Cow genome map
| Conread name: | Ss1.1-rhyp01c_d6.5 |
| Conread position: | 56-675 |
| Cow position: | chr5:24889251-24888616 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 23 |
| Conread position: | 59-810 |
| Cow position: | chr5:8764951-8764176 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 59-810 |
| Cow position: | chr5:47995835-47996613 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 76-516 |
| Cow position: | chr5:21505339-21504890 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 60 |
| Conread position: | 90-643 |
| Cow position: | chr5:18658161-18657595 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 135 |
| Conread position: | 157-431 |
| Cow position: | chr5:67099036-67098774 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 157-654 |
| Cow position: | chr5:53638590-53638112 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 332 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 5, 40 |
| Conread position: | 159-628 |
| Cow position: | chr5:47991157-47991623 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 51 |
| Conread position: | 163-436 |
| Cow position: | chr5:46783100-46783361 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 138, 50 |
| Conread position: | 163-452 |
| Cow position: | chr5:46272824-46273096 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 163-642 |
| Cow position: | chr5:45499994-45500459 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 318 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 233, 17 |
| Conread position: | 164-333 |
| Cow position: | chr5:15191971-15192144 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 252-675 |
| Cow position: | chr5:48136106-48135688 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 60 |
| Conread position: | 406-654 |
| Cow position: | chr5:23628744-23628495 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 133, 57 |
| Conread position: | 408-630 |
| Cow position: | chr5:70705292-70705076 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 167, 128 |
| Conread position: | 408-631 |
| Cow position: | chr5:63515599-63515817 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 410-631 |
| Cow position: | chr5:47619296-47619516 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 134, 163 |
| Conread position: | 411-631 |
| Cow position: | chr5:64796457-64796237 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 416-647 |
| Cow position: | chr5:42183120-42183355 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 120, 187 |
| Conread position: | 419-631 |
| Cow position: | chr5:42820483-42820272 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 156, 67 |
| Conread position: | 419-642 |
| Cow position: | chr5:25896133-25896357 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 122, 154 |
| Conread position: | 419-647 |
| Cow position: | chr5:18585276-18585044 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 43, 175 |
| Conread position: | 419-647 |
| Cow position: | chr5:64103717-64103948 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 116, 165 |
| Conread position: | 419-651 |
| Cow position: | chr5:12219447-12219214 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 123, 161 |
| Conread position: | 419-653 |
| Cow position: | chr5:9969771-9969537 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 111, 46 |
| Conread position: | 420-631 |
| Cow position: | chr5:75573104-75573316 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 154, 182 |
| Conread position: | 421-631 |
| Cow position: | chr5:42099782-42099982 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 422-647 |
| Cow position: | chr5:70720485-70720708 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 113, 64 |
| Conread position: | 425-643 |
| Cow position: | chr5:23742647-23742431 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 77, 147 |
| Conread position: | 428-629 |
| Cow position: | chr5:17737334-17737131 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 145, 10 |
| Conread position: | 430-654 |
| Cow position: | chr5:73480070-73480294 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 153, 15 |
| Conread position: | 431-610 |
| Cow position: | chr5:51921109-51921291 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 105, 154 |
| Conread position: | 431-647 |
| Cow position: | chr5:29076234-29076012 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 24, 166 |
| Conread position: | 436-631 |
| Cow position: | chr5:2441014-2441211 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 105, 149 |
| Conread position: | 445-627 |
| Cow position: | chr5:42785361-42785545 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 96, 158 |
| Conread position: | 459-674 |
| Cow position: | chr5:18775373-18775587 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 80, 114 |
Show alignments to all cow chromosomes.