Cow genome map
| Conread name: | Ss1.1-rhyp01c_d6.5 |
| Conread position: | 55-631 |
| Cow position: | chrX:40599196-40598606 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 59-631 |
| Cow position: | chrX:9514529-9515113 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 59-810 |
| Cow position: | chrX:830529-831315 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 165 |
| Conread position: | 65-625 |
| Cow position: | chrX:26464242-26463674 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 14 |
| Conread position: | 65-631 |
| Cow position: | chrX:30035399-30035985 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 76-416 |
| Cow position: | chrX:31859903-31859552 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 58, 151 |
| Conread position: | 76-674 |
| Cow position: | chrX:42570079-42570685 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 253 |
| Conread position: | 78-590 |
| Cow position: | chrX:26803537-26803032 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 89-631 |
| Cow position: | chrX:29149172-29149739 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 136 |
| Conread position: | 157-393 |
| Cow position: | chrX:42417405-42417185 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 157-631 |
| Cow position: | chrX:17790741-17791209 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 195 |
| Conread position: | 157-631 |
| Cow position: | chrX:31204406-31203938 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 163-811 |
| Cow position: | chrX:12649599-12648963 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 87 |
| Conread position: | 167-628 |
| Cow position: | chrX:26412150-26411696 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 187-436 |
| Cow position: | chrX:24394991-24394755 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 254-406 |
| Cow position: | chrX:15266928-15267079 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 38, 124 |
| Conread position: | 267-628 |
| Cow position: | chrX:26888124-26887752 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 384-655 |
| Cow position: | chrX:32978625-32978906 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 213 |
| Conread position: | 408-631 |
| Cow position: | chrX:39861275-39861057 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 408-631 |
| Cow position: | chrX:45893242-45893019 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 136, 78 |
| Conread position: | 408-647 |
| Cow position: | chrX:47336050-47336292 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 136, 119 |
| Conread position: | 416-655 |
| Cow position: | chrX:25306498-25306738 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 124, 161 |
| Conread position: | 419-655 |
| Cow position: | chrX:29919610-29919852 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 66, 186 |
| Conread position: | 420-608 |
| Cow position: | chrX:28698083-28698272 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 156 |
| Conread position: | 420-631 |
| Cow position: | chrX:39528689-39528477 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 153, 164 |
| Conread position: | 420-655 |
| Cow position: | chrX:37074784-37075015 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 213, 156 |
| Conread position: | 425-630 |
| Cow position: | chrX:47331476-47331682 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 116, 102 |
| Conread position: | 425-654 |
| Cow position: | chrX:19503615-19503387 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 190, 25 |
| Conread position: | 429-631 |
| Cow position: | chrX:34827505-34827308 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 434-631 |
| Cow position: | chrX:31859490-31859282 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 97, 25 |
| Conread position: | 460-674 |
| Cow position: | chrX:42467250-42467469 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 85, 115 |
| Conread position: | 474-643 |
| Cow position: | chrX:15267123-15267298 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 100, 0 |
Show alignments to all cow chromosomes.