Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-rhyp29c_b19.5
        

               Conread position:
               1-93
               

               Cow position:
               chrX:42381768-42381676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               93
               

               Alignm identity:
               79
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-94
               

               Cow position:
               chrX:22866860-22866767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               94
               

               Alignm identity:
               80
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-100
               

               Cow position:
               chrX:25816595-25816496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               100
               

               Alignm identity:
               84
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-106
               

               Cow position:
               chrX:32419848-32419954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               107
               

               Alignm identity:
               90
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               1-108
               

               Cow position:
               chrX:1514766-1514658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               92
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-108
               

               Cow position:
               chrX:4943344-4943236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               88
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               1-108
               

               Cow position:
               chrX:12724429-12724537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               88
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               1-114
               

               Cow position:
               chrX:39757693-39757809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-116
               

               Cow position:
               chrX:4750713-4750601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               96
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               1-118
               

               Cow position:
               chrX:1823722-1823842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-118
               

               Cow position:
               chrX:19842222-19842106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               93
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               1-118
               

               Cow position:
               chrX:22603779-22603659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-118
               

               Cow position:
               chrX:37572824-37572944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               102
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-133
               

               Cow position:
               chrX:12690999-12690864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               107
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-134
               

               Cow position:
               chrX:23341337-23341201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-134
               

               Cow position:
               chrX:39292083-39291947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-136
               

               Cow position:
               chrX:40224583-40224445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-137
               

               Cow position:
               chrX:14008995-14008854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               1-137
               

               Cow position:
               chrX:19399438-19399577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-137
               

               Cow position:
               chrX:28542222-28542083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-137
               

               Cow position:
               chrX:39185833-39185972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-138
               

               Cow position:
               chrX:45851591-45851732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               1-140
               

               Cow position:
               chrX:15231968-15231826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               116
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               7, 73
               

               Conread position:
               1-140
               

               Cow position:
               chrX:17892203-17892345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-144
               

               Cow position:
               chrX:38852819-38852962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-155
               

               Cow position:
               chrX:47177935-47177778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               87, 131
               

               Conread position:
               1-157
               

               Cow position:
               chrX:22449574-22449738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-157
               

               Cow position:
               chrX:42530247-42530093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-162
               

               Cow position:
               chrX:6407005-6407163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               58, 128
               

               Conread position:
               1-166
               

               Cow position:
               chrX:43199097-43199263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-168
               

               Cow position:
               chrX:2278026-2277857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               1-168
               

               Cow position:
               chrX:8325920-8326088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               93, 120
               

               Conread position:
               1-168
               

               Cow position:
               chrX:23038337-23038170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               93, 127
               

               Conread position:
               1-171
               

               Cow position:
               chrX:47654964-47655133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               94, 147
               

               Conread position:
               1-172
               

               Cow position:
               chrX:40321287-40321463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-174
               

               Cow position:
               chrX:37760528-37760702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               125, 98
               

               Conread position:
               1-176
               

               Cow position:
               chrX:525336-525514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-176
               

               Cow position:
               chrX:24788056-24787883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               93, 122
               

               Conread position:
               1-176
               

               Cow position:
               chrX:44983629-44983450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-176
               

               Cow position:
               chrX:45945293-45945468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-177
               

               Cow position:
               chrX:36794654-36794833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               145
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-178
               

               Cow position:
               chrX:5118823-5118645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               1-179
               

               Cow position:
               chrX:42221908-42221732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               92, 138
               

               Conread position:
               1-194
               

               Cow position:
               chrX:12437575-12437384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               1-194
               

               Cow position:
               chrX:40648326-40648519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               153
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-197
               

               Cow position:
               chrX:40602624-40602821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               93, 140
               

               Conread position:
               1-200
               

               Cow position:
               chrX:626384-626183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-200
               

               Cow position:
               chrX:23135235-23135434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               155
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-200
               

               Cow position:
               chrX:37205379-37205589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               108, 177
               

               Conread position:
               1-200
               

               Cow position:
               chrX:39698986-39699189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               160
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-201
               

               Cow position:
               chrX:17691921-17692123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               94, 13
               

               Conread position:
               1-203
               

               Cow position:
               chrX:6558510-6558718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-203
               

               Cow position:
               chrX:16853729-16853524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               161
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-203
               

               Cow position:
               chrX:21844294-21844502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-203
               

               Cow position:
               chrX:26506281-26506079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               39, 88
               

               Conread position:
               1-205
               

               Cow position:
               chrX:2351722-2351929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               164
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-208
               

               Cow position:
               chrX:38577193-38577402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               170
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 108
               

               Conread position:
               1-208
               

               Cow position:
               chrX:40180210-40180003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               94, 137
               

               Conread position:
               1-209
               

               Cow position:
               chrX:27749349-27749139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               93, 183
               

               Conread position:
               1-211
               

               Cow position:
               chrX:12810780-12810995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               93, 130
               

               Conread position:
               1-213
               

               Cow position:
               chrX:21862010-21861795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               94, 35
               

               Conread position:
               1-216
               

               Cow position:
               chrX:9898682-9898463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-219
               

               Cow position:
               chrX:10718170-10718390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               94, 128
               

               Conread position:
               1-219
               

               Cow position:
               chrX:15718017-15717800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               93, 58
               

               Conread position:
               1-219
               

               Cow position:
               chrX:21344052-21344275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               1-219
               

               Cow position:
               chrX:24173508-24173287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-222
               

               Cow position:
               chrX:24102639-24102863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-222
               

               Cow position:
               chrX:27982485-27982262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               92, 128
               

               Conread position:
               1-222
               

               Cow position:
               chrX:32747318-32747544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-222
               

               Cow position:
               chrX:39386605-39386382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               168
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-223
               

               Cow position:
               chrX:7677628-7677854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-223
               

               Cow position:
               chrX:27616498-27616719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               1-223
               

               Cow position:
               chrX:41846874-41846649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-227
               

               Cow position:
               chrX:24320612-24320387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               188, 0
               

               Conread position:
               1-227
               

               Cow position:
               chrX:41433759-41433535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               94, 13
               

