Cow genome map
| Conread name: | Ss1.1-rhyp01c_d6.5 |
| Conread position: | 55-631 |
| Cow position: | chr16:13878391-13877800 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 55-631 |
| Cow position: | chr16:52619912-52619325 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 56-671 |
| Cow position: | chr16:22243220-22243836 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 23 |
| Conread position: | 156-436 |
| Cow position: | chr16:40413641-40413909 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 6, 60 |
| Conread position: | 156-810 |
| Cow position: | chr16:35415919-35415256 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 24 |
| Conread position: | 157-466 |
| Cow position: | chr16:28178014-28177718 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 5, 57 |
| Conread position: | 157-622 |
| Cow position: | chr16:3140287-3139826 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 100 |
| Conread position: | 157-654 |
| Cow position: | chr16:412675-412187 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 41 |
| Conread position: | 158-393 |
| Cow position: | chr16:23847090-23846857 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 119, 6 |
| Conread position: | 163-619 |
| Cow position: | chr16:54636815-54637264 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 208 |
| Conread position: | 163-785 |
| Cow position: | chr16:1631427-1632058 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 47 |
| Conread position: | 170-631 |
| Cow position: | chr16:45161809-45161348 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 403-631 |
| Cow position: | chr16:13513602-13513373 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 171, 187 |
| Conread position: | 404-634 |
| Cow position: | chr16:10933176-10933411 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 83, 193 |
| Conread position: | 408-631 |
| Cow position: | chr16:571200-571414 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 169, 53 |
| Conread position: | 408-631 |
| Cow position: | chr16:11484872-11484653 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 137, 51 |
| Conread position: | 408-645 |
| Cow position: | chr16:7433771-7433542 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 225, 97 |
| Conread position: | 409-653 |
| Cow position: | chr16:43861319-43861070 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 88, 183 |
| Conread position: | 419-631 |
| Cow position: | chr16:17162627-17162839 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 156, 75 |
| Conread position: | 420-571 |
| Cow position: | chr16:35446061-35445909 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 420-631 |
| Cow position: | chr16:40501566-40501775 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 121, 153 |
| Conread position: | 420-631 |
| Cow position: | chr16:56209572-56209785 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 119, 29 |
| Conread position: | 420-645 |
| Cow position: | chr16:12092787-12093014 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 6, 154 |
| Conread position: | 420-655 |
| Cow position: | chr16:10178770-10179007 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 121, 109 |
| Conread position: | 420-655 |
| Cow position: | chr16:50508253-50508017 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 213, 154 |
| Conread position: | 424-629 |
| Cow position: | chr16:35291433-35291230 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 425-631 |
| Cow position: | chr16:10669258-10669466 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 116, 160 |
| Conread position: | 425-631 |
| Cow position: | chr16:16076530-16076331 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 425-631 |
| Cow position: | chr16:16088166-16087967 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 425-652 |
| Cow position: | chr16:24587006-24586779 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 116, 45 |
| Conread position: | 425-654 |
| Cow position: | chr16:33531209-33531431 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 61 |
| Conread position: | 426-655 |
| Cow position: | chr16:49911067-49910836 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 59, 150 |
| Conread position: | 427-565 |
| Cow position: | chr16:16724918-16724779 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 427-654 |
| Cow position: | chr16:44460656-44460426 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 114, 154 |
| Conread position: | 429-645 |
| Cow position: | chr16:12004456-12004672 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 203, 142 |
| Conread position: | 458-655 |
| Cow position: | chr16:14182559-14182752 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 86, 28 |
| Conread position: | 513-811 |
| Cow position: | chr16:19263104-19262798 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 32, 64 |
Show alignments to all cow chromosomes.