Cow genome map
| Conread name: | Ss1.1-rhea11_d17.5 |
| Conread position: | 97-431 |
| Cow position: | chr5:58529896-58530232 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 36 |
| Conread position: | 109-374 |
| Cow position: | chr5:60519093-60519359 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 115-374 |
| Cow position: | chr5:58192499-58192242 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 123, 85 |
| Conread position: | 116-366 |
| Cow position: | chr5:59065026-59064780 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 122, 84 |
| Conread position: | 116-394 |
| Cow position: | chr5:31285440-31285165 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 107, 84 |
| Conread position: | 117-366 |
| Cow position: | chr5:23881749-23881993 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-366 |
| Cow position: | chr5:46587483-46587728 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-366 |
| Cow position: | chr5:47590013-47590258 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-373 |
| Cow position: | chr5:68255004-68255266 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 129, 68 |
| Conread position: | 117-374 |
| Cow position: | chr5:4041719-4041464 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-374 |
| Cow position: | chr5:5106804-5106550 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 117-374 |
| Cow position: | chr5:10260843-10261097 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-374 |
| Cow position: | chr5:10514701-10514446 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-374 |
| Cow position: | chr5:11834880-11835135 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-374 |
| Cow position: | chr5:27046489-27046235 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 81 |
| Conread position: | 117-374 |
| Cow position: | chr5:36369410-36369665 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-374 |
| Cow position: | chr5:37609427-37609682 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-374 |
| Cow position: | chr5:37626428-37626173 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-374 |
| Cow position: | chr5:43395874-43395619 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 121, 76 |
| Conread position: | 117-374 |
| Cow position: | chr5:56931309-56931564 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-379 |
| Cow position: | chr5:53075288-53075547 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-383 |
| Cow position: | chr5:37782553-37782816 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 117-408 |
| Cow position: | chr5:1394869-1395165 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 196 |
| Conread position: | 119-366 |
| Cow position: | chr5:44708792-44709035 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 81 |
| Conread position: | 119-388 |
| Cow position: | chr5:13807183-13807447 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 13 |
| Conread position: | 132-394 |
| Cow position: | chr5:37288749-37288492 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 123, 68 |
| Conread position: | 132-408 |
| Cow position: | chr5:2977354-2977082 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 68 |
| Conread position: | 136-366 |
| Cow position: | chr5:32614481-32614713 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 143-366 |
| Cow position: | chr5:6455107-6455326 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 57 |
| Conread position: | 144-366 |
| Cow position: | chr5:45179294-45179510 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 56 |
| Conread position: | 144-374 |
| Cow position: | chr5:446034-445806 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 56 |
| Conread position: | 144-374 |
| Cow position: | chr5:825763-825535 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 56 |
| Conread position: | 144-374 |
| Cow position: | chr5:6124608-6124836 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 79, 56 |
| Conread position: | 144-374 |
| Cow position: | chr5:27906913-27907141 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 56 |
| Conread position: | 144-374 |
| Cow position: | chr5:29255659-29255887 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 84, 50 |
| Conread position: | 145-374 |
| Cow position: | chr5:57335810-57336037 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 93, 55 |
Show alignments to all cow chromosomes.