               Conread position:
               1-228
               

               Cow position:
               chrX:22115622-22115392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               180
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               93, 126
               

               Conread position:
               1-229
               

               Cow position:
               chrX:31373238-31373466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               93, 69
               

               Conread position:
               1-230
               

               Cow position:
               chrX:9593475-9593243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-230
               

               Cow position:
               chrX:30837033-30837265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               174
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-231
               

               Cow position:
               chrX:22600756-22600526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               92, 130
               

               Conread position:
               1-234
               

               Cow position:
               chrX:16722147-16721906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 232
               

               Conread position:
               1-236
               

               Cow position:
               chrX:41304079-41303848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               1-237
               

               Cow position:
               chrX:47219595-47219358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               93, 207
               

               Conread position:
               1-248
               

               Cow position:
               chrX:14134841-14135091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               1-250
               

               Cow position:
               chrX:20887984-20887738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               190
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               84, 130
               

               Conread position:
               1-250
               

               Cow position:
               chrX:22811546-22811797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               93, 130
               

               Conread position:
               1-250
               

               Cow position:
               chrX:23316760-23316509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               236, 0
               

               Conread position:
               1-254
               

               Cow position:
               chrX:2524070-2523813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               1-254
               

               Cow position:
               chrX:21255697-21255953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               93, 141
               

               Conread position:
               1-254
               

               Cow position:
               chrX:30863539-30863282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               189
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-254
               

               Cow position:
               chrX:41192350-41192598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               192
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               93, 121
               

               Conread position:
               1-255
               

               Cow position:
               chrX:38140372-38140119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               135, 59
               

               Conread position:
               1-256
               

               Cow position:
               chrX:160372-160119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               187
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               87, 136
               

               Conread position:
               1-256
               

               Cow position:
               chrX:630633-630392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               178, 28
               

               Conread position:
               1-257
               

               Cow position:
               chrX:3161356-3161099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               194
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               93, 214
               

               Conread position:
               1-257
               

               Cow position:
               chrX:19689875-19690136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               80, 37
               

               Conread position:
               1-257
               

               Cow position:
               chrX:25283480-25283235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-257
               

               Cow position:
               chrX:45043218-45043477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               94, 127
               

               Conread position:
               1-259
               

               Cow position:
               chrX:5892888-5893150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               192
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-259
               

               Cow position:
               chrX:11566574-11566836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-259
               

               Cow position:
               chrX:11715802-11715540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-259
               

               Cow position:
               chrX:27318875-27319138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-259
               

               Cow position:
               chrX:29760359-29760621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-259
               

               Cow position:
               chrX:33764004-33764266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-259
               

               Cow position:
               chrX:47362226-47361964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-260
               

               Cow position:
               chrX:18950085-18949823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-260
               

               Cow position:
               chrX:24280595-24280863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               193
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-261
               

               Cow position:
               chrX:47743736-47743996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               10, 222
               

               Conread position:
               1-262
               

               Cow position:
               chrX:10916414-10916668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               199
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               94, 187
               

               Conread position:
               1-264
               

               Cow position:
               chrX:126451-126713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               195
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               90, 212
               

               Conread position:
               1-264
               

               Cow position:
               chrX:9252514-9252255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               1-265
               

               Cow position:
               chrX:44096213-44096481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-272
               

               Cow position:
               chrX:32978597-32978323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 183
               

               Conread position:
               1-273
               

               Cow position:
               chrX:21795156-21795428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 130
               

               Conread position:
               1-275
               

               Cow position:
               chrX:48224526-48224250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               198
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               80, 209
               

               Conread position:
               1-277
               

               Cow position:
               chrX:16706459-16706742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               69, 273
               

               Conread position:
               1-277
               

               Cow position:
               chrX:16713857-16714136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               95, 204
               

               Conread position:
               1-279
               

               Cow position:
               chrX:27105918-27106200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 270
               

               Conread position:
               1-280
               

               Cow position:
               chrX:20029907-20030195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               93, 224
               

               Conread position:
               1-280
               

               Cow position:
               chrX:25452210-25452485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               93, 48
               

               Conread position:
               1-280
               

               Cow position:
               chrX:30180266-30179985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 219
               

               Conread position:
               1-281
               

               Cow position:
               chrX:22821074-22821358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               93, 269
               

               Conread position:
               1-285
               

               Cow position:
               chrX:1550610-1550898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 270
               

               Conread position:
               1-285
               

               Cow position:
               chrX:12179628-12179909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               93, 128
               

               Conread position:
               1-285
               

               Cow position:
               chrX:14407790-14407504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               207
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               93, 147
               

               Conread position:
               1-285
               

               Cow position:
               chrX:27498428-27498716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 270
               

               Conread position:
               1-285
               

               Cow position:
               chrX:27590373-27590092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 89
               

               Conread position:
               1-285
               

               Cow position:
               chrX:28518063-28517777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               94, 48
               

               Conread position:
               1-285
               

               Cow position:
               chrX:29777702-29777989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               93, 204
               

               Conread position:
               1-285
               

               Cow position:
               chrX:29848971-29848685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               206
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               93, 226
               

               Conread position:
               1-285
               

               Cow position:
               chrX:32188699-32188415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               93, 192
               

               Conread position:
               1-285
               

               Cow position:
               chrX:38151348-38151637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 271
               

               Conread position:
               1-285
               

               Cow position:
               chrX:48310080-48309796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               93, 21
               

               Conread position:
               1-286
               

               Cow position:
               chrX:6543916-6544200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 212
               

               Conread position:
               1-286
               

               Cow position:
               chrX:17794655-17794927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               263, 92
               

               Conread position:
               1-286
               

               Cow position:
               chrX:21227134-21227419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               93, 27
               

               Conread position:
               1-286
               

               Cow position:
               chrX:29048693-29048965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               263, 13
               

               Conread position:
               1-286
               

               Cow position:
               chrX:31443160-31442877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 59
               

               Conread position:
               1-286
               

               Cow position:
               chrX:34238380-34238665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 132
               

               Conread position:
               1-286
               

               Cow position:
               chrX:35268553-35268826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 9
               

