Cow genome map
| Conread name: | Ss1.1-rhyp01c_d6.5 |
| Conread position: | 23-631 |
| Cow position: | chr7:50590313-50589692 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 59-810 |
| Cow position: | chr7:18107285-18108056 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 76-631 |
| Cow position: | chr7:13800488-13801060 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 76-631 |
| Cow position: | chr7:28441084-28440538 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 76-810 |
| Cow position: | chr7:3661612-3662368 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 63 |
| Conread position: | 84-631 |
| Cow position: | chr7:30544205-30544761 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 123 |
| Conread position: | 92-631 |
| Cow position: | chr7:11650629-11650080 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 133 |
| Conread position: | 145-643 |
| Cow position: | chr7:20871445-20871929 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 18 |
| Conread position: | 163-432 |
| Cow position: | chr7:42324780-42325047 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 110, 38 |
| Conread position: | 163-590 |
| Cow position: | chr7:27115709-27116128 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 163-629 |
| Cow position: | chr7:27467382-27466910 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 309 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 163-647 |
| Cow position: | chr7:16140501-16140017 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 406-655 |
| Cow position: | chr7:50718678-50718424 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 130, 81 |
| Conread position: | 408-631 |
| Cow position: | chr7:38470145-38469923 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 167, 86 |
| Conread position: | 408-631 |
| Cow position: | chr7:50754540-50754765 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 128, 78 |
| Conread position: | 408-653 |
| Cow position: | chr7:51755880-51756131 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 118, 154 |
| Conread position: | 408-654 |
| Cow position: | chr7:2753309-2753064 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 167, 20 |
| Conread position: | 408-654 |
| Cow position: | chr7:38810840-38811090 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 133, 183 |
| Conread position: | 408-655 |
| Cow position: | chr7:57380172-57380422 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 166, 182 |
| Conread position: | 411-631 |
| Cow position: | chr7:31108067-31108283 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 166, 52 |
| Conread position: | 412-631 |
| Cow position: | chr7:38470633-38470413 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 122, 60 |
| Conread position: | 412-659 |
| Cow position: | chr7:3916631-3916378 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 419-655 |
| Cow position: | chr7:25828959-25828722 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 126, 60 |
| Conread position: | 420-646 |
| Cow position: | chr7:161346-161578 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 121, 173 |
| Conread position: | 421-655 |
| Cow position: | chr7:40899896-40900127 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 131, 56 |
| Conread position: | 421-655 |
| Cow position: | chr7:62014710-62014937 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 212, 90 |
| Conread position: | 425-655 |
| Cow position: | chr7:12266341-12266102 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 426-630 |
| Cow position: | chr7:49929609-49929400 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 112 |
| Conread position: | 427-655 |
| Cow position: | chr7:937092-936865 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 109, 56 |
| Conread position: | 458-655 |
| Cow position: | chr7:47886439-47886644 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 81, 137 |
Show alignments to all cow chromosomes.