Cow genome map

Conread name: Ss1.1-rfhi4019b_h13.5

Conread position: 1-221
Cow position: chr25:34769432-34769213 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 9, 16

Conread position: 1-261
Cow position: chr25:22236017-22236277 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 174
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 173, 166

Conread position: 1-264
Cow position: chr25:33305382-33305120 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 165
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 1-264
Cow position: chr25:34769768-34769505 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 181
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 20, 13

Conread position: 2-234
Cow position: chr25:427350-427582 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 156
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 127, 114

Conread position: 2-236
Cow position: chr25:34763183-34763417 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 156
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 2-238
Cow position: chr25:326686-326923 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 152
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 225, 0

Conread position: 2-238
Cow position: chr25:33145203-33145439 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 155
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 2-243
Cow position: chr25:4657276-4657034 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 155
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 235, 0

Conread position: 2-244
Cow position: chr25:34769515-34769273 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 2-248
Cow position: chr25:33127991-33128237 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 38, 43

Conread position: 2-251
Cow position: chr25:25652797-25653048 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 165
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 62, 58

Conread position: 2-258
Cow position: chr25:25652293-25652549 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 2-260
Cow position: chr25:33157032-33156775 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 174
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 37, 43

Conread position: 2-260
Cow position: chr25:34769599-34769341 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 23, 13

Conread position: 2-261
Cow position: chr25:33157200-33156941 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 108, 103

Conread position: 2-261
Cow position: chr25:34447547-34447799 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 169
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 159, 0

Conread position: 2-264
Cow position: chr25:326518-326780 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:414675-414413 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 111, 117

Conread position: 2-264
Cow position: chr25:4657444-4657182 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 163
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:22235934-22236196 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 174
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:23420320-23420582 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 176
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 54, 30

Conread position: 2-264
Cow position: chr25:23420404-23420666 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 171
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 121, 126

Conread position: 2-264
Cow position: chr25:25652713-25652975 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 170
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:25652965-25653227 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 169
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:33127739-33128001 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:33127823-33128085 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 172
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:33127907-33128169 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 171
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:33144870-33145129 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 171
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 168, 0

Conread position: 2-264
Cow position: chr25:33157116-33156854 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 187
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 25, 12

Conread position: 2-264
Cow position: chr25:33157284-33157022 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 182
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 122, 127

Conread position: 2-264
Cow position: chr25:33157368-33157106 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 109, 104

Conread position: 2-264
Cow position: chr25:33157452-33157190 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 181
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:33298500-33298762 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 175
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 16, 8

Conread position: 2-264
Cow position: chr25:33298752-33299014 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 175
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 127, 122

Conread position: 2-264
Cow position: chr25:33298920-33299182 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 44, 38

Conread position: 2-264
Cow position: chr25:33299004-33299266 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:33299088-33299350 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 174
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:33299256-33299518 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 171
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:33299508-33299770 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 164
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:33299592-33299850 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 173
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 221, 0

Conread position: 2-264
Cow position: chr25:34447127-34447389 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 166
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:34447211-34447473 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 169
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:34447379-34447641 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 168
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 12

Conread position: 2-264
Cow position: chr25:34732587-34732325 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 172
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 122, 139

Conread position: 2-264
Cow position: chr25:34733988-34733726 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 165
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:34769851-34769589 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 184
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:34769935-34769673 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 22, 12

Conread position: 2-264
Cow position: chr25:34770019-34769757 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 175
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:34770103-34769841 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 175
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:36800652-36800914 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 169
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 189, 201

Conread position: 2-264
Cow position: chr25:36800820-36801082 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 174
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 32

Conread position: 2-264
Cow position: chr25:36800904-36801166 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 180
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 2-264
Cow position: chr25:36801072-36801334 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 176
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 112, 107

Conread position: 2-264
Cow position: chr25:36801648-36801910 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 168
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 3-235
Cow position: chr25:346554-346786 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 37, 42

Conread position: 3-264
Cow position: chr25:414753-414497 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 180
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 58, 0

Conread position: 3-264
Cow position: chr25:34447296-34447557 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 101, 93

Conread position: 4-264
Cow position: chr25:33298586-33298846 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 173
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 107, 130

Conread position: 4-264
Cow position: chr25:33299426-33299686 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 171
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 4-264
Cow position: chr25:34447045-34447305 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 177
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 34, 41

Conread position: 5-225
Cow position: chr25:366833-367053 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 40

Conread position: 5-225
Cow position: chr25:23420659-23420879 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 147
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 40

Conread position: 5-236
Cow position: chr25:34762853-34763084 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 5-239
Cow position: chr25:327031-327265 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 156
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 172, 189

Conread position: 5-239
Cow position: chr25:346640-346873 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 78, 82

Conread position: 5-261
Cow position: chr25:326947-327203 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 171
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 5-261
Cow position: chr25:4657357-4657101 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 167
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 5-262
Cow position: chr25:326605-326862 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 168
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 5-263
Cow position: chr25:22235853-22236111 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 173
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 5-264
Cow position: chr25:23420575-23420834 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 173
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 118, 123

Conread position: 5-264
Cow position: chr25:25652884-25653143 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 162
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 5-264
Cow position: chr25:33144957-33145213 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 172
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 10

Conread position: 5-264
Cow position: chr25:33298839-33299098 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 183
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 78, 83

Conread position: 11-227
Cow position: chr25:34763525-34763741 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 14-264
Cow position: chr25:33157524-33157274 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 164
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 16-264
Cow position: chr25:36800582-36800830 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 158
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 35-264
Cow position: chr25:33145152-33145381 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 44-260
Cow position: chr25:23420530-23420746 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 157, 167

Conread position: 44-264
Cow position: chr25:36801030-36801250 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 145, 154

Conread position: 45-264
Cow position: chr25:34770146-34769925 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 50-227
Cow position: chr25:36801780-36801957 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 121
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 50-249
Cow position: chr25:34433005-34433204 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 135
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 34, 40

Conread position: 50-261
Cow position: chr25:18642102-18641888 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 141
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 51-264
Cow position: chr25:33298717-33298930 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 55-263
Cow position: chr25:34446928-34447136 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 60-242
Cow position: chr25:24398992-24398809 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 177, 0

Conread position: 62-264
Cow position: chr25:33144846-33145045 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 135
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 189, 0

Conread position: 65-262
Cow position: chr25:34762829-34763026 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 75-262
Cow position: chr25:326507-326694 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 53, 46

Conread position: 89-262
Cow position: chr25:326947-327120 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 119
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.