               Conread position:
               1-286
               

               Cow position:
               chrX:36250202-36249917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 203
               

               Conread position:
               1-286
               

               Cow position:
               chrX:43218052-43218351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               204
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               95, 231
               

               Conread position:
               1-290
               

               Cow position:
               chrX:29915565-29915272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               93, 78
               

               Conread position:
               1-296
               

               Cow position:
               chrX:45967822-45968114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               93, 203
               

               Conread position:
               1-300
               

               Cow position:
               chrX:1055733-1055436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               59, 142
               

               Conread position:
               1-300
               

               Cow position:
               chrX:15259959-15259656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-300
               

               Cow position:
               chrX:20582690-20582984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 209
               

               Conread position:
               1-300
               

               Cow position:
               chrX:45399838-45399533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               94, 215
               

               Conread position:
               1-301
               

               Cow position:
               chrX:11581597-11581904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 16
               

               Conread position:
               1-301
               

               Cow position:
               chrX:41403621-41403938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-301
               

               Cow position:
               chrX:41410169-41410486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-302
               

               Cow position:
               chrX:2945209-2944903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               210
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               12, 271
               

               Conread position:
               1-302
               

               Cow position:
               chrX:4123495-4123798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 238
               

               Conread position:
               1-302
               

               Cow position:
               chrX:30163578-30163275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               93, 171
               

               Conread position:
               1-302
               

               Cow position:
               chrX:31729118-31729402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               93, 129
               

               Conread position:
               1-302
               

               Cow position:
               chrX:35388247-35387942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 270
               

               Conread position:
               1-302
               

               Cow position:
               chrX:44731260-44731558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               207
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               1-303
               

               Cow position:
               chrX:7806038-7806341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               217
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               94, 74
               

               Conread position:
               1-308
               

               Cow position:
               chrX:35409328-35409624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 135
               

               Conread position:
               1-308
               

               Cow position:
               chrX:40452553-40452243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 267
               

               Conread position:
               1-309
               

               Cow position:
               chrX:917710-917398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 140
               

               Conread position:
               1-309
               

               Cow position:
               chrX:1947061-1946744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               216
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               93, 275
               

               Conread position:
               1-309
               

               Cow position:
               chrX:5017746-5017447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 107
               

               Conread position:
               1-309
               

               Cow position:
               chrX:7054075-7053763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               222
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               94, 140
               

               Conread position:
               1-309
               

               Cow position:
               chrX:10866207-10865900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 130
               

               Conread position:
               1-309
               

               Cow position:
               chrX:12249461-12249769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 190
               

               Conread position:
               1-309
               

               Cow position:
               chrX:13177797-13177501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               232
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               117, 64
               

               Conread position:
               1-309
               

               Cow position:
               chrX:15329313-15329613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               225
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               94, 130
               

               Conread position:
               1-309
               

               Cow position:
               chrX:15485965-15485657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 215
               

               Conread position:
               1-309
               

               Cow position:
               chrX:16078329-16078631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               93, 130
               

               Conread position:
               1-309
               

               Cow position:
               chrX:18695261-18694957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 207
               

               Conread position:
               1-309
               

               Cow position:
               chrX:21665931-21665625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 75
               

               Conread position:
               1-309
               

               Cow position:
               chrX:21785428-21785735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               222
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               94, 68
               

               Conread position:
               1-309
               

               Cow position:
               chrX:24441587-24441275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-309
               

               Cow position:
               chrX:25035726-25035412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 85
               

               Conread position:
               1-309
               

               Cow position:
               chrX:25419500-25419190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               217
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               97, 137
               

               Conread position:
               1-309
               

               Cow position:
               chrX:30143624-30143313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 81
               

               Conread position:
               1-309
               

               Cow position:
               chrX:30454962-30454650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 270
               

               Conread position:
               1-309
               

               Cow position:
               chrX:31260971-31260660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 270
               

               Conread position:
               1-309
               

               Cow position:
               chrX:32094790-32094478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 270
               

               Conread position:
               1-309
               

               Cow position:
               chrX:33855580-33855266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               229
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               94, 57
               

               Conread position:
               1-309
               

               Cow position:
               chrX:35223962-35224263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 131
               

               Conread position:
               1-309
               

               Cow position:
               chrX:38439134-38439445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 37
               

               Conread position:
               1-309
               

               Cow position:
               chrX:38963771-38964072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 128
               

               Conread position:
               1-309
               

               Cow position:
               chrX:40544950-40544636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-309
               

               Cow position:
               chrX:42462088-42461777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 211
               

               Conread position:
               1-309
               

               Cow position:
               chrX:42733525-42733829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               93, 204
               

               Conread position:
               1-309
               

               Cow position:
               chrX:44737331-44737018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               216
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               87, 126
               

               Conread position:
               1-309
               

               Cow position:
               chrX:45089097-45089416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               93, 168
               

               Conread position:
               1-309
               

               Cow position:
               chrX:45113296-45113586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               226
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               258, 92
               

               Conread position:
               1-309
               

               Cow position:
               chrX:45674506-45674815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               95, 55
               

               Conread position:
               1-309
               

               Cow position:
               chrX:48287780-48287482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               220
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               93, 130
               

               Conread position:
               1-310
               

               Cow position:
               chrX:7178572-7178866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               256, 125
               

               Conread position:
               1-310
               

               Cow position:
               chrX:28111156-28111475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               222
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               87, 23
               

               Conread position:
               1-310
               

               Cow position:
               chrX:32309761-32310071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               220
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               93, 146
               

               Conread position:
               1-310
               

               Cow position:
               chrX:37232071-37232381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 265
               

               Conread position:
               1-310
               

               Cow position:
               chrX:38936359-38936664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 141
               

               Conread position:
               1-311
               

               Cow position:
               chrX:27705253-27705555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               93, 145
               

               Conread position:
               1-311
               

               Cow position:
               chrX:41879270-41878964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 60
               

               Conread position:
               1-312
               

               Cow position:
               chrX:21749798-21749495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               223
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               93, 41
               

               Conread position:
               1-314
               

               Cow position:
               chrX:39546313-39546002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               217
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               93, 143
               

