1.1-rfhi4019b_h13.5 |
| Conread position: | 1-227 |
| Cow position: | chr22:12398983-12398757 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 122, 127 |
| Conread position: | 1-264 |
| Cow position: | chr22:11640711-11640974 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 1-264 |
| Cow position: | chr22:11701122-11701385 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-264 |
| Cow position: | chr22:12418838-12418575 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 1-264 |
| Cow position: | chr22:12431467-12431204 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 1-264 |
| Cow position: | chr22:12475612-12475349 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-236 |
| Cow position: | chr22:12457998-12457764 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 2-236 |
| Cow position: | chr22:12475527-12475293 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 107, 97 |
| Conread position: | 2-237 |
| Cow position: | chr22:12418669-12418434 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 2-241 |
| Cow position: | chr22:11641216-11641455 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 2-260 |
| Cow position: | chr22:12385308-12385050 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-261 |
| Cow position: | chr22:12418753-12418494 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-261 |
| Cow position: | chr22:12498976-12499235 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr22:11640796-11641058 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 2-264 |
| Cow position: | chr22:11640964-11641226 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr22:11641048-11641310 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr22:11701375-11701637 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 2-264 |
| Cow position: | chr22:12385224-12384962 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr22:12385478-12385214 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 2-264 |
| Cow position: | chr22:12399066-12398804 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 2-264 |
| Cow position: | chr22:12399318-12399056 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr22:12399654-12399392 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 83, 88 |
| Conread position: | 2-264 |
| Cow position: | chr22:12399822-12399560 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 122, 127 |
| Conread position: | 2-264 |
| Cow position: | chr22:12399900-12399644 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 2-264 |
| Cow position: | chr22:12418921-12418659 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr22:12419005-12418743 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr22:12431130-12430868 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 185, 175 |
| Conread position: | 2-264 |
| Cow position: | chr22:12431298-12431036 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 11 |
| Conread position: | 2-264 |
| Cow position: | chr22:12431718-12431456 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 2-264 |
| Cow position: | chr22:12432222-12431960 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr22:12432306-12432044 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 2-264 |
| Cow position: | chr22:12432390-12432128 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 187, 195 |
| Conread position: | 2-264 |
| Cow position: | chr22:12458334-12458072 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 127 |
| Conread position: | 2-264 |
| Cow position: | chr22:12458418-12458156 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 2-264 |
| Cow position: | chr22:12458502-12458240 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr22:12458586-12458324 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr22:12475695-12475433 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr22:12475863-12475601 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 122, 127 |
| Conread position: | 2-264 |
| Cow position: | chr22:12476115-12475853 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 12 |
| Conread position: | 2-264 |
| Cow position: | chr22:12476199-12475937 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 100, 91 |
| Conread position: | 2-264 |
| Cow position: | chr22:12499060-12499322 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 100, 90 |
| Conread position: | 2-264 |
| Cow position: | chr22:12499144-12499406 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 2-264 |
| Cow position: | chr22:12499564-12499826 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr22:12499648-12499910 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-219 |
| Cow position: | chr22:12385139-12384923 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 3-236 |
| Cow position: | chr22:12499733-12499966 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-264 |
| Cow position: | chr22:12431801-12431540 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 39 |
| Conread position: | 3-264 |
| Cow position: | chr22:12499481-12499742 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 14 |
| Conread position: | 4-262 |
| Cow position: | chr22:14429754-14430012 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-261 |
| Cow position: | chr22:12399735-12399479 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 5-264 |
| Cow position: | chr22:46654122-46654381 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 5-264 |
| Cow position: | chr22:46654290-46654549 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 17-264 |
| Cow position: | chr22:12432459-12432212 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-264 |
| Cow position: | chr22:12399460-12399224 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 80, 87 |
| Conread position: | 50-264 |
| Cow position: | chr22:12399354-12399140 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 143, 128 |
| Conread position: | 50-264 |
| Cow position: | chr22:12458622-12458408 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 74 |
| Conread position: | 55-264 |
| Cow position: | chr22:12458029-12457820 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 136, 150 |
| Conread position: | 74-264 |
| Cow position: | chr22:12419017-12418827 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.