• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-rfhi4027b_a6.5
        

               
Conread position:
               
57-266
               

               
Cow position:
               
chr3:48537596-48537376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
59, 38
               

               
Conread position:
               
62-397
               

               
Cow position:
               
chr3:66631119-66631466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
65-286
               

               
Cow position:
               
chr3:72027860-72027632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
141, 199
               

               
Conread position:
               
80-420
               

               
Cow position:
               
chr3:17331931-17331587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 93
               

               
Conread position:
               
84-387
               

               
Cow position:
               
chr3:76172479-76172770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
85-284
               

               
Cow position:
               
chr3:80958310-80958515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
120, 20
               

               
Conread position:
               
85-417
               

               
Cow position:
               
chr3:8061324-8060991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
86-284
               

               
Cow position:
               
chr3:70333027-70333225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
20, 111
               

               
Conread position:
               
87-222
               

               
Cow position:
               
chr3:40794520-40794652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 19
               

               
Conread position:
               
87-298
               

               
Cow position:
               
chr3:77276267-77276475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
87-326
               

               
Cow position:
               
chr3:14770683-14770931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
87-401
               

               
Cow position:
               
chr3:18180162-18179825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
87-420
               

               
Cow position:
               
chr3:75853136-75853470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
105, 52
               

               
Conread position:
               
87-441
               

               
Cow position:
               
chr3:76713113-76713480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
88-190
               

               
Cow position:
               
chr3:81419944-81419843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
88-330
               

               
Cow position:
               
chr3:20841679-20841926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
19, 98
               

               
Conread position:
               
88-399
               

               
Cow position:
               
chr3:19711139-19711453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
116, 41
               

               
Conread position:
               
88-417
               

               
Cow position:
               
chr3:71247212-71246890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
88-420
               

               
Cow position:
               
chr3:57764409-57764088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
89-264
               

               
Cow position:
               
chr3:79398345-79398158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
89-265
               

               
Cow position:
               
chr3:16107179-16107352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
89-332
               

               
Cow position:
               
chr3:35075068-35074826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
213, 20
               

               
Conread position:
               
89-423
               

               
Cow position:
               
chr3:35153804-35153479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
24, 94
               

               
Conread position:
               
89-441
               

               
Cow position:
               
chr3:21081187-21081536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
90-286
               

               
Cow position:
               
chr3:54350240-54350447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
90-286
               

               
Cow position:
               
chr3:60371182-60370976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
90-420
               

               
Cow position:
               
chr3:68587217-68586881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
25, 183
               

               
Conread position:
               
90-441
               

               
Cow position:
               
chr3:20674682-20675029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
10, 50
               

               
Conread position:
               
90-441
               

               
Cow position:
               
chr3:29891212-29891567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
90-441
               

               
Cow position:
               
chr3:76922477-76922817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
58, 93
               

               
Conread position:
               
91-188
               

               
Cow position:
               
chr3:2457940-2458039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
91-205
               

               
Cow position:
               
chr3:29386062-29385950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
91-258
               

               
Cow position:
               
chr3:45168756-45168590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
136, 18
               

               
Conread position:
               
91-280
               

               
Cow position:
               
chr3:4071573-4071770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
25, 151
               

               
Conread position:
               
91-284
               

               
Cow position:
               
chr3:15859189-15859383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
91-284
               

               
Cow position:
               
chr3:26337820-26338024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
91-286
               

               
Cow position:
               
chr3:21050475-21050678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
91-295
               

               
Cow position:
               
chr3:76168434-76168646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
113, 204
               

               
Conread position:
               
91-300
               

               
Cow position:
               
chr3:28902569-28902778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
91-325
               

               
Cow position:
               
chr3:20043401-20043640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
116, 40
               

               
Conread position:
               
91-330
               

               
Cow position:
               
chr3:39605816-39606075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
91-396
               

               
Cow position:
               
chr3:3656714-3656398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
19, 56
               

               
Conread position:
               
91-396
               

               
Cow position:
               
chr3:73837521-73837832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 249
               

               
Conread position:
               
91-419
               

               
Cow position:
               
chr3:11253973-11254297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
114, 22
               

               
Conread position:
               
91-419
               

               
Cow position:
               
chr3:59040771-59040429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
5, 246
               

               
Conread position:
               
91-441
               

               
Cow position:
               
chr3:18067329-18066981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
19, 56
               

               
Conread position:
               
91-441
               

               
Cow position:
               
chr3:45183626-45184002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
92, 215
               

               
Conread position:
               
91-441
               

               
Cow position:
               
chr3:55970710-55970351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 256
               

               
Conread position:
               
92-193
               

               
Cow position:
               
chr3:75151191-75151293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
92-259
               

               
Cow position:
               
chr3:18764299-18764122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
92-420
               

               
Cow position:
               
chr3:63269425-63269083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
92-420
               

               
Cow position:
               
chr3:74234376-74234057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
93-205
               

               
Cow position:
               
chr3:72910884-72910994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
93-250
               

               
Cow position:
               
chr3:58497851-58497687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
112, 17
               

               
Conread position:
               
93-261
               

               
Cow position:
               
chr3:42589297-42589117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
93-281
               

               
Cow position:
               
chr3:44594817-44594623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
110, 182
               

               
Conread position:
               
93-283
               

               
Cow position:
               
chr3:635371-635174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
111, 59
               

               
Conread position:
               
93-283
               

               
Cow position:
               
chr3:83934918-83934722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
93-284
               

               
Cow position:
               
chr3:19044577-19044770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
131, 15
               

               
Conread position:
               
93-287
               

               
Cow position:
               
chr3:81616255-81616460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
93-331
               

               
Cow position:
               
chr3:69650705-69650943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
88, 47
               

               
Conread position:
               
93-331
               

               
Cow position:
               
chr3:79272385-79272628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
107, 17
               

               
Conread position:
               
93-348
               

               
Cow position:
               
chr3:45822821-45823094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
93-390
               

               
Cow position:
               
chr3:55094036-55094344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 54
               

               
Conread position:
               
93-401
               

               
Cow position:
               
chr3:83787636-83787316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 215
               

               
Conread position:
               
93-417
               

               
Cow position:
               
chr3:46541660-46541964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
189, 18
               

               
Conread position:
               
93-419
               

               
Cow position:
               
chr3:17058353-17058678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 201
               

               
Conread position:
               
93-419
               

               
Cow position:
               
chr3:54903756-54903437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
93-420
               

               
Cow position:
               
chr3:53738999-53739325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
24, 66
               

               
Conread position:
               
93-428
               

               
Cow position:
               
chr3:70676424-70676077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
112, 131
               

               
Conread position:
               
93-434
               

               
Cow position:
               
chr3:21014763-21015113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
105, 52
               

               
Conread position:
               
93-440
               

               
Cow position:
               
chr3:3032603-3032251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 281
               

               
Conread position:
               
93-441
               

               
Cow position:
               
chr3:27696770-27697133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 161
               

               
Conread position:
               