               Conread position:
               1-315
               

               Cow position:
               chrX:21062877-21063195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               94, 54
               

               Conread position:
               1-316
               

               Cow position:
               chrX:11806356-11806040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               223
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               94, 55
               

               Conread position:
               1-316
               

               Cow position:
               chrX:31436140-31436453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 206
               

               Conread position:
               1-316
               

               Cow position:
               chrX:32584153-32583831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 270
               

               Conread position:
               1-316
               

               Cow position:
               chrX:34754532-34754212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 270
               

               Conread position:
               1-317
               

               Cow position:
               chrX:1810500-1810185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               92, 9
               

               Conread position:
               1-317
               

               Cow position:
               chrX:2478967-2478645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 114
               

               Conread position:
               1-317
               

               Cow position:
               chrX:4044198-4043882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               234
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               98, 146
               

               Conread position:
               1-317
               

               Cow position:
               chrX:4905329-4905008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 209
               

               Conread position:
               1-317
               

               Cow position:
               chrX:6493392-6493710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 107
               

               Conread position:
               1-317
               

               Cow position:
               chrX:14162851-14163174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 270
               

               Conread position:
               1-317
               

               Cow position:
               chrX:15120229-15119906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               227
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               95, 272
               

               Conread position:
               1-317
               

               Cow position:
               chrX:16703330-16703653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               224
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               93, 270
               

               Conread position:
               1-317
               

               Cow position:
               chrX:16711614-16711937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               227
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               93, 270
               

               Conread position:
               1-317
               

               Cow position:
               chrX:23122044-23122369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               56, 68
               

               Conread position:
               1-317
               

               Cow position:
               chrX:23280666-23280986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 207
               

               Conread position:
               1-317
               

               Cow position:
               chrX:25741454-25741131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               93, 270
               

               Conread position:
               1-317
               

               Cow position:
               chrX:31202500-31202823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 270
               

               Conread position:
               1-317
               

               Cow position:
               chrX:35240524-35240845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 209
               

               Conread position:
               1-318
               

               Cow position:
               chrX:3154590-3154268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               46, 142
               

               Conread position:
               1-318
               

               Cow position:
               chrX:4996275-4996575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               1-318
               

               Cow position:
               chrX:11073545-11073214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               81, 229
               

               Conread position:
               1-318
               

               Cow position:
               chrX:12309728-12309407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 137
               

               Conread position:
               1-318
               

               Cow position:
               chrX:19019432-19019127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               239
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               135, 87
               

               Conread position:
               1-318
               

               Cow position:
               chrX:23564137-23563811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-318
               

               Cow position:
               chrX:24288253-24287949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               227
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               216, 127
               

               Conread position:
               1-318
               

               Cow position:
               chrX:26441120-26440799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 219
               

               Conread position:
               1-318
               

               Cow position:
               chrX:27446351-27446675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               250, 211
               

               Conread position:
               1-318
               

               Cow position:
               chrX:45412992-45412680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               100, 87
               

               Conread position:
               1-323
               

               Cow position:
               chrX:3372193-3371869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               94, 32
               

               Conread position:
               1-327
               

               Cow position:
               chrX:19290432-19290751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               237
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               93, 142
               

               Conread position:
               1-327
               

               Cow position:
               chrX:22538294-22537957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 206
               

               Conread position:
               1-327
               

               Cow position:
               chrX:27977169-27976839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 206
               

               Conread position:
               1-327
               

               Cow position:
               chrX:28105586-28105909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               94, 60
               

               Conread position:
               1-328
               

               Cow position:
               chrX:23024364-23024695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 110
               

               Conread position:
               1-328
               

               Cow position:
               chrX:40481211-40480878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 35
               

               Conread position:
               1-329
               

               Cow position:
               chrX:18897991-18897660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 147
               

               Conread position:
               1-329
               

               Cow position:
               chrX:24587794-24587459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 270
               

               Conread position:
               1-329
               

               Cow position:
               chrX:45786790-45787121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 142
               

               Conread position:
               1-330
               

               Cow position:
               chrX:323575-323891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               260, 98
               

               Conread position:
               1-330
               

               Cow position:
               chrX:1576603-1576267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               230
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:2160425-2160761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               228
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:2664669-2665005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               229
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:3417479-3417144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               228
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               87, 209
               

               Conread position:
               1-330
               

               Cow position:
               chrX:5353643-5353308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               93, 271
               

               Conread position:
               1-330
               

               Cow position:
               chrX:5376029-5376364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 273
               

               Conread position:
               1-330
               

               Cow position:
               chrX:6869903-6869566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:8782404-8782740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:9096327-9096659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 130
               

               Conread position:
               1-330
               

               Cow position:
               chrX:9128716-9129052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               230
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               94, 296
               

               Conread position:
               1-330
               

               Cow position:
               chrX:10495893-10496229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               231
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:11655738-11656083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 262
               

               Conread position:
               1-330
               

               Cow position:
               chrX:11820019-11820344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               235
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               94, 30
               

               Conread position:
               1-330
               

               Cow position:
               chrX:12347538-12347870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               228
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               87, 282
               

               Conread position:
               1-330
               

               Cow position:
               chrX:14819372-14819710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               234
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               94, 272
               

               Conread position:
               1-330
               

               Cow position:
               chrX:15114331-15114667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:15504951-15505287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:16285869-16286205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               230
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               94, 282
               

               Conread position:
               1-330
               

               Cow position:
               chrX:16359349-16359019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               224
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               251, 87
               

               Conread position:
               1-330
               

               Cow position:
               chrX:16465960-16466297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               87, 271
               

               Conread position:
               1-330
               

               Cow position:
               chrX:18118812-18118476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               93, 270
               

               Conread position:
               1-330
               

               Cow position:
               chrX:18462315-18461980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 269
               

               Conread position:
               1-330
               

               Cow position:
               chrX:19109381-19109045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               94, 271
               

               Conread position:
               1-330
               

               Cow position:
               chrX:21686280-21686610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               223
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               251, 100
               

               Conread position:
               1-330
               

               Cow position:
               chrX:22493667-22494001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 270
               

