Cow genome map
| Conread name: | Ss1.1-rhyp01c_d6.5 |
| Conread position: | 36-653 |
| Cow position: | chr2:35972146-35971521 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 59-810 |
| Cow position: | chr2:7292756-7293530 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 576 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 59-810 |
| Cow position: | chr2:16800635-16799862 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 76-807 |
| Cow position: | chr2:41586693-41585963 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 62 |
| Conread position: | 76-810 |
| Cow position: | chr2:46772158-46772914 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 63 |
| Conread position: | 157-436 |
| Cow position: | chr2:82294773-82294508 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 159-655 |
| Cow position: | chr2:45928215-45927733 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 105 |
| Conread position: | 163-392 |
| Cow position: | chr2:68349459-68349676 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 149, 52 |
| Conread position: | 163-431 |
| Cow position: | chr2:83886414-83886669 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 164-631 |
| Cow position: | chr2:58461768-58461299 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 166-404 |
| Cow position: | chr2:47506800-47506579 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 213-655 |
| Cow position: | chr2:40021558-40021125 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 46 |
| Conread position: | 280-436 |
| Cow position: | chr2:64572613-64572459 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 408-624 |
| Cow position: | chr2:64308078-64308298 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 153, 86 |
| Conread position: | 408-628 |
| Cow position: | chr2:69131414-69131184 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 408-631 |
| Cow position: | chr2:15263864-15263654 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 408-631 |
| Cow position: | chr2:33630921-33630706 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 408-631 |
| Cow position: | chr2:41779296-41779074 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 83, 166 |
| Conread position: | 408-631 |
| Cow position: | chr2:69134070-69133851 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 137, 71 |
| Conread position: | 408-631 |
| Cow position: | chr2:85009671-85009890 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 131, 122 |
| Conread position: | 411-606 |
| Cow position: | chr2:45934660-45934471 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 130, 38 |
| Conread position: | 416-631 |
| Cow position: | chr2:81185688-81185896 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 416-655 |
| Cow position: | chr2:21336271-21336507 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 120, 78 |
| Conread position: | 418-655 |
| Cow position: | chr2:25375585-25375823 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 73, 153 |
| Conread position: | 419-618 |
| Cow position: | chr2:39871419-39871617 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 116, 169 |
| Conread position: | 419-629 |
| Cow position: | chr2:32893195-32892983 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 47, 175 |
| Conread position: | 419-631 |
| Cow position: | chr2:35984835-35984626 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 113 |
| Conread position: | 419-654 |
| Cow position: | chr2:35453125-35453362 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 153, 40 |
| Conread position: | 419-655 |
| Cow position: | chr2:39255034-39255265 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 120, 46 |
| Conread position: | 419-655 |
| Cow position: | chr2:46566559-46566799 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 122, 13 |
| Conread position: | 419-655 |
| Cow position: | chr2:47150178-47149941 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 419-655 |
| Cow position: | chr2:86327243-86326998 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 117, 175 |
| Conread position: | 420-622 |
| Cow position: | chr2:65721371-65721171 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 121, 153 |
| Conread position: | 421-631 |
| Cow position: | chr2:29418411-29418614 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 120, 73 |
| Conread position: | 421-654 |
| Cow position: | chr2:46565279-46565045 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 120, 155 |
| Conread position: | 421-655 |
| Cow position: | chr2:68157836-68157610 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 212, 75 |
| Conread position: | 422-570 |
| Cow position: | chr2:83145239-83145093 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 123, 51 |
| Conread position: | 425-654 |
| Cow position: | chr2:37365920-37366151 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 130, 166 |
| Conread position: | 425-655 |
| Cow position: | chr2:40853074-40853304 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 120, 41 |
| Conread position: | 425-655 |
| Cow position: | chr2:49909419-49909194 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 124 |
| Conread position: | 489-654 |
| Cow position: | chr2:80805115-80804945 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 489-655 |
| Cow position: | chr2:68426714-68426881 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 86, 40 |
Show alignments to all cow chromosomes.