93-441
               

               
Cow position:
               
chr3:45667151-45667507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
112, 18
               

               
Conread position:
               
93-441
               

               
Cow position:
               
chr3:57577887-57577541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 15
               

               
Conread position:
               
94-286
               

               
Cow position:
               
chr3:423563-423362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
94-286
               

               
Cow position:
               
chr3:42967199-42967384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 94
               

               
Conread position:
               
94-332
               

               
Cow position:
               
chr3:46792578-46792331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 81
               

               
Conread position:
               
94-341
               

               
Cow position:
               
chr3:47316187-47316446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
107, 22
               

               
Conread position:
               
94-415
               

               
Cow position:
               
chr3:51403089-51402778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 107
               

               
Conread position:
               
94-419
               

               
Cow position:
               
chr3:83491274-83490948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
9, 146
               

               
Conread position:
               
94-420
               

               
Cow position:
               
chr3:39171306-39171622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
94-420
               

               
Cow position:
               
chr3:51578133-51578460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
104, 17
               

               
Conread position:
               
94-420
               

               
Cow position:
               
chr3:59649447-59649116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
94-424
               

               
Cow position:
               
chr3:58527565-58527258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
94, 16
               

               
Conread position:
               
94-425
               

               
Cow position:
               
chr3:71496939-71497286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
92, 16
               

               
Conread position:
               
94-428
               

               
Cow position:
               
chr3:18393205-18393534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 109
               

               
Conread position:
               
94-429
               

               
Cow position:
               
chr3:14553062-14552731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
94-441
               

               
Cow position:
               
chr3:14599111-14598796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
144, 15
               

               
Conread position:
               
95-204
               

               
Cow position:
               
chr3:33460406-33460517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
95-253
               

               
Cow position:
               
chr3:11608010-11607849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 149
               

               
Conread position:
               
95-282
               

               
Cow position:
               
chr3:48772037-48772239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
21, 134
               

               
Conread position:
               
95-283
               

               
Cow position:
               
chr3:55248781-55248587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
21, 174
               

               
Conread position:
               
95-295
               

               
Cow position:
               
chr3:15862186-15861990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
95-298
               

               
Cow position:
               
chr3:24304438-24304642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
92, 14
               

               
Conread position:
               
95-300
               

               
Cow position:
               
chr3:40100536-40100736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
95-321
               

               
Cow position:
               
chr3:3163923-3164149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
95-330
               

               
Cow position:
               
chr3:3275787-3275543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 135
               

               
Conread position:
               
95-341
               

               
Cow position:
               
chr3:78443378-78443632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
107, 24
               

               
Conread position:
               
95-376
               

               
Cow position:
               
chr3:75777876-75778157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
95-387
               

               
Cow position:
               
chr3:83988727-83988425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
95-393
               

               
Cow position:
               
chr3:18059898-18059589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
16, 248
               

               
Conread position:
               
95-401
               

               
Cow position:
               
chr3:65237214-65236905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
99, 239
               

               
Conread position:
               
95-408
               

               
Cow position:
               
chr3:64197018-64196699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 242
               

               
Conread position:
               
95-420
               

               
Cow position:
               
chr3:23734897-23735238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
21, 302
               

               
Conread position:
               
95-420
               

               
Cow position:
               
chr3:30180276-30179942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 149
               

               
Conread position:
               
95-420
               

               
Cow position:
               
chr3:71238341-71238017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
95-421
               

               
Cow position:
               
chr3:26066178-26065861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 89
               

               
Conread position:
               
95-428
               

               
Cow position:
               
chr3:13301654-13301995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
95-439
               

               
Cow position:
               
chr3:67519985-67520332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 92
               

               
Conread position:
               
96-193
               

               
Cow position:
               
chr3:49232074-49231977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
96-254
               

               
Cow position:
               
chr3:69849107-69849267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 98
               

               
Conread position:
               
96-262
               

               
Cow position:
               
chr3:34931608-34931783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
18, 139
               

               
Conread position:
               
96-262
               

               
Cow position:
               
chr3:74500448-74500279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 77
               

               
Conread position:
               
96-277
               

               
Cow position:
               
chr3:21694417-21694227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
111, 71
               

               
Conread position:
               
96-277
               

               
Cow position:
               
chr3:22094422-22094596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
22, 84
               

               
Conread position:
               
96-280
               

               
Cow position:
               
chr3:28323399-28323217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
142, 19
               

               
Conread position:
               
96-282
               

               
Cow position:
               
chr3:37851688-37851494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
96-283
               

               
Cow position:
               
chr3:16362325-16362508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
96-283
               

               
Cow position:
               
chr3:58614653-58614453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
92, 13
               

               
Conread position:
               
96-283
               

               
Cow position:
               
chr3:63780303-63780502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
96-283
               

               
Cow position:
               
chr3:76300964-76300767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
96-284
               

               
Cow position:
               
chr3:38331420-38331616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
96-284
               

               
Cow position:
               
chr3:43388935-43389132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
96-284
               

               
Cow position:
               
chr3:51150321-51150124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
20, 37
               

               
Conread position:
               
96-284
               

               
Cow position:
               
chr3:59317894-59317698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 138
               

               
Conread position:
               
96-286
               

               
Cow position:
               
chr3:6049096-6049295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
96-286
               

               
Cow position:
               
chr3:26339250-26339437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 47
               

               
Conread position:
               
96-286
               

               
Cow position:
               
chr3:58558473-58558273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
96-291
               

               
Cow position:
               
chr3:78258559-78258765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
20, 204
               

               
Conread position:
               
96-292
               

               
Cow position:
               
chr3:18699915-18700125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
96-296
               

               
Cow position:
               
chr3:14211793-14211999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
96-296
               

               
Cow position:
               
chr3:58101866-58101660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
20, 145
               

               
Conread position:
               
96-297
               

               
Cow position:
               
chr3:31115088-31115286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
96-298
               

               
Cow position:
               
chr3:70402829-70402627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
13, 154
               

               
Conread position:
               
96-299
               

               
Cow position:
               
chr3:79339385-79339601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 175
               

               
Conread position:
               
96-299
               

               
Cow position:
               
chr3:82195674-82195464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
109, 57
               

               
Conread position:
               
96-300
               

               
Cow position:
               
chr3:23818677-23818471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
79, 97
               

               
Conread position:
               
96-300
               

               
Cow position:
               
chr3:32377005-32376791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
96-305
               

               
Cow position:
               
chr3:13882327-13882545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 163
               

               
Conread position:
               
96-308
               

               
Cow position:
               
chr3:44960138-44959911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
96-310
               

               
Cow position:
               
chr3:26783317-26783538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
81, 152
               

               
Conread position:
               
96-317
               

               
Cow position:
               
chr3:9718059-9718289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
108, 207
               

               
Conread position:
               
96-317
               

               
Cow position:
               
chr3:41863813-41863584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
96-317
               

               
Cow position:
               
chr3:58452238-58452008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
15, 142
               