               Conread position:
               1-330
               

               Cow position:
               chrX:23109422-23109753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               224
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               251, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:23299614-23299950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 270
               

               Conread position:
               1-330
               

               Cow position:
               chrX:26229848-26229518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               233
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               93, 118
               

               Conread position:
               1-330
               

               Cow position:
               chrX:27305587-27305922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               228
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               87, 9
               

               Conread position:
               1-330
               

               Cow position:
               chrX:27759367-27759703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 296
               

               Conread position:
               1-330
               

               Cow position:
               chrX:28559175-28558839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               93, 87
               

               Conread position:
               1-330
               

               Cow position:
               chrX:28752680-28752343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:30159351-30159015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               228
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               93, 270
               

               Conread position:
               1-330
               

               Cow position:
               chrX:30823176-30823510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               93, 327
               

               Conread position:
               1-330
               

               Cow position:
               chrX:31814229-31813893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               230
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:31978184-31977850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               94, 42
               

               Conread position:
               1-330
               

               Cow position:
               chrX:36240055-36240391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               232
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               87, 296
               

               Conread position:
               1-330
               

               Cow position:
               chrX:37133874-37133540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 270
               

               Conread position:
               1-330
               

               Cow position:
               chrX:38014754-38015090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               227
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:39714209-39714545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               230
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:41488505-41488170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-330
               

               Cow position:
               chrX:45263408-45263073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               230
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               87, 186
               

               Conread position:
               1-331
               

               Cow position:
               chrX:35533511-35533848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-332
               

               Cow position:
               chrX:15531494-15531156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               234
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               94, 9
               

               Conread position:
               1-333
               

               Cow position:
               chrX:14974068-14973746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               166, 81
               

               Conread position:
               1-333
               

               Cow position:
               chrX:32743198-32743529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               94, 230
               

               Conread position:
               1-333
               

               Cow position:
               chrX:34502583-34502916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               263, 134
               

               Conread position:
               1-337
               

               Cow position:
               chrX:23986906-23987246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               232
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               98, 35
               

               Conread position:
               1-339
               

               Cow position:
               chrX:7718516-7718854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 234
               

               Conread position:
               1-339
               

               Cow position:
               chrX:8899684-8900027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 269
               

               Conread position:
               1-339
               

               Cow position:
               chrX:13070941-13070597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               235
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               94, 47
               

               Conread position:
               1-339
               

               Cow position:
               chrX:13091501-13091157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               235
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               94, 47
               

               Conread position:
               1-339
               

               Cow position:
               chrX:18244649-18244991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               93, 122
               

               Conread position:
               1-339
               

               Cow position:
               chrX:22888318-22888666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               240
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-339
               

               Cow position:
               chrX:29841509-29841162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               87, 271
               

               Conread position:
               1-339
               

               Cow position:
               chrX:35612884-35612540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               232
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               87, 106
               

               Conread position:
               1-339
               

               Cow position:
               chrX:38051772-38051428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               87, 189
               

               Conread position:
               1-340
               

               Cow position:
               chrX:15007491-15007148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 186
               

               Conread position:
               1-342
               

               Cow position:
               chrX:14122091-14121744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               94, 28
               

               Conread position:
               1-342
               

               Cow position:
               chrX:17055229-17055577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               237
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-342
               

               Cow position:
               chrX:18656145-18655797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               235
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-342
               

               Cow position:
               chrX:20801437-20801774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               236
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               46, 113
               

               Conread position:
               1-342
               

               Cow position:
               chrX:25289019-25288671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 296
               

               Conread position:
               1-342
               

               Cow position:
               chrX:25575619-25575967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               28, 114
               

               Conread position:
               1-342
               

               Cow position:
               chrX:27627015-27627361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               238
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               89, 296
               

               Conread position:
               1-342
               

               Cow position:
               chrX:28513732-28514079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               232
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               93, 128
               

               Conread position:
               1-342
               

               Cow position:
               chrX:29903402-29903751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               232
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-342
               

               Cow position:
               chrX:30816609-30816261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               231
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               94, 271
               

               Conread position:
               1-342
               

               Cow position:
               chrX:32010691-32011039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               240
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               87, 286
               

               Conread position:
               1-343
               

               Cow position:
               chrX:5320058-5319707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-343
               

               Cow position:
               chrX:38227430-38227089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 200
               

               Conread position:
               1-344
               

               Cow position:
               chrX:13971567-13971218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               238
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               87, 338
               

               Conread position:
               1-344
               

               Cow position:
               chrX:25946182-25945828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               245
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               37, 275
               

               Conread position:
               1-345
               

               Cow position:
               chrX:31250052-31250392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 42
               

               Conread position:
               1-346
               

               Cow position:
               chrX:3361479-3361828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               239
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               87, 137
               

               Conread position:
               1-346
               

               Cow position:
               chrX:28024923-28025271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               93, 186
               

               Conread position:
               1-347
               

               Cow position:
               chrX:24509527-24509879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               240
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               89, 350
               

               Conread position:
               1-347
               

               Cow position:
               chrX:25232246-25232599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               241
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               97, 216
               

               Conread position:
               1-347
               

               Cow position:
               chrX:28058135-28057783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 350
               

               Conread position:
               1-348
               

               Cow position:
               chrX:7571566-7571914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 204
               

               Conread position:
               1-348
               

               Cow position:
               chrX:35609646-35609997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 211
               

               Conread position:
               1-350
               

               Cow position:
               chrX:35288320-35288664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               74, 174
               

               Conread position:
               1-351
               

               Cow position:
               chrX:16289902-16289547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               246
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               95, 270
               

               Conread position:
               1-351
               

               Cow position:
               chrX:34441787-34441441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               250, 127
               

               Conread position:
               1-352
               

               Cow position:
               chrX:18078250-18077892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 270
               

               Conread position:
               1-352
               

               Cow position:
               chrX:23572140-23571785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 325
               

               Conread position:
               1-352
               

               Cow position:
               chrX:47211190-47210835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               240
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               94, 272
               

               Conread position:
               1-353
               

               Cow position:
               chrX:7551135-7550781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               247
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               93, 130
               

