Cow genome map
| Conread name: | Ss1.1-rhyp01c_d6.5 |
| Conread position: | 40-436 |
| Cow position: | chr3:39174788-39175186 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 46-661 |
| Cow position: | chr3:42256701-42257334 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 7 |
| Conread position: | 59-810 |
| Cow position: | chr3:45838291-45839072 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 76-660 |
| Cow position: | chr3:14932635-14933237 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 514 |
| Conread position: | 91-625 |
| Cow position: | chr3:19239392-19238856 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 61 |
| Conread position: | 163-393 |
| Cow position: | chr3:25694815-25695040 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 59, 40 |
| Conread position: | 163-393 |
| Cow position: | chr3:25819763-25819989 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 83, 54 |
| Conread position: | 165-436 |
| Cow position: | chr3:32167864-32168123 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 178-323 |
| Cow position: | chr3:11132006-11132152 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 406-654 |
| Cow position: | chr3:1839441-1839693 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 130, 94 |
| Conread position: | 408-629 |
| Cow position: | chr3:7810525-7810311 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 165, 116 |
| Conread position: | 408-631 |
| Cow position: | chr3:22697022-22696797 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 47, 173 |
| Conread position: | 408-631 |
| Cow position: | chr3:28464917-28464696 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 165, 37 |
| Conread position: | 408-631 |
| Cow position: | chr3:28692415-28692198 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 137, 78 |
| Conread position: | 408-631 |
| Cow position: | chr3:65526274-65526055 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 408-647 |
| Cow position: | chr3:33020812-33020573 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 165, 194 |
| Conread position: | 409-628 |
| Cow position: | chr3:6049318-6049537 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 165, 87 |
| Conread position: | 413-654 |
| Cow position: | chr3:60281289-60281529 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 139, 14 |
| Conread position: | 419-562 |
| Cow position: | chr3:36781706-36781562 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 419-605 |
| Cow position: | chr3:2059687-2059871 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 122, 158 |
| Conread position: | 419-629 |
| Cow position: | chr3:10215445-10215652 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 419-631 |
| Cow position: | chr3:56308530-56308325 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 126, 96 |
| Conread position: | 419-631 |
| Cow position: | chr3:82508539-82508325 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 126, 110 |
| Conread position: | 419-655 |
| Cow position: | chr3:59205291-59205530 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 155, 171 |
| Conread position: | 420-631 |
| Cow position: | chr3:41158554-41158763 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 420-655 |
| Cow position: | chr3:49850260-49850024 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 75, 86 |
| Conread position: | 421-655 |
| Cow position: | chr3:84919032-84919267 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 115, 64 |
| Conread position: | 422-655 |
| Cow position: | chr3:83785875-83785634 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 119, 232 |
| Conread position: | 425-631 |
| Cow position: | chr3:10688211-10688003 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 166 |
| Conread position: | 426-655 |
| Cow position: | chr3:28207530-28207750 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 207, 87 |
| Conread position: | 429-641 |
| Cow position: | chr3:28500702-28500913 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 200, 143 |
| Conread position: | 429-654 |
| Cow position: | chr3:6190034-6190261 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 145, 162 |
| Conread position: | 429-654 |
| Cow position: | chr3:11952876-11952649 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 146, 57 |
| Conread position: | 431-655 |
| Cow position: | chr3:3251305-3251524 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 114, 139 |
| Conread position: | 450-655 |
| Cow position: | chr3:58306713-58306917 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 182, 86 |
| Conread position: | 474-631 |
| Cow position: | chr3:3255411-3255249 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 480-631 |
| Cow position: | chr3:28593364-28593215 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 86 |
| Conread position: | 485-674 |
| Cow position: | chr3:25899358-25899165 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 60, 106 |
Show alignments to all cow chromosomes.