               
Conread position:
               
96-319
               

               
Cow position:
               
chr3:15973759-15973524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
111, 19
               

               
Conread position:
               
96-322
               

               
Cow position:
               
chr3:35624350-35624589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 182
               

               
Conread position:
               
96-325
               

               
Cow position:
               
chr3:84378286-84378527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
106, 201
               

               
Conread position:
               
96-326
               

               
Cow position:
               
chr3:1011683-1011437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
96-330
               

               
Cow position:
               
chr3:42796328-42796570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
110, 201
               

               
Conread position:
               
96-331
               

               
Cow position:
               
chr3:80973542-80973297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
96-332
               

               
Cow position:
               
chr3:12090868-12090617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 156
               

               
Conread position:
               
96-332
               

               
Cow position:
               
chr3:59299762-59299518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
106, 15
               

               
Conread position:
               
96-337
               

               
Cow position:
               
chr3:76270078-76269828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 119
               

               
Conread position:
               
96-359
               

               
Cow position:
               
chr3:27976332-27976605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
38, 26
               

               
Conread position:
               
96-363
               

               
Cow position:
               
chr3:9074174-9074428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
204, 80
               

               
Conread position:
               
96-371
               

               
Cow position:
               
chr3:51608992-51609277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 209
               

               
Conread position:
               
96-377
               

               
Cow position:
               
chr3:59605031-59604746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
96-377
               

               
Cow position:
               
chr3:81087445-81087731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 181
               

               
Conread position:
               
96-386
               

               
Cow position:
               
chr3:22165222-22165523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 180
               

               
Conread position:
               
96-387
               

               
Cow position:
               
chr3:1830383-1830681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
96-387
               

               
Cow position:
               
chr3:45211496-45211188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
96-390
               

               
Cow position:
               
chr3:23471273-23471576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
96-403
               

               
Cow position:
               
chr3:15388408-15388094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
96-403
               

               
Cow position:
               
chr3:45700992-45700684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
92, 136
               

               
Conread position:
               
96-404
               

               
Cow position:
               
chr3:31225613-31225316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
96-404
               

               
Cow position:
               
chr3:35055786-35056102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
106, 243
               

               
Conread position:
               
96-404
               

               
Cow position:
               
chr3:48468370-48468059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 200
               

               
Conread position:
               
96-417
               

               
Cow position:
               
chr3:53271023-53270693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 237
               

               
Conread position:
               
96-418
               

               
Cow position:
               
chr3:14465527-14465848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
96-419
               

               
Cow position:
               
chr3:3913247-3913586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
96-419
               

               
Cow position:
               
chr3:53875572-53875897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
109, 201
               

               
Conread position:
               
96-419
               

               
Cow position:
               
chr3:63316318-63315998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 142
               

               
Conread position:
               
96-419
               

               
Cow position:
               
chr3:68648366-68648027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
103, 13
               

               
Conread position:
               
96-420
               

               
Cow position:
               
chr3:18687092-18686768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
96-420
               

               
Cow position:
               
chr3:23168877-23169205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
96-420
               

               
Cow position:
               
chr3:42434138-42434472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
112, 66
               

               
Conread position:
               
96-420
               

               
Cow position:
               
chr3:47417379-47417705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 188
               

               
Conread position:
               
96-420
               

               
Cow position:
               
chr3:48253072-48252745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
15, 119
               

               
Conread position:
               
96-420
               

               
Cow position:
               
chr3:77188629-77188299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
110, 19
               

               
Conread position:
               
96-420
               

               
Cow position:
               
chr3:79271516-79271862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
96-421
               

               
Cow position:
               
chr3:15228650-15228959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
20, 61
               

               
Conread position:
               
96-421
               

               
Cow position:
               
chr3:32787655-32787318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
96-424
               

               
Cow position:
               
chr3:60264532-60264859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
96-428
               

               
Cow position:
               
chr3:2025395-2025038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
22, 289
               

               
Conread position:
               
96-428
               

               
Cow position:
               
chr3:23920235-23920576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
20, 245
               

               
Conread position:
               
96-428
               

               
Cow position:
               
chr3:53318601-53318257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
24, 149
               

               
Conread position:
               
96-428
               

               
Cow position:
               
chr3:55318705-55319049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 256
               

               
Conread position:
               
96-432
               

               
Cow position:
               
chr3:34871758-34871418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
108, 152
               

               
Conread position:
               
96-441
               

               
Cow position:
               
chr3:9662978-9663326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 200
               

               
Conread position:
               
96-441
               

               
Cow position:
               
chr3:27274716-27274377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
96-441
               

               
Cow position:
               
chr3:53910294-53909959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
111, 12
               

               
Conread position:
               
96-441
               

               
Cow position:
               
chr3:54946312-54945974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
96-441
               

               
Cow position:
               
chr3:55712624-55712275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
96-441
               

               
Cow position:
               
chr3:75687246-75687593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
96-444
               

               
Cow position:
               
chr3:72474113-72473753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
20, 250
               

               
Conread position:
               
97-204
               

               
Cow position:
               
chr3:42933675-42933565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
97-205
               

               
Cow position:
               
chr3:59926823-59926714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
97-264
               

               
Cow position:
               
chr3:55105958-55106133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
108, 14
               

               
Conread position:
               
97-279
               

               
Cow position:
               
chr3:8522965-8523154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
81, 138
               

               
Conread position:
               
97-282
               

               
Cow position:
               
chr3:51153233-51153047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
104, 53
               

               
Conread position:
               
97-283
               

               
Cow position:
               
chr3:24220389-24220581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
15, 139
               

               
Conread position:
               
97-284
               

               
Cow position:
               
chr3:44720687-44720497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
97-286
               

               
Cow position:
               
chr3:4194216-4194414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
97-286
               

               
Cow position:
               
chr3:28883975-28884167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
97-286
               

               
Cow position:
               
chr3:46146540-46146733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
108, 45
               

               
Conread position:
               
97-296
               

               
Cow position:
               
chr3:30266505-30266707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
108, 74
               

               
Conread position:
               
97-296
               

               
Cow position:
               
chr3:63860421-63860626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
96, 198
               

               
Conread position:
               
97-297
               

               
Cow position:
               
chr3:6265980-6265769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
19, 203
               

               
Conread position:
               
97-298
               

               
Cow position:
               
chr3:53604557-53604763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
102, 13
               

               
Conread position:
               
97-300
               

               
Cow position:
               
chr3:76056098-76056304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 195
               

               
Conread position:
               
97-302
               

               
Cow position:
               
chr3:11027467-11027253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
19, 200
               

               
Conread position:
               
97-302
               

               
Cow position:
               
chr3:75966592-75966806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
19, 184
               

               
Conread position:
               
97-308
               

               
Cow position:
               
chr3:13240883-13241107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
97-330
               

               
Cow position:
               
chr3:11229181-11229418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
97-330
               

               
Cow position:
               
chr3:40212844-40213086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
97-331
               

               
Cow position:
               
chr3:56948908-56949142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
95, 14
               