               Conread position:
               1-353
               

               Cow position:
               chrX:11949833-11949486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 204
               

               Conread position:
               1-353
               

               Cow position:
               chrX:21833545-21833900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 270
               

               Conread position:
               1-353
               

               Cow position:
               chrX:41103448-41103805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 217
               

               Conread position:
               1-353
               

               Cow position:
               chrX:41156971-41157326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 270
               

               Conread position:
               1-354
               

               Cow position:
               chrX:30531370-30531011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               93, 30
               

               Conread position:
               1-359
               

               Cow position:
               chrX:39174553-39174192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               256
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               93, 130
               

               Conread position:
               1-368
               

               Cow position:
               chrX:40827087-40826727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               263
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               94, 180
               

               Conread position:
               1-369
               

               Cow position:
               chrX:878709-878355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               259
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               58, 128
               

               Conread position:
               1-369
               

               Cow position:
               chrX:10831852-10831465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 282
               

               Conread position:
               1-369
               

               Cow position:
               chrX:17271628-17271256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               251
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               94, 9
               

               Conread position:
               1-369
               

               Cow position:
               chrX:38218376-38218739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 129
               

               Conread position:
               1-369
               

               Cow position:
               chrX:41122732-41123087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               258
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               93, 130
               

               Conread position:
               1-369
               

               Cow position:
               chrX:42247516-42247157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               308, 103
               

               Conread position:
               1-370
               

               Cow position:
               chrX:22812722-22813094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 137
               

               Conread position:
               1-374
               

               Cow position:
               chrX:7742797-7742425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               251
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               87, 305
               

               Conread position:
               1-375
               

               Cow position:
               chrX:27516193-27516561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 211
               

               Conread position:
               1-375
               

               Cow position:
               chrX:36195752-36196133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               252
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-375
               

               Cow position:
               chrX:47967260-47967638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 229
               

               Conread position:
               1-385
               

               Cow position:
               chrX:3078927-3078544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               263
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               87, 177
               

               Conread position:
               1-385
               

               Cow position:
               chrX:5334159-5333778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               87, 72
               

               Conread position:
               1-385
               

               Cow position:
               chrX:11860582-11860198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 341
               

               Conread position:
               1-385
               

               Cow position:
               chrX:37958157-37958541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 341
               

               Conread position:
               1-392
               

               Cow position:
               chrX:6413706-6414102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               94, 176
               

               Conread position:
               1-432
               

               Cow position:
               chrX:10437991-10437579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 88
               

               Conread position:
               1-453
               

               Cow position:
               chrX:9154020-9154476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               2-108
               

               Cow position:
               chrX:11455408-11455302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               107
               

               Alignm identity:
               86
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-136
               

               Cow position:
               chrX:12008021-12007884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               2-137
               

               Cow position:
               chrX:20954265-20954404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               113
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               2-153
               

               Cow position:
               chrX:27117628-27117778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               92, 67
               

               Conread position:
               2-164
               

               Cow position:
               chrX:38067052-38066887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               2-195
               

               Cow position:
               chrX:23514810-23514614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               2-195
               

               Cow position:
               chrX:43114833-43115027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               38, 107
               

               Conread position:
               2-197
               

               Cow position:
               chrX:21495419-21495617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               2-203
               

               Cow position:
               chrX:32144502-32144298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               156
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               2-207
               

               Cow position:
               chrX:29723112-29723317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               166
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               92, 129
               

               Conread position:
               2-219
               

               Cow position:
               chrX:40591347-40591567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               165
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               2-253
               

               Cow position:
               chrX:40365134-40364878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               97, 61
               

               Conread position:
               2-254
               

               Cow position:
               chrX:25966718-25966950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               93, 136
               

               Conread position:
               2-257
               

               Cow position:
               chrX:4630029-4629770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               92, 12
               

               Conread position:
               2-257
               

               Cow position:
               chrX:46771311-46771053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 205
               

               Conread position:
               2-259
               

               Cow position:
               chrX:7755562-7755823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               2-283
               

               Cow position:
               chrX:28866328-28866058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 133
               

               Conread position:
               2-286
               

               Cow position:
               chrX:38072106-38071820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 82
               

               Conread position:
               2-301
               

               Cow position:
               chrX:32171221-32170928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               93, 188
               

               Conread position:
               2-311
               

               Cow position:
               chrX:46532859-46532533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 150
               

               Conread position:
               2-317
               

               Cow position:
               chrX:6655605-6655284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               221
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               94, 8
               

               Conread position:
               2-329
               

               Cow position:
               chrX:28847215-28846890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               257, 200
               

               Conread position:
               2-330
               

               Cow position:
               chrX:20038557-20038223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               234
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               92, 214
               

               Conread position:
               2-330
               

               Cow position:
               chrX:20878102-20877769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 269
               

               Conread position:
               2-330
               

               Cow position:
               chrX:27997311-27997642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               229
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               93, 137
               

               Conread position:
               2-342
               

               Cow position:
               chrX:15590211-15589867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               237
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               92, 208
               

               Conread position:
               2-367
               

               Cow position:
               chrX:42585404-42585055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               254
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               88, 36
               

               Conread position:
               2-375
               

               Cow position:
               chrX:47343953-47344327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 235
               

               Conread position:
               2-377
               

               Cow position:
               chrX:45501809-45502186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               99, 266
               

               Conread position:
               3-195
               

               Cow position:
               chrX:48243791-48243595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               5, 190
               

               Conread position:
               3-260
               

               Cow position:
               chrX:34840105-34839860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               90, 53
               

               Conread position:
               3-310
               

               Cow position:
               chrX:33803355-33803038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               10, 54
               

               Conread position:
               3-324
               

               Cow position:
               chrX:17743732-17744050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               96, 61
               

               Conread position:
               3-369
               

               Cow position:
               chrX:13785716-13785335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               267
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               107, 210
               

               Conread position:
               3-370
               

               Cow position:
               chrX:11718118-11717757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 128
               

               Conread position:
               4-259
               

               Cow position:
               chrX:23452935-23452676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               187
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               5-111
               

