Cow genome map
| Conread name: | Ss1.1-rfhi4019b_h13.5 |
| Conread position: | 1-236 |
| Cow position: | chr7:3180641-3180875 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 187, 155 |
| Conread position: | 1-260 |
| Cow position: | chr7:3180305-3180564 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-264 |
| Cow position: | chr7:18390434-18390697 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-264 |
| Cow position: | chr7:42878920-42878657 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 191, 197 |
| Conread position: | 2-233 |
| Cow position: | chr7:42878499-42878267 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 2-239 |
| Cow position: | chr7:3180558-3180795 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 2-242 |
| Cow position: | chr7:1015212-1015451 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 235, 0 |
| Conread position: | 2-248 |
| Cow position: | chr7:1014378-1014624 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 2-261 |
| Cow position: | chr7:18390351-18390610 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-263 |
| Cow position: | chr7:3179802-3180063 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 2-264 |
| Cow position: | chr7:1014708-1014970 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 2-264 |
| Cow position: | chr7:1014792-1015054 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 2-264 |
| Cow position: | chr7:1014876-1015138 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 2-264 |
| Cow position: | chr7:3179886-3180148 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 2-264 |
| Cow position: | chr7:3179970-3180232 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr7:3180054-3180316 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 115, 124 |
| Conread position: | 2-264 |
| Cow position: | chr7:3180222-3180484 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-264 |
| Cow position: | chr7:3180390-3180652 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 2-264 |
| Cow position: | chr7:3180474-3180736 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 2-264 |
| Cow position: | chr7:11600746-11600484 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 109, 104 |
| Conread position: | 2-264 |
| Cow position: | chr7:18390267-18390529 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 2-264 |
| Cow position: | chr7:42878835-42878573 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 113, 104 |
| Conread position: | 2-264 |
| Cow position: | chr7:42879003-42878740 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 260, 0 |
| Conread position: | 2-264 |
| Cow position: | chr7:42879087-42878825 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 3-264 |
| Cow position: | chr7:8277954-8278215 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 11 |
| Conread position: | 3-264 |
| Cow position: | chr7:18390520-18390781 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-264 |
| Cow position: | chr7:1439831-1440089 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 4-264 |
| Cow position: | chr7:28846698-28846958 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-264 |
| Cow position: | chr7:42879169-42878909 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-264 |
| Cow position: | chr7:42879253-42878993 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-264 |
| Cow position: | chr7:1015047-1015306 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-264 |
| Cow position: | chr7:3179721-3179980 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 94 |
| Conread position: | 5-264 |
| Cow position: | chr7:11600827-11600568 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 123, 116 |
| Conread position: | 5-264 |
| Cow position: | chr7:18390186-18390445 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 5-264 |
| Cow position: | chr7:28846447-28846706 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 229, 222 |
| Conread position: | 35-263 |
| Cow position: | chr7:1014993-1015221 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-264 |
| Cow position: | chr7:1440028-1440257 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-264 |
| Cow position: | chr7:42878718-42878489 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 41-264 |
| Cow position: | chr7:3180177-3180400 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 86-260 |
| Cow position: | chr7:16643334-16643508 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 105, 112 |
Show alignments to all cow chromosomes.