               
Conread position:
               
97-332
               

               
Cow position:
               
chr3:10842005-10841757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
97-333
               

               
Cow position:
               
chr3:83889441-83889191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
97-362
               

               
Cow position:
               
chr3:23203041-23203317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
108, 19
               

               
Conread position:
               
97-387
               

               
Cow position:
               
chr3:55124093-55124390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 49
               

               
Conread position:
               
97-403
               

               
Cow position:
               
chr3:5696539-5696852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 68
               

               
Conread position:
               
97-412
               

               
Cow position:
               
chr3:72342434-72342113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
110, 13
               

               
Conread position:
               
97-418
               

               
Cow position:
               
chr3:175132-174810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
109, 52
               

               
Conread position:
               
97-419
               

               
Cow position:
               
chr3:36375346-36375680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 90
               

               
Conread position:
               
97-420
               

               
Cow position:
               
chr3:2518351-2518671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 141
               

               
Conread position:
               
97-420
               

               
Cow position:
               
chr3:24468196-24468518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 14
               

               
Conread position:
               
97-420
               

               
Cow position:
               
chr3:26982238-26981927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
85, 43
               

               
Conread position:
               
97-420
               

               
Cow position:
               
chr3:29813415-29813105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
77, 166
               

               
Conread position:
               
97-420
               

               
Cow position:
               
chr3:31077536-31077868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
110, 34
               

               
Conread position:
               
97-420
               

               
Cow position:
               
chr3:68145663-68145981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 48
               

               
Conread position:
               
97-420
               

               
Cow position:
               
chr3:70761934-70762262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 138
               

               
Conread position:
               
97-428
               

               
Cow position:
               
chr3:31309167-31309501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
110, 13
               

               
Conread position:
               
97-441
               

               
Cow position:
               
chr3:19793084-19792738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
97-441
               

               
Cow position:
               
chr3:38035400-38035746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
108, 14
               

               
Conread position:
               
97-441
               

               
Cow position:
               
chr3:59035231-59034879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
106, 18
               

               
Conread position:
               
98-205
               

               
Cow position:
               
chr3:41746315-41746418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
98-250
               

               
Cow position:
               
chr3:20888469-20888633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 143
               

               
Conread position:
               
98-269
               

               
Cow position:
               
chr3:10591326-10591493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
98-277
               

               
Cow position:
               
chr3:32248198-32248014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
106, 18
               

               
Conread position:
               
98-282
               

               
Cow position:
               
chr3:2016619-2016433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
103, 11
               

               
Conread position:
               
98-284
               

               
Cow position:
               
chr3:16710608-16710804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
98-284
               

               
Cow position:
               
chr3:27286704-27286514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 136
               

               
Conread position:
               
98-284
               

               
Cow position:
               
chr3:79893307-79893502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
98-286
               

               
Cow position:
               
chr3:12178250-12178050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
18, 171
               

               
Conread position:
               
98-286
               

               
Cow position:
               
chr3:21112455-21112644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
98-286
               

               
Cow position:
               
chr3:27082852-27083049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 141
               

               
Conread position:
               
98-289
               

               
Cow position:
               
chr3:38248845-38248646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 180
               

               
Conread position:
               
98-301
               

               
Cow position:
               
chr3:18479107-18479322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
18, 141
               

               
Conread position:
               
98-313
               

               
Cow position:
               
chr3:78071604-78071828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
98-317
               

               
Cow position:
               
chr3:4120180-4120406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
14, 105
               

               
Conread position:
               
98-317
               

               
Cow position:
               
chr3:6728130-6728370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
98-325
               

               
Cow position:
               
chr3:54067982-54067749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
108, 45
               

               
Conread position:
               
98-329
               

               
Cow position:
               
chr3:4549205-4548975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
94, 45
               

               
Conread position:
               
98-330
               

               
Cow position:
               
chr3:11281956-11281713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
98-331
               

               
Cow position:
               
chr3:17134520-17134280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
98-366
               

               
Cow position:
               
chr3:36160011-36160280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 56
               

               
Conread position:
               
98-367
               

               
Cow position:
               
chr3:39873521-39873784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
180, 13
               

               
Conread position:
               
98-386
               

               
Cow position:
               
chr3:3316619-3316918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 174
               

               
Conread position:
               
98-403
               

               
Cow position:
               
chr3:14725505-14725180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 141
               

               
Conread position:
               
98-416
               

               
Cow position:
               
chr3:26904289-26903981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 81
               

               
Conread position:
               
98-420
               

               
Cow position:
               
chr3:10958058-10958382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 16
               

               
Conread position:
               
98-420
               

               
Cow position:
               
chr3:43233688-43233369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
94, 9
               

               
Conread position:
               
98-420
               

               
Cow position:
               
chr3:46005829-46006165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
98-420
               

               
Cow position:
               
chr3:48900143-48900477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
98-420
               

               
Cow position:
               
chr3:65058887-65058564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
37, 204
               

               
Conread position:
               
98-420
               

               
Cow position:
               
chr3:81039558-81039884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
98-439
               

               
Cow position:
               
chr3:23877183-23876842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
98-439
               

               
Cow position:
               
chr3:55819937-55819595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
184, 79
               

               
Conread position:
               
98-441
               

               
Cow position:
               
chr3:20802454-20802784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 10
               

               
Conread position:
               
98-441
               

               
Cow position:
               
chr3:30462990-30463320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
132, 16
               

               
Conread position:
               
98-441
               

               
Cow position:
               
chr3:59719038-59718688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 47
               

               
Conread position:
               
99-204
               

               
Cow position:
               
chr3:52499007-52499114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
99-205
               

               
Cow position:
               
chr3:2636748-2636853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
99-258
               

               
Cow position:
               
chr3:58562888-58562715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
99-264
               

               
Cow position:
               
chr3:64909907-64910080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
99-282
               

               
Cow position:
               
chr3:46259900-46259708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
99-282
               

               
Cow position:
               
chr3:81255626-81255818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
17, 161
               

               
Conread position:
               
99-283
               

               
Cow position:
               
chr3:23037323-23037512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
106, 11
               

               
Conread position:
               
99-284
               

               
Cow position:
               
chr3:59947856-59947661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
99-284
               

               
Cow position:
               
chr3:64800359-64800554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
99-286
               

               
Cow position:
               
chr3:6299643-6299450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
108, 9
               

               
Conread position:
               
99-287
               

               
Cow position:
               
chr3:84807136-84807335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
99-298
               

               
Cow position:
               
chr3:986200-985997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
106, 11
               

               
Conread position:
               
99-298
               

               
Cow position:
               
chr3:15160703-15160503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
102, 16
               

               
Conread position:
               
99-300
               

               
Cow position:
               
chr3:22734074-22734285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
105, 44
               

               
Conread position:
               
99-300
               

               
Cow position:
               
chr3:61023834-61024042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
99-331
               

               
Cow position:
               
chr3:7763845-7763601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
105, 165
               

