Cow genome map
| Conread name: | Ss1.1-rfhi4019b_h13.5 |
| Conread position: | 1-226 |
| Cow position: | chr23:25723938-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 114, 118 |
| Conread position: | 1-234 |
| Cow position: | chr23:24626497-24626730 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 1-249 |
| Cow position: | chr23:24535772-24535524 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-259 |
| Cow position: | chr23:25626135-25626393 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 127 |
| Conread position: | 1-261 |
| Cow position: | chr23:24522463-24522203 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 1-264 |
| Cow position: | chr23:25660424-25660687 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-226 |
| Cow position: | chr23:24546888-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 93, 81 |
| Conread position: | 2-230 |
| Cow position: | chr23:24654139-24654367 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 2-234 |
| Cow position: | chr23:24560364-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-249 |
| Cow position: | chr23:24547056-24546809 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 16, 12 |
| Conread position: | 2-257 |
| Cow position: | chr23:24639826-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 2-261 |
| Cow position: | chr23:24626414-24626673 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-263 |
| Cow position: | chr23:24654055-24654316 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr23:24522546-24522284 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 2-264 |
| Cow position: | chr23:24535855-24535593 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr23:24546972-24546710 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 183, 175 |
| Conread position: | 2-264 |
| Cow position: | chr23:24547140-24546878 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 2-264 |
| Cow position: | chr23:24547308-24547046 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 127, 115 |
| Conread position: | 2-264 |
| Cow position: | chr23:24560448-24560186 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 2-264 |
| Cow position: | chr23:24560532-24560270 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 2-264 |
| Cow position: | chr23:24560700-24560438 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr23:24560868-24560606 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 131, 139 |
| Conread position: | 2-264 |
| Cow position: | chr23:24626330-24626592 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 2-264 |
| Cow position: | chr23:24639238-24639500 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 122, 127 |
| Conread position: | 2-264 |
| Cow position: | chr23:24639406-24639668 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 2-264 |
| Cow position: | chr23:24639490-24639752 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 2-264 |
| Cow position: | chr23:24639574-24639836 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 2-264 |
| Cow position: | chr23:24639658-24639920 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 2-264 |
| Cow position: | chr23:24639742-24640004 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 100, 91 |
| Conread position: | 2-264 |
| Cow position: | chr23:25626220-25626482 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 120, 127 |
| Conread position: | 2-264 |
| Cow position: | chr23:25626556-25626815 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 2-264 |
| Cow position: | chr23:25660173-25660435 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 131, 139 |
| Conread position: | 2-264 |
| Cow position: | chr23:25698550-25698288 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 201, 193 |
| Conread position: | 2-264 |
| Cow position: | chr23:25698634-25698372 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 175, 192 |
| Conread position: | 2-264 |
| Cow position: | chr23:25724105-25723843 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 4-264 |
| Cow position: | chr23:24639324-24639584 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 68 |
| Conread position: | 4-264 |
| Cow position: | chr23:25626639-25626899 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-236 |
| Cow position: | chr23:25626724-25626956 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 5-263 |
| Cow position: | chr23:24560613-24560355 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 5-264 |
| Cow position: | chr23:24547221-24546962 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 5-264 |
| Cow position: | chr23:25626055-25626314 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 35-258 |
| Cow position: | chr23:25660374-25660597 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-263 |
| Cow position: | chr23:24626303-24626507 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 59-264 |
| Cow position: | chr23:25660146-25660351 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-264 |
| Cow position: | chr23:24547329-24547130 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-264 |
| Cow position: | chr23:24560889-24560690 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 163, 172 |
| Conread position: | 74-264 |
| Cow position: | chr23:24654043-24654233 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 80-264 |
| Cow position: | chr23:24560706-24560522 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 142-264 |
| Cow position: | chr23:24626302-24626424 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.