Cow genome map
| Conread name: | Ss1.1-rhea11_d17.5 |
| Conread position: | 68-390 |
| Cow position: | chr2:41121252-41121577 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 115-374 |
| Cow position: | chr2:58465935-58466194 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 8, 87 |
| Conread position: | 116-374 |
| Cow position: | chr2:52379836-52380091 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 136, 90 |
| Conread position: | 117-354 |
| Cow position: | chr2:841605-841371 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-366 |
| Cow position: | chr2:11726669-11726425 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-366 |
| Cow position: | chr2:16326638-16326883 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-366 |
| Cow position: | chr2:48849946-48850191 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 117-366 |
| Cow position: | chr2:49475197-49474952 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-366 |
| Cow position: | chr2:83887217-83886972 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 117-374 |
| Cow position: | chr2:825657-825912 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 121, 77 |
| Conread position: | 117-374 |
| Cow position: | chr2:4916761-4917016 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-374 |
| Cow position: | chr2:5152538-5152283 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 117-374 |
| Cow position: | chr2:6529123-6528869 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-374 |
| Cow position: | chr2:6594005-6593750 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-374 |
| Cow position: | chr2:8529967-8529712 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-374 |
| Cow position: | chr2:16171977-16172232 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 117-374 |
| Cow position: | chr2:21606837-21606583 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 121, 60 |
| Conread position: | 117-374 |
| Cow position: | chr2:37396676-37396421 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 80 |
| Conread position: | 117-374 |
| Cow position: | chr2:40729784-40729529 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-374 |
| Cow position: | chr2:48722030-48721775 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 83 |
| Conread position: | 117-374 |
| Cow position: | chr2:51161870-51161614 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 105, 83 |
| Conread position: | 117-374 |
| Cow position: | chr2:61516823-61517078 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 106, 77 |
| Conread position: | 117-374 |
| Cow position: | chr2:68422848-68422593 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 117-374 |
| Cow position: | chr2:73187898-73187644 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 123, 83 |
| Conread position: | 117-374 |
| Cow position: | chr2:84964449-84964704 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 117-379 |
| Cow position: | chr2:11813253-11813513 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-388 |
| Cow position: | chr2:39425107-39424840 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-394 |
| Cow position: | chr2:2084087-2084361 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 84 |
| Conread position: | 117-394 |
| Cow position: | chr2:4450754-4451028 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 117-394 |
| Cow position: | chr2:10608500-10608774 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 117-394 |
| Cow position: | chr2:51225981-51226255 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-394 |
| Cow position: | chr2:63069995-63070267 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 138, 77 |
| Conread position: | 117-394 |
| Cow position: | chr2:77859614-77859342 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 117-408 |
| Cow position: | chr2:86508140-86508426 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 117-409 |
| Cow position: | chr2:52622071-52621785 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 118-432 |
| Cow position: | chr2:26349396-26349706 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 123, 74 |
| Conread position: | 119-366 |
| Cow position: | chr2:24875909-24876152 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 104, 81 |
| Conread position: | 119-370 |
| Cow position: | chr2:10468919-10468673 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 78 |
| Conread position: | 119-370 |
| Cow position: | chr2:12596232-12595985 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 81 |
| Conread position: | 119-370 |
| Cow position: | chr2:80892777-80893024 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 119, 81 |
| Conread position: | 119-374 |
| Cow position: | chr2:2761796-2762048 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 121-384 |
| Cow position: | chr2:4399840-4400099 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 102, 11 |
| Conread position: | 132-420 |
| Cow position: | chr2:44439729-44440017 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 108, 82 |
| Conread position: | 136-366 |
| Cow position: | chr2:36983929-36983703 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 111, 64 |
| Conread position: | 136-370 |
| Cow position: | chr2:21981480-21981710 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 64 |
| Conread position: | 144-366 |
| Cow position: | chr2:41045598-41045816 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 94, 56 |
| Conread position: | 144-366 |
| Cow position: | chr2:47034407-47034633 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 42, 168 |
| Conread position: | 144-374 |
| Cow position: | chr2:15983891-15984118 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 56 |
| Conread position: | 144-374 |
| Cow position: | chr2:19048601-19048829 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 56 |
| Conread position: | 144-374 |
| Cow position: | chr2:22345287-22345059 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 56 |
| Conread position: | 144-374 |
| Cow position: | chr2:39629845-39630073 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 94, 56 |
| Conread position: | 144-374 |
| Cow position: | chr2:48716996-48716768 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 50 |
| Conread position: | 144-374 |
| Cow position: | chr2:53182448-53182676 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 56 |
| Conread position: | 144-374 |
| Cow position: | chr2:74468724-74468952 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 56 |
| Conread position: | 144-378 |
| Cow position: | chr2:72693223-72692992 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 33 |
| Conread position: | 144-394 |
| Cow position: | chr2:44094633-44094387 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 79, 56 |
| Conread position: | 146-409 |
| Cow position: | chr2:4742631-4742375 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 92, 54 |
| Conread position: | 217-398 |
| Cow position: | chr2:49300816-49300996 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 251-420 |
| Cow position: | chr2:4699876-4699704 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 113, 55 |
Show alignments to all cow chromosomes.