Cow genome map
| Conread name: | Ss1.1-rhyp01c_d6.5 |
| Conread position: | 157-272 |
| Cow position: | chr13:43711987-43712101 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 5, 34 |
| Conread position: | 157-407 |
| Cow position: | chr13:5245341-5245090 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 5, 45 |
| Conread position: | 157-449 |
| Cow position: | chr13:50193813-50193536 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 5, 33 |
| Conread position: | 163-393 |
| Cow position: | chr13:55384351-55384126 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 163-412 |
| Cow position: | chr13:38018431-38018184 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 101, 29 |
| Conread position: | 211-630 |
| Cow position: | chr13:52402576-52402976 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 228-643 |
| Cow position: | chr13:36323262-36322857 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 178, 15 |
| Conread position: | 276-815 |
| Cow position: | chr13:43712127-43712662 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 91 |
| Conread position: | 329-643 |
| Cow position: | chr13:2772215-2772526 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 137, 45 |
| Conread position: | 396-654 |
| Cow position: | chr13:14610992-14610739 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 144, 73 |
| Conread position: | 397-654 |
| Cow position: | chr13:31437246-31437506 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 8, 190 |
| Conread position: | 408-631 |
| Cow position: | chr13:44434019-44433799 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 177, 88 |
| Conread position: | 408-649 |
| Cow position: | chr13:56231678-56231919 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 167, 86 |
| Conread position: | 408-654 |
| Cow position: | chr13:26367295-26367045 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 131, 177 |
| Conread position: | 410-655 |
| Cow position: | chr13:17935441-17935691 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 81, 181 |
| Conread position: | 416-631 |
| Cow position: | chr13:6349798-6350011 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 110, 70 |
| Conread position: | 419-572 |
| Cow position: | chr13:8644071-8643918 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 419-647 |
| Cow position: | chr13:20267899-20268133 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 122, 28 |
| Conread position: | 419-655 |
| Cow position: | chr13:6333636-6333865 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 218, 144 |
| Conread position: | 419-655 |
| Cow position: | chr13:55952992-55952755 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 421-567 |
| Cow position: | chr13:22945082-22944929 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 421-631 |
| Cow position: | chr13:20630463-20630670 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 421-655 |
| Cow position: | chr13:25342945-25343180 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 152, 65 |
| Conread position: | 426-652 |
| Cow position: | chr13:15853687-15853464 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 148, 87 |
Show alignments to all cow chromosomes.