Cow genome map
| Conread name: | Ss1.1-rhyp01c_d6.5 |
| Conread position: | 59-673 |
| Cow position: | chr11:7051536-7050910 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 76-526 |
| Cow position: | chr11:8516441-8515982 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 156-801 |
| Cow position: | chr11:7045138-7044495 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 105 |
| Conread position: | 157-436 |
| Cow position: | chr11:9740692-9740421 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 163-393 |
| Cow position: | chr11:8531310-8531537 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 115, 26 |
| Conread position: | 163-429 |
| Cow position: | chr11:49603571-49603820 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 96, 50 |
| Conread position: | 163-643 |
| Cow position: | chr11:72092546-72093029 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 212 |
| Conread position: | 176-414 |
| Cow position: | chr11:39999174-39998935 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 102, 68 |
| Conread position: | 404-653 |
| Cow position: | chr11:77161393-77161145 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 171, 97 |
| Conread position: | 408-618 |
| Cow position: | chr11:14673723-14673928 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 408-631 |
| Cow position: | chr11:4678294-4678074 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 131, 53 |
| Conread position: | 408-631 |
| Cow position: | chr11:39276714-39276935 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 103, 165 |
| Conread position: | 408-631 |
| Cow position: | chr11:64814216-64813992 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 134, 183 |
| Conread position: | 408-637 |
| Cow position: | chr11:35577327-35577088 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 128, 191 |
| Conread position: | 408-650 |
| Cow position: | chr11:38680129-38679887 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 169, 30 |
| Conread position: | 411-655 |
| Cow position: | chr11:26305135-26305377 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 130, 59 |
| Conread position: | 416-655 |
| Cow position: | chr11:37334986-37334750 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 125, 157 |
| Conread position: | 419-616 |
| Cow position: | chr11:76871194-76871393 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 67, 158 |
| Conread position: | 419-622 |
| Cow position: | chr11:2546272-2546067 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 122, 172 |
| Conread position: | 419-626 |
| Cow position: | chr11:5292391-5292598 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 126, 56 |
| Conread position: | 419-631 |
| Cow position: | chr11:106473-106257 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 122, 168 |
| Conread position: | 419-653 |
| Cow position: | chr11:50649051-50649289 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 154, 171 |
| Conread position: | 419-655 |
| Cow position: | chr11:6575546-6575307 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 127, 67 |
| Conread position: | 420-628 |
| Cow position: | chr11:76599676-76599885 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 420-655 |
| Cow position: | chr11:14135120-14134882 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 22, 170 |
| Conread position: | 420-655 |
| Cow position: | chr11:77178573-77178336 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 121, 153 |
| Conread position: | 421-628 |
| Cow position: | chr11:7662585-7662375 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 115, 73 |
| Conread position: | 425-644 |
| Cow position: | chr11:79726873-79726647 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 149, 94 |
| Conread position: | 425-650 |
| Cow position: | chr11:30084159-30084378 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 150, 37 |
| Conread position: | 425-652 |
| Cow position: | chr11:40366783-40366553 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 116, 137 |
| Conread position: | 425-653 |
| Cow position: | chr11:12167395-12167626 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 150, 102 |
| Conread position: | 428-628 |
| Cow position: | chr11:79807888-79807685 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 429-629 |
| Cow position: | chr11:37319654-37319453 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 112, 65 |
| Conread position: | 435-651 |
| Cow position: | chr11:30216135-30216347 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 196, 137 |
| Conread position: | 438-655 |
| Cow position: | chr11:81348000-81347783 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 195, 131 |
| Conread position: | 459-650 |
| Cow position: | chr11:70142579-70142777 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 76, 128 |
Show alignments to all cow chromosomes.