               
Conread position:
               
99-332
               

               
Cow position:
               
chr3:21866853-21867093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
106, 11
               

               
Conread position:
               
99-332
               

               
Cow position:
               
chr3:48810450-48810700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
99-338
               

               
Cow position:
               
chr3:48483363-48483120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
108, 16
               

               
Conread position:
               
99-394
               

               
Cow position:
               
chr3:4268386-4268696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
17, 245
               

               
Conread position:
               
99-402
               

               
Cow position:
               
chr3:56678162-56678475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
99-403
               

               
Cow position:
               
chr3:71478779-71478470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 46
               

               
Conread position:
               
99-410
               

               
Cow position:
               
chr3:48459143-48459464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
99-415
               

               
Cow position:
               
chr3:55177565-55177885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
89, 12
               

               
Conread position:
               
99-417
               

               
Cow position:
               
chr3:53222199-53221878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 136
               

               
Conread position:
               
99-419
               

               
Cow position:
               
chr3:2675217-2674890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
107, 11
               

               
Conread position:
               
99-420
               

               
Cow position:
               
chr3:3889389-3889706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
12, 108
               

               
Conread position:
               
99-420
               

               
Cow position:
               
chr3:18459349-18459660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
99-420
               

               
Cow position:
               
chr3:62046858-62046523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
98, 232
               

               
Conread position:
               
99-420
               

               
Cow position:
               
chr3:76156172-76155846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
103, 12
               

               
Conread position:
               
99-428
               

               
Cow position:
               
chr3:73764028-73764342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
271, 77
               

               
Conread position:
               
99-436
               

               
Cow position:
               
chr3:13380091-13380441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
102, 190
               

               
Conread position:
               
99-439
               

               
Cow position:
               
chr3:14601523-14601865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
99-441
               

               
Cow position:
               
chr3:17456080-17456419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
89, 243
               

               
Conread position:
               
99-441
               

               
Cow position:
               
chr3:49118843-49119181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
97, 166
               

               
Conread position:
               
100-205
               

               
Cow position:
               
chr3:66563971-66563866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-284
               

               
Cow position:
               
chr3:44207691-44207882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
104, 139
               

               
Conread position:
               
100-284
               

               
Cow position:
               
chr3:62789762-62789960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
100-300
               

               
Cow position:
               
chr3:14517895-14518102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 73
               

               
Conread position:
               
100-302
               

               
Cow position:
               
chr3:80173184-80172978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
100-327
               

               
Cow position:
               
chr3:23131982-23132219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
100-327
               

               
Cow position:
               
chr3:59702359-59702122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr3:8181763-8182022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
100-420
               

               
Cow position:
               
chr3:28908030-28908341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
182, 92
               

               
Conread position:
               
100-420
               

               
Cow position:
               
chr3:53384096-53384422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
100-441
               

               
Cow position:
               
chr3:210511-210162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
100-441
               

               
Cow position:
               
chr3:49482524-49482865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
7, 49
               

               
Conread position:
               
100-441
               

               
Cow position:
               
chr3:68707836-68708158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
100-441
               

               
Cow position:
               
chr3:68880945-68881266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
292, 105
               

               
Conread position:
               
101-205
               

               
Cow position:
               
chr3:52147256-52147360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
87, 64
               

               
Conread position:
               
101-283
               

               
Cow position:
               
chr3:39912501-39912686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
101-293
               

               
Cow position:
               
chr3:61680502-61680305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
104, 155
               

               
Conread position:
               
101-298
               

               
Cow position:
               
chr3:84137627-84137832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
17, 196
               

               
Conread position:
               
101-301
               

               
Cow position:
               
chr3:18831606-18831397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
10, 100
               

               
Conread position:
               
101-308
               

               
Cow position:
               
chr3:5703361-5703147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 144
               

               
Conread position:
               
101-332
               

               
Cow position:
               
chr3:39996709-39996946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
91, 19
               

               
Conread position:
               
101-400
               

               
Cow position:
               
chr3:15153875-15153569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
17, 255
               

               
Conread position:
               
101-404
               

               
Cow position:
               
chr3:61893998-61894292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
137, 44
               

               
Conread position:
               
101-416
               

               
Cow position:
               
chr3:2396610-2396914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
117, 94
               

               
Conread position:
               
101-420
               

               
Cow position:
               
chr3:15051768-15052091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
87, 10
               

               
Conread position:
               
101-420
               

               
Cow position:
               
chr3:51233919-51234235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 105
               

               
Conread position:
               
101-441
               

               
Cow position:
               
chr3:33252706-33253035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
16, 235
               

               
Conread position:
               
101-441
               

               
Cow position:
               
chr3:37041601-37041256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
103, 43
               

               
Conread position:
               
102-259
               

               
Cow position:
               
chr3:22899544-22899712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
102-264
               

               
Cow position:
               
chr3:23804684-23804521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 9
               

               
Conread position:
               
102-280
               

               
Cow position:
               
chr3:4931646-4931841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
102-284
               

               
Cow position:
               
chr3:28905158-28904966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
102-284
               

               
Cow position:
               
chr3:55730281-55730473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
102-398
               

               
Cow position:
               
chr3:4319903-4319594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
59, 249
               

               
Conread position:
               
103-261
               

               
Cow position:
               
chr3:49787737-49787577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
85, 7
               

               
Conread position:
               
103-265
               

               
Cow position:
               
chr3:621624-621449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr3:73513878-73514047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 66
               

               
Conread position:
               
103-289
               

               
Cow position:
               
chr3:35883749-35883944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
103-420
               

               
Cow position:
               
chr3:48363252-48362945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
98, 186
               

               
Conread position:
               
104-205
               

               
Cow position:
               
chr3:72626560-72626661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
104-264
               

               
Cow position:
               
chr3:19641246-19641074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
95, 7
               

               
Conread position:
               
104-264
               

               
Cow position:
               
chr3:62998811-62998976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
104-284
               

               
Cow position:
               
chr3:63845121-63844933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
97, 7
               

               
Conread position:
               
104-286
               

               
Cow position:
               
chr3:56583029-56582842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 7
               

               
Conread position:
               
104-329
               

               
Cow position:
               
chr3:74644741-74644505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
99, 7
               

               
Conread position:
               
104-331
               

               
Cow position:
               
chr3:84174487-84174247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 119
               

               
Conread position:
               
104-332
               

               
Cow position:
               
chr3:29334230-29334472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
103, 7
               

               
Conread position:
               
104-333
               

               
Cow position:
               
chr3:6182052-6182277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
72, 7
               

               
Conread position:
               
104-389
               

               
Cow position:
               
chr3:60389935-60389659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
104-441
               

               
Cow position:
               
chr3:5365847-5365517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
178, 74
               

               
Conread position:
               
105-306
               

               
Cow position:
               
chr3:28896840-28897048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
73, 132
               

               
Conread position:
               
105-327
               

               
Cow position:
               
chr3:3556730-3556494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
105-419
               

