Cow genome map
| Conread name: | Ss1.1-rhyp01c_d6.5 |
| Conread position: | 59-810 |
| Cow position: | chr4:5229317-5228553 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 164 |
| Conread position: | 156-810 |
| Cow position: | chr4:14528794-14528127 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 55 |
| Conread position: | 157-376 |
| Cow position: | chr4:21870235-21870023 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 5, 26 |
| Conread position: | 157-393 |
| Cow position: | chr4:7140314-7140543 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 5, 57 |
| Conread position: | 157-431 |
| Cow position: | chr4:23122977-23122711 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 157-613 |
| Cow position: | chr4:28871847-28871395 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 58 |
| Conread position: | 164-401 |
| Cow position: | chr4:28610580-28610345 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 164-432 |
| Cow position: | chr4:14946987-14947252 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 26 |
| Conread position: | 167-440 |
| Cow position: | chr4:57717783-57717523 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 348-673 |
| Cow position: | chr4:12652371-12652043 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 28 |
| Conread position: | 408-631 |
| Cow position: | chr4:58431884-58431661 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 166, 88 |
| Conread position: | 408-654 |
| Cow position: | chr4:3868533-3868781 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 167, 88 |
| Conread position: | 408-655 |
| Cow position: | chr4:43420853-43420603 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 150, 112 |
| Conread position: | 411-631 |
| Cow position: | chr4:66835671-66835895 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 107, 176 |
| Conread position: | 411-810 |
| Cow position: | chr4:12226618-12227027 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 48 |
| Conread position: | 419-647 |
| Cow position: | chr4:48235904-48236134 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 122, 47 |
| Conread position: | 419-654 |
| Cow position: | chr4:10980343-10980115 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 123, 75 |
| Conread position: | 419-654 |
| Cow position: | chr4:65944710-65944479 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 126, 48 |
| Conread position: | 419-655 |
| Cow position: | chr4:44085919-44086158 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 155, 171 |
| Conread position: | 420-631 |
| Cow position: | chr4:32024846-32024637 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 110, 169 |
| Conread position: | 420-650 |
| Cow position: | chr4:28223797-28224028 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 89, 154 |
| Conread position: | 420-654 |
| Cow position: | chr4:28285802-28286043 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 154, 116 |
| Conread position: | 421-631 |
| Cow position: | chr4:3463741-3463952 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 154, 169 |
| Conread position: | 421-655 |
| Cow position: | chr4:63394217-63393991 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 119, 51 |
| Conread position: | 421-655 |
| Cow position: | chr4:63398814-63398588 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 119, 51 |
| Conread position: | 421-675 |
| Cow position: | chr4:57717304-57717054 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 154, 92 |
| Conread position: | 425-644 |
| Cow position: | chr4:14480409-14480190 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 110, 153 |
| Conread position: | 425-647 |
| Cow position: | chr4:18006342-18006125 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 120 |
| Conread position: | 426-653 |
| Cow position: | chr4:43465824-43465601 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 207, 70 |
| Conread position: | 429-629 |
| Cow position: | chr4:64369766-64369571 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 140 |
| Conread position: | 435-574 |
| Cow position: | chr4:57940814-57940951 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 438-654 |
| Cow position: | chr4:13150318-13150536 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 108, 140 |
Show alignments to all cow chromosomes.