               Cow position:
               chrX:17010638-17010529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               91
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-133
               

               Cow position:
               chrX:34006977-34007108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               109
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-134
               

               Cow position:
               chrX:11461208-11461076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               5-136
               

               Cow position:
               chrX:2715286-2715420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-137
               

               Cow position:
               chrX:16222290-16222424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               112
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               90, 38
               

               Conread position:
               5-137
               

               Cow position:
               chrX:22521557-22521422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               108
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-137
               

               Cow position:
               chrX:22522167-22522032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               111
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-137
               

               Cow position:
               chrX:24975601-24975736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-137
               

               Cow position:
               chrX:28314089-28314224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-142
               

               Cow position:
               chrX:38225747-38225887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               5-168
               

               Cow position:
               chrX:34006478-34006311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               5-176
               

               Cow position:
               chrX:48423599-48423773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-195
               

               Cow position:
               chrX:389172-389362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               98, 74
               

               Conread position:
               5-195
               

               Cow position:
               chrX:11108463-11108270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               5-195
               

               Cow position:
               chrX:18684448-18684632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               5-195
               

               Cow position:
               chrX:20970588-20970780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               83, 137
               

               Conread position:
               5-195
               

               Cow position:
               chrX:24006158-24005973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               85, 122
               

               Conread position:
               5-195
               

               Cow position:
               chrX:25150857-25151052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               5-195
               

               Cow position:
               chrX:30139120-30138927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               5-197
               

               Cow position:
               chrX:2485967-2485772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-197
               

               Cow position:
               chrX:30338255-30338065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               42, 34
               

               Conread position:
               5-200
               

               Cow position:
               chrX:24467461-24467263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-203
               

               Cow position:
               chrX:1518775-1518574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-203
               

               Cow position:
               chrX:2499676-2499475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-203
               

               Cow position:
               chrX:3570115-3570316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               161
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               5-203
               

               Cow position:
               chrX:18794335-18794138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               46, 84
               

               Conread position:
               5-203
               

               Cow position:
               chrX:19162967-19162769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               89, 46
               

               Conread position:
               5-203
               

               Cow position:
               chrX:26617257-26617056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-203
               

               Cow position:
               chrX:30052805-30052604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-203
               

               Cow position:
               chrX:37079875-37079674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               156
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-203
               

               Cow position:
               chrX:39954874-39954673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-203
               

               Cow position:
               chrX:40322582-40322781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               86, 55
               

               Conread position:
               5-203
               

               Cow position:
               chrX:41106345-41106144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               89, 156
               

               Conread position:
               5-207
               

               Cow position:
               chrX:33003920-33004125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               83, 179
               

               Conread position:
               5-208
               

               Cow position:
               chrX:28588634-28588840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               157
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-210
               

               Cow position:
               chrX:40549288-40549498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               5-211
               

               Cow position:
               chrX:39556152-39555943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               5-219
               

               Cow position:
               chrX:7097122-7097338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               83, 97
               

               Conread position:
               5-219
               

               Cow position:
               chrX:10992282-10992499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-219
               

               Cow position:
               chrX:15620868-15620650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               5-219
               

               Cow position:
               chrX:22568353-22568138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               91, 34
               

               Conread position:
               5-222
               

               Cow position:
               chrX:36678005-36677786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               47, 74
               

               Conread position:
               5-228
               

               Cow position:
               chrX:15341374-15341146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               69, 127
               

               Conread position:
               5-230
               

               Cow position:
               chrX:6828799-6829028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               5-230
               

               Cow position:
               chrX:38331046-38331272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               83, 208
               

               Conread position:
               5-234
               

               Cow position:
               chrX:6454359-6454591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-237
               

               Cow position:
               chrX:47368582-47368350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               5-242
               

               Cow position:
               chrX:508492-508251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               86, 188
               

               Conread position:
               5-242
               

               Cow position:
               chrX:18896752-18896516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-248
               

               Cow position:
               chrX:37403359-37403112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-248
               

               Cow position:
               chrX:45467556-45467309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-253
               

               Cow position:
               chrX:27678017-27678264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               80, 109
               

               Conread position:
               5-254
               

               Cow position:
               chrX:5408719-5408971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               181
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               5-254
               

               Cow position:
               chrX:16735188-16735441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               5-254
               

               Cow position:
               chrX:18223077-18223329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               85, 134
               

               Conread position:
               5-254
               

               Cow position:
               chrX:24735607-24735855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               91, 31
               

               Conread position:
               5-254
               

               Cow position:
               chrX:29913003-29913256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               83, 236
               

               Conread position:
               5-254
               

               Cow position:
               chrX:36535071-36534818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-255
               

               Cow position:
               chrX:10528110-10527858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               90, 186
               

               Conread position:
               5-255
               

               Cow position:
               chrX:13069074-13068824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               90, 153
               

               Conread position:
               5-255
               

               Cow position:
               chrX:13089635-13089375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               90, 153
               

               Conread position:
               5-255
               

               Cow position:
               chrX:24447465-24447718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-256
               

               Cow position:
               chrX:5127587-5127831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               90, 43
               

               Conread position:
               5-256
               

               Cow position:
               chrX:25205374-25205636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               187
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-256
               

               Cow position:
               chrX:27486074-27486324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               52, 205
               

               Conread position:
               5-256
               

               Cow position:
               chrX:27761004-27761259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               90, 249
               

               Conread position:
               5-257
               

               Cow position:
               chrX:9299173-9298920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               89, 211
               

               Conread position:
               5-257
               

               Cow position:
               chrX:24169650-24169395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               88, 9
               

               Conread position:
               5-257
               

               Cow position:
               chrX:29010397-29010650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               81, 160
               

               Conread position:
               5-259
               

               Cow position:
               chrX:5112892-5112634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-259
               

               Cow position:
               chrX:6652408-6652150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-259
               

               Cow position:
               chrX:13686381-13686643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               83, 109
               

               Conread position:
               5-259
               

               Cow position:
               chrX:15346305-15346047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-259
               

               Cow position:
               chrX:15561151-15560892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-259
               

               Cow position:
               chrX:16046812-16047071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-259
               