               
Cow position:
               
chr3:58764905-58765217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
177, 73
               

               
Conread position:
               
105-420
               

               
Cow position:
               
chr3:44102148-44101832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
105-420
               

               
Cow position:
               
chr3:45882080-45881770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 230
               

               
Conread position:
               
105-420
               

               
Cow position:
               
chr3:57274241-57273927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
105-425
               

               
Cow position:
               
chr3:2392787-2393107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
17, 179
               

               
Conread position:
               
105-439
               

               
Cow position:
               
chr3:76267793-76268134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
74, 327
               

               
Conread position:
               
105-441
               

               
Cow position:
               
chr3:5374490-5374180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
197, 34
               

               
Conread position:
               
105-441
               

               
Cow position:
               
chr3:59597357-59597029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
15, 187
               

               
Conread position:
               
106-241
               

               
Cow position:
               
chr3:53249665-53249527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
106-264
               

               
Cow position:
               
chr3:59699470-59699635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
106-277
               

               
Cow position:
               
chr3:63069180-63069363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
106-282
               

               
Cow position:
               
chr3:47198945-47199129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
106-283
               

               
Cow position:
               
chr3:27246787-27246962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
106-284
               

               
Cow position:
               
chr3:41366519-41366714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
106-286
               

               
Cow position:
               
chr3:73924860-73925039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
91, 70
               

               
Conread position:
               
106-287
               

               
Cow position:
               
chr3:54557846-54557667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
106-294
               

               
Cow position:
               
chr3:59885712-59885527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 103
               

               
Conread position:
               
106-297
               

               
Cow position:
               
chr3:8526199-8526384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
176, 50
               

               
Conread position:
               
106-298
               

               
Cow position:
               
chr3:59681727-59681921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
95, 185
               

               
Conread position:
               
106-300
               

               
Cow position:
               
chr3:12669319-12669113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
87, 145
               

               
Conread position:
               
106-300
               

               
Cow position:
               
chr3:74127319-74127522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 170
               

               
Conread position:
               
106-331
               

               
Cow position:
               
chr3:34095791-34096016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 96
               

               
Conread position:
               
106-410
               

               
Cow position:
               
chr3:3649059-3649347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
174, 70
               

               
Conread position:
               
106-415
               

               
Cow position:
               
chr3:79884300-79884615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
70, 194
               

               
Conread position:
               
106-420
               

               
Cow position:
               
chr3:1517336-1517653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
72, 12
               

               
Conread position:
               
106-420
               

               
Cow position:
               
chr3:3985497-3985188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
11, 86
               

               
Conread position:
               
106-420
               

               
Cow position:
               
chr3:48241787-48241477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
106-420
               

               
Cow position:
               
chr3:75158535-75158220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
100, 37
               

               
Conread position:
               
106-423
               

               
Cow position:
               
chr3:59474300-59473978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
70, 111
               

               
Conread position:
               
106-424
               

               
Cow position:
               
chr3:17235024-17235352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
89, 241
               

               
Conread position:
               
106-428
               

               
Cow position:
               
chr3:70333789-70334111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 212
               

               
Conread position:
               
106-438
               

               
Cow position:
               
chr3:75050443-75050777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
86, 25
               

               
Conread position:
               
106-439
               

               
Cow position:
               
chr3:83215449-83215101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
72, 240
               

               
Conread position:
               
106-441
               

               
Cow position:
               
chr3:13890665-13890313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 247
               

               
Conread position:
               
106-441
               

               
Cow position:
               
chr3:53592505-53592851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
9, 251
               

               
Conread position:
               
106-441
               

               
Cow position:
               
chr3:57754295-57754634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
97, 76
               

               
Conread position:
               
106-441
               

               
Cow position:
               
chr3:67929078-67929418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
9, 117
               

               
Conread position:
               
106-441
               

               
Cow position:
               
chr3:71231578-71231241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
72, 165
               

               
Conread position:
               
106-441
               

               
Cow position:
               
chr3:77365112-77365453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 26
               

               
Conread position:
               
107-286
               

               
Cow position:
               
chr3:31793702-31793890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
107-286
               

               
Cow position:
               
chr3:35802756-35802947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
107-329
               

               
Cow position:
               
chr3:75687750-75687981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
107-419
               

               
Cow position:
               
chr3:58960413-58960724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 103
               

               
Conread position:
               
108-368
               

               
Cow position:
               
chr3:11640910-11640640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
109-258
               

               
Cow position:
               
chr3:44218945-44218787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
109-282
               

               
Cow position:
               
chr3:29234501-29234684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
109-284
               

               
Cow position:
               
chr3:5900289-5900117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
109-292
               

               
Cow position:
               
chr3:25735726-25735920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
109-299
               

               
Cow position:
               
chr3:25702154-25702360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
79, 196
               

               
Conread position:
               
109-326
               

               
Cow position:
               
chr3:49996540-49996772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
109-329
               

               
Cow position:
               
chr3:68303495-68303263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
109-332
               

               
Cow position:
               
chr3:29946563-29946331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
98, 12
               

               
Conread position:
               
109-333
               

               
Cow position:
               
chr3:2638111-2637870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
110-290
               

               
Cow position:
               
chr3:2637121-2636939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
91, 39
               

               
Conread position:
               
110-404
               

               
Cow position:
               
chr3:54373681-54373982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
84, 134
               

               
Conread position:
               
110-420
               

               
Cow position:
               
chr3:59610543-59610860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 61
               

               
Conread position:
               
111-205
               

               
Cow position:
               
chr3:10454019-10453925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
111-259
               

               
Cow position:
               
chr3:22078253-22078096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
111-260
               

               
Cow position:
               
chr3:31804595-31804739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
111-264
               

               
Cow position:
               
chr3:56754360-56754517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 135
               

               
Conread position:
               
111-274
               

               
Cow position:
               
chr3:3453757-3453585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
111-278
               

               
Cow position:
               
chr3:16867998-16867825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
67, 109
               

               
Conread position:
               
111-283
               

               
Cow position:
               
chr3:8147348-8147528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
91, 59
               

               
Conread position:
               
111-284
               

               
Cow position:
               
chr3:23640514-23640339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
111-284
               

               
Cow position:
               
chr3:37641501-37641321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
111-289
               

               
Cow position:
               
chr3:80910772-80910586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
111-296
               

               
Cow position:
               
chr3:59268549-59268356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
111-298
               

               
Cow position:
               
chr3:4271540-4271355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 32
               

               
Conread position:
               
111-299
               

               
Cow position:
               
chr3:45314527-45314322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
111-318
               

               
Cow position:
               
chr3:84928282-84928062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 166
               

               
Conread position:
               
111-319
               

               
Cow position:
               
chr3:54905781-54905576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
182, 65
               

               
Conread position:
               
111-319
               

               
Cow position:
               
chr3:82366305-82366087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 167
               

               
Conread position:
               
111-326
               

               
Cow position:
               
chr3:20996827-20997051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
89, 82
               

               
Conread position:
               
