Cow genome map
| Conread name: | Ss1.1-rhyp01c_d6.5 |
| Conread position: | 55-631 |
| Cow position: | chr12:40549576-40548989 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 59-676 |
| Cow position: | chr12:39552376-39551747 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 158-643 |
| Cow position: | chr12:34464764-34465243 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 325 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 245, 101 |
| Conread position: | 158-643 |
| Cow position: | chr12:39937805-39937333 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 177, 5 |
| Conread position: | 163-325 |
| Cow position: | chr12:14354581-14354742 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 165-431 |
| Cow position: | chr12:16893647-16893901 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 135, 48 |
| Conread position: | 165-642 |
| Cow position: | chr12:21676359-21676831 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 31 |
| Conread position: | 183-643 |
| Cow position: | chr12:4539872-4540320 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 346, 7 |
| Conread position: | 261-654 |
| Cow position: | chr12:26213627-26214019 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 167, 110 |
| Conread position: | 408-624 |
| Cow position: | chr12:15131977-15131759 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 102, 85 |
| Conread position: | 408-631 |
| Cow position: | chr12:36069061-36069283 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 167, 78 |
| Conread position: | 408-654 |
| Cow position: | chr12:39177461-39177700 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 225, 61 |
| Conread position: | 411-625 |
| Cow position: | chr12:45703745-45703957 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 134, 45 |
| Conread position: | 419-631 |
| Cow position: | chr12:4146065-4146274 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 419-631 |
| Cow position: | chr12:31608599-31608808 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 117, 30 |
| Conread position: | 419-647 |
| Cow position: | chr12:26292478-26292708 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 133, 77 |
| Conread position: | 419-647 |
| Cow position: | chr12:42786030-42786256 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 114, 67 |
| Conread position: | 419-655 |
| Cow position: | chr12:11213349-11213112 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 168, 155 |
| Conread position: | 420-623 |
| Cow position: | chr12:26174605-26174407 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 114, 150 |
| Conread position: | 420-655 |
| Cow position: | chr12:16081624-16081861 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 80, 169 |
| Conread position: | 420-655 |
| Cow position: | chr12:20225742-20225513 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 121, 105 |
| Conread position: | 420-655 |
| Cow position: | chr12:34597700-34597931 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 155, 91 |
| Conread position: | 421-630 |
| Cow position: | chr12:42940845-42941053 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 113, 153 |
| Conread position: | 421-631 |
| Cow position: | chr12:41778053-41777847 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 118, 176 |
| Conread position: | 421-634 |
| Cow position: | chr12:5982144-5982352 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 124, 72 |
| Conread position: | 424-655 |
| Cow position: | chr12:15072698-15072923 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 153, 48 |
| Conread position: | 425-642 |
| Cow position: | chr12:35638944-35638732 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 208, 142 |
| Conread position: | 425-654 |
| Cow position: | chr12:13634905-13634683 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 117, 94 |
Show alignments to all cow chromosomes.