111-330
               

               
Cow position:
               
chr3:30357684-30357470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
170, 70
               

               
Conread position:
               
111-331
               

               
Cow position:
               
chr3:3698819-3698605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
171, 76
               

               
Conread position:
               
111-386
               

               
Cow position:
               
chr3:17936672-17936946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
172, 95
               

               
Conread position:
               
111-386
               

               
Cow position:
               
chr3:52651905-52652187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
92, 214
               

               
Conread position:
               
111-387
               

               
Cow position:
               
chr3:29359989-29360252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
183, 65
               

               
Conread position:
               
111-401
               

               
Cow position:
               
chr3:22221501-22221199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
86, 160
               

               
Conread position:
               
111-401
               

               
Cow position:
               
chr3:80740728-80740443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
111-419
               

               
Cow position:
               
chr3:49460751-49461068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 48
               

               
Conread position:
               
111-420
               

               
Cow position:
               
chr3:8393514-8393212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
111-420
               

               
Cow position:
               
chr3:15443551-15443869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 235
               

               
Conread position:
               
111-420
               

               
Cow position:
               
chr3:39969688-39970007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
91, 245
               

               
Conread position:
               
111-420
               

               
Cow position:
               
chr3:56476849-56476541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
110, 47
               

               
Conread position:
               
111-420
               

               
Cow position:
               
chr3:65969349-65969022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
111-428
               

               
Cow position:
               
chr3:2506300-2506623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
12, 139
               

               
Conread position:
               
111-428
               

               
Cow position:
               
chr3:73395290-73394974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 53
               

               
Conread position:
               
111-441
               

               
Cow position:
               
chr3:13329618-13329932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
246, 100
               

               
Conread position:
               
111-441
               

               
Cow position:
               
chr3:38828926-38828613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
81, 50
               

               
Conread position:
               
111-441
               

               
Cow position:
               
chr3:44932687-44932358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
87, 136
               

               
Conread position:
               
111-441
               

               
Cow position:
               
chr3:53790367-53790691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
111-441
               

               
Cow position:
               
chr3:76138634-76138325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
111-442
               

               
Cow position:
               
chr3:2648333-2648669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
93, 247
               

               
Conread position:
               
112-319
               

               
Cow position:
               
chr3:23753658-23753458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
112-331
               

               
Cow position:
               
chr3:25477966-25477752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
182, 65
               

               
Conread position:
               
112-412
               

               
Cow position:
               
chr3:65413092-65413411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 238
               

               
Conread position:
               
113-283
               

               
Cow position:
               
chr3:2538410-2538238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 164
               

               
Conread position:
               
113-296
               

               
Cow position:
               
chr3:59272004-59271814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 133
               

               
Conread position:
               
113-325
               

               
Cow position:
               
chr3:39066502-39066284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
113-420
               

               
Cow position:
               
chr3:64280765-64281071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
75, 101
               

               
Conread position:
               
113-420
               

               
Cow position:
               
chr3:77582279-77581970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
90, 175
               

               
Conread position:
               
113-420
               

               
Cow position:
               
chr3:78093220-78093523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
114-327
               

               
Cow position:
               
chr3:31489878-31489676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
115-300
               

               
Cow position:
               
chr3:77654091-77653908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
115-357
               

               
Cow position:
               
chr3:14547170-14546924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
79, 111
               

               
Conread position:
               
115-420
               

               
Cow position:
               
chr3:54100542-54100860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
63, 228
               

               
Conread position:
               
115-420
               

               
Cow position:
               
chr3:54435139-54434835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
84, 112
               

               
Conread position:
               
115-420
               

               
Cow position:
               
chr3:71161959-71161656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
115-420
               

               
Cow position:
               
chr3:74533505-74533213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
165, 56
               

               
Conread position:
               
115-439
               

               
Cow position:
               
chr3:59451769-59451436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
26, 93
               

               
Conread position:
               
115-441
               

               
Cow position:
               
chr3:60597708-60597388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
76, 153
               

               
Conread position:
               
116-330
               

               
Cow position:
               
chr3:10668709-10668932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
73, 159
               

               
Conread position:
               
116-441
               

               
Cow position:
               
chr3:63180034-63179706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 227
               

               
Conread position:
               
117-276
               

               
Cow position:
               
chr3:67942364-67942532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
117-286
               

               
Cow position:
               
chr3:77171487-77171309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
117-313
               

               
Cow position:
               
chr3:70756470-70756679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
117-389
               

               
Cow position:
               
chr3:65019684-65019974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 232
               

               
Conread position:
               
117-390
               

               
Cow position:
               
chr3:20033978-20034255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
91, 81
               

               
Conread position:
               
117-403
               

               
Cow position:
               
chr3:49679303-49679004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
87, 229
               

               
Conread position:
               
117-428
               

               
Cow position:
               
chr3:74846556-74846859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
185, 54
               

               
Conread position:
               
118-362
               

               
Cow position:
               
chr3:1889938-1890194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
84, 223
               

               
Conread position:
               
120-304
               

               
Cow position:
               
chr3:83199679-83199487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
85, 176
               

               
Conread position:
               
120-305
               

               
Cow position:
               
chr3:62312964-62312772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
77, 145
               

               
Conread position:
               
120-305
               

               
Cow position:
               
chr3:62370223-62370031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
77, 145
               

               
Conread position:
               
120-412
               

               
Cow position:
               
chr3:12978449-12978747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
85, 226
               

               
Conread position:
               
120-415
               

               
Cow position:
               
chr3:7662023-7661718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
77, 153
               

               
Conread position:
               
121-264
               

               
Cow position:
               
chr3:68624384-68624233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
122-404
               

               
Cow position:
               
chr3:59000599-59000875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 135
               

               
Conread position:
               
123-325
               

               
Cow position:
               
chr3:1028484-1028694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
123-362
               

               
Cow position:
               
chr3:40145630-40145385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
75, 174
               

               
Conread position:
               
123-396
               

               
Cow position:
               
chr3:75238623-75238341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
82, 209
               

               
Conread position:
               
123-441
               

               
Cow position:
               
chr3:53046495-53046813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
65, 164
               

               
Conread position:
               
123-441
               

               
Cow position:
               
chr3:66900564-66900896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
123-442
               

               
Cow position:
               
chr3:19793427-19793748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
81, 124
               

               
Conread position:
               
124-286
               

               
Cow position:
               
chr3:6579642-6579482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
124-420
               

               
Cow position:
               
chr3:7566259-7566558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
62, 90
               

               
Conread position:
               
125-418
               

               
Cow position:
               
chr3:70334531-70334832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
77, 215
               

               
Conread position:
               
126-420
               

               
Cow position:
               
chr3:11987488-11987189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
77, 219
               

               
Conread position:
               
127-420
               

               
Cow position:
               
chr3:4050340-4050055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
36, 50
               

               
Conread position:
               
129-367
               

               
Cow position:
               
chr3:84250392-84250631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 53
               

               
Conread position:
               
132-404
               

               
Cow position:
               
chr3:34271053-34270792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
99, 61
               

               
Conread position:
               
134-332
               

               
Cow position:
               
chr3:33048240-33048450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
136-327
               

               
Cow position:
               
chr3:46266353-46266151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 185
               

               
Conread position:
               
136-417
               

               
Cow position:
               
chr3:25945245-25944948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
137-283
               

               
Cow position:
               
chr3:25060478-25060324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
138-441
               

               
Cow position:
               
chr3:55010023-55010320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
292, 150
               

               
Conread position:
               
140-420
               

               
Cow position:
               
chr3:68582863-68583141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
129, 9
               

               
Conread position:
               
140-420
               

               
Cow position:
               
chr3:77271133-77271413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 8
               

               
Conread position:
               
140-441
               

               
Cow position:
               
chr3:72391234-72390928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
62, 160
               

               
Conread position:
               
144-441
               

               
Cow position:
               
chr3:6690145-6689844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
56, 188
               

               
Conread position:
               
145-420
               

               
Cow position:
               
chr3:73820221-73820509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 183
               

               
Conread position:
               
145-420
               

               
Cow position:
               
chr3:74119287-74119579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 209
               

               
Conread position:
               
148-441
               

               
Cow position:
               
chr3:15751576-15751876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 161
               

               
Conread position:
               
148-441
               

               
Cow position:
               
chr3:54960304-54960033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
150-420
               

               
Cow position:
               
chr3:67930055-67930322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
152-420
               

               
Cow position:
               
chr3:73709181-73708908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
39, 188
               

               
Conread position:
               
157-442
               

               
Cow position:
               
chr3:28898090-28898378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
46, 185
               

               
Conread position:
               
158-420
               

               
Cow position:
               
chr3:80565092-80564824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 161
               

               
Conread position:
               
159-420
               

               
Cow position:
               
chr3:79270837-79271097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
164-428
               

               
Cow position:
               
chr3:82461298-82461031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 171
               

               
Conread position:
               
171-420
               

               
Cow position:
               
chr3:66883836-66884079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
124, 7
               

               
Conread position:
               
174-420
               

               
Cow position:
               
chr3:67704655-67704403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
177-415
               

               
Cow position:
               
chr3:12711809-12712052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
24, 167
               

               
Conread position:
               
177-420
               

               
Cow position:
               
chr3:17934835-17935073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
105, 160
               

               
Conread position:
               
178-284
               

               
Cow position:
               
chr3:15683052-15683156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
178-390
               

               
Cow position:
               
chr3:33329918-33329704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
109, 11
               

               
Conread position:
               
180-412
               

               
Cow position:
               
chr3:22510132-22509895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 66
               

               
Conread position:
               
183-420
               

               
Cow position:
               
chr3:38691310-38691546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 28
               

               
Conread position:
               
183-439
               

               
Cow position:
               
chr3:59883968-59884225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 160
               

               
Conread position:
               
183-441
               

               
Cow position:
               
chr3:80053442-80053698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
19, 38
               

               
Conread position:
               
187-420
               

               
Cow position:
               
chr3:5097297-5097067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
200-398
               

               
Cow position:
               
chr3:37599348-37599544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
102, 88
               

               
Conread position:
               
200-411
               

               
Cow position:
               
chr3:52017851-52017638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
84, 146
               

               
Conread position:
               
200-416
               

               
Cow position:
               
chr3:42423248-42423468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
200-418
               

               
Cow position:
               
chr3:59621568-59621782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 129
               

               
Conread position:
               
200-420
               

               
Cow position:
               
chr3:53113255-53113034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 131
               

               
Conread position:
               
200-420
               

               
Cow position:
               
chr3:57624544-57624326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
82, 95
               

               
Conread position:
               
200-420
               

               
Cow position:
               
chr3:72676171-72675953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 135
               

               
Conread position:
               
200-425
               

               
Cow position:
               
chr3:8394022-8393792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
63, 139
               

               
Conread position:
               
200-426
               

               
Cow position:
               
chr3:72503816-72504045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
88, 137
               

               
Conread position:
               
200-428
               

               
Cow position:
               
chr3:5366848-5366624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 60
               

               
Conread position:
               
200-428
               

               
Cow position:
               
chr3:49790732-49790957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
81, 113
               

               
Conread position:
               
200-440
               

               
Cow position:
               
chr3:11712045-11711804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
85, 225
               

               
Conread position:
               
200-440
               

               
Cow position:
               
chr3:49383029-49382795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
88, 137
               

               
Conread position:
               
200-440
               

               
Cow position:
               
chr3:80581735-80581510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
94, 66
               

               
Conread position:
               
200-441
               

               
Cow position:
               
chr3:14626070-14626312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
110, 166
               

               
Conread position:
               
200-441
               

               
Cow position:
               
chr3:34669653-34669882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
170, 88
               

               
Conread position:
               
200-441
               

               
Cow position:
               
chr3:49650468-49650231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
94, 149
               

               
Conread position:
               
200-441
               

               
Cow position:
               
chr3:55085089-55085337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
88, 143
               

               
Conread position:
               
200-441
               

               
Cow position:
               
chr3:74502245-74502476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 136
               

               
Conread position:
               
201-441
               

               
Cow position:
               
chr3:71430125-71430362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
85, 143
               

               
Conread position:
               
202-404
               

               
Cow position:
               
chr3:56300-56500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
100, 9
               

               
Conread position:
               
202-441
               

               
Cow position:
               
chr3:52863106-52863339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
80, 122
               

               
Conread position:
               
203-412
               

               
Cow position:
               
chr3:84175746-84175957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
81, 136
               

               
Conread position:
               
203-428
               

               
Cow position:
               
chr3:57760575-57760352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
79, 127
               

               
Conread position:
               
204-420
               

               
Cow position:
               
chr3:66292099-66292316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
16, 147
               

               
Conread position:
               
211-419
               

               
Cow position:
               
chr3:17895917-17895708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 21
               

               
Conread position:
               
211-428
               

               
Cow position:
               
chr3:3638247-3638040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
83, 52
               

               
Conread position:
               
211-441
               

               
Cow position:
               
chr3:23444819-23445048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
71, 162
               

               
Conread position:
               
211-442
               

               
Cow position:
               
chr3:24935434-24935209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
71, 121
               

               
Conread position:
               
213-420
               

               
Cow position:
               
chr3:78896714-78896510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 105
               

               
Conread position:
               
228-439
               

               
Cow position:
               
chr3:46350723-46350511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
230-441
               

               
Cow position:
               
chr3:66609794-66609997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
61, 92
               

               
Conread position:
               
230-441
               

               
Cow position:
               
chr3:74878539-74878746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 106
               

               
Conread position:
               
239-441
               

               
Cow position:
               
chr3:61171467-61171665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
41, 98
               

               
Conread position:
               
240-439
               

               
Cow position:
               
chr3:19708068-19708257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 36
               
Show alignments to all cow chromosomes.