               Cow position:
               chrX:24809306-24809049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               186
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               83, 163
               

               Conread position:
               5-259
               

               Cow position:
               chrX:26974574-26974832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-259
               

               Cow position:
               chrX:30196961-30197219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-259
               

               Cow position:
               chrX:30965765-30966023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-259
               

               Cow position:
               chrX:32331295-32331549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               83, 118
               

               Conread position:
               5-259
               

               Cow position:
               chrX:39548994-39549252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-259
               

               Cow position:
               chrX:48328723-48328465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               5-260
               

               Cow position:
               chrX:1655144-1655398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               80, 178
               

               Conread position:
               5-262
               

               Cow position:
               chrX:33172294-33172036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               89, 203
               

               Conread position:
               5-265
               

               Cow position:
               chrX:29877517-29877252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               191
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-268
               

               Cow position:
               chrX:47608078-47608345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               190
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-270
               

               Cow position:
               chrX:29864767-29864496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               90, 126
               

               Conread position:
               5-273
               

               Cow position:
               chrX:48490220-48489948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               127, 266
               

               Conread position:
               5-276
               

               Cow position:
               chrX:44851755-44852033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               91, 33
               

               Conread position:
               5-278
               

               Cow position:
               chrX:22567196-22567473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-279
               

               Cow position:
               chrX:30141661-30141376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               89, 273
               

               Conread position:
               5-282
               

               Cow position:
               chrX:16354684-16354407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               82, 110
               

               Conread position:
               5-285
               

               Cow position:
               chrX:2559296-2559016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               197
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               85, 141
               

               Conread position:
               5-285
               

               Cow position:
               chrX:2932056-2931771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               89, 83
               

               Conread position:
               5-285
               

               Cow position:
               chrX:5306263-5306547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-285
               

               Cow position:
               chrX:5423402-5423118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-285
               

               Cow position:
               chrX:18024704-18024987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               197
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               90, 5
               

               Conread position:
               5-285
               

               Cow position:
               chrX:37852803-37853079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               66, 83
               

               Conread position:
               5-285
               

               Cow position:
               chrX:39559988-39559705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 124
               

               Conread position:
               5-286
               

               Cow position:
               chrX:42855074-42855359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               5-286
               

               Cow position:
               chrX:44086968-44087254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-287
               

               Cow position:
               chrX:19674312-19674597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               90, 277
               

               Conread position:
               5-296
               

               Cow position:
               chrX:41198750-41199061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               66, 253
               

               Conread position:
               5-300
               

               Cow position:
               chrX:2151268-2150973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               83, 200
               

               Conread position:
               5-300
               

               Cow position:
               chrX:20032167-20031872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               90, 219
               

               Conread position:
               5-300
               

               Cow position:
               chrX:22613050-22613349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-300
               

               Cow position:
               chrX:26275803-26276102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               207
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               5-300
               

               Cow position:
               chrX:29066116-29066400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               90, 38
               

               Conread position:
               5-300
               

               Cow position:
               chrX:34519390-34519689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-300
               

               Cow position:
               chrX:36840531-36840834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               91, 139
               

               Conread position:
               5-300
               

               Cow position:
               chrX:42459836-42460143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               5-302
               

               Cow position:
               chrX:22578496-22578199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               247, 38
               

               Conread position:
               5-307
               

               Cow position:
               chrX:7118980-7118674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               186
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               90, 0
               
UCSC Genome Browser
               Conread position:
               5-309
               

               Cow position:
               chrX:21415752-21416065 (view  custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               89, 223
               
UCSC Genome Browser
               
               
               
Conread position: 5-309

               
               
               
Cow position: chrX:38967315-38967615 (view  custom track)

               
               
               
Alignm length: 311

               
               
               
Alignm identity: 237

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 38, 74
UCSC Genome Browser
               
               
               
Conread position: 5-310

               
               
               
Cow position: chrX:30950192-30950501 (view  custom track)

               
               
               
Alignm length: 310

               
               
               
Alignm identity: 188

               
               
               
Alignm E-value: 3.9937e-43

               
               
               
Alignm gaps (pig, cow): 90, 0

               
               
               Conread position:5-311
               
               
               Cow position:chrX:6372845-6373153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):83, 205

               
               
               Conread position:5-311
               
               
               Cow position:chrX:25458973-25458664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 266

               
               
               Conread position:5-311
               
               
               Cow position:chrX:29780409-29780714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):86, 180

               
               
               Conread position:5-317
               
               
               Cow position:chrX:12466159-12466476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 182

               
               
               Conread position:5-317
               
               
               Cow position:chrX:27095783-27096093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):89, 180

               
               
               Conread position:5-320
               
               
               Cow position:chrX:26531622-26531944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 205

               
               
               Conread position:5-323
               
               
               Cow position:chrX:3464412-3464089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):83, 172

               
               
               Conread position:5-324
               
               
               Cow position:chrX:3649144-3648829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):89, 83

               
               
               Conread position:5-324
               
               
               Cow position:chrX:8483754-8484068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:5-325
               
               
               Cow position:chrX:16529669-16529995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 205

               
               
               Conread position:5-328
               
               
               Cow position:chrX:23215771-23216101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:5-329
               
               
               Cow position:chrX:47318070-47318401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:1331596-1331931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):89, 270

               
               
               Conread position:5-330
               
               
               Cow position:chrX:1781569-1781902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:2274581-2274913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):83, 266

               
               
               Conread position:5-330
               
               
               Cow position:chrX:2417820-2417488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:2812745-2812416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:5-330
               
               
               Cow position:chrX:3387770-3388102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:4343413-4343745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):83, 137

               
               
               Conread position:5-330
               
               
               Cow position:chrX:4622290-4621958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:5280189-5279858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):83, 187

               
               
               Conread position:5-330
               
               
               Cow position:chrX:5406722-5407051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):81, 156

               
               
               Conread position:5-330
               
               
               Cow position:chrX:5599314-5598982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:5866810-5867141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):83, 184

               
               
               Conread position:5-330
               
               
               Cow position:chrX:6196090-6195758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:6566738-6567070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:7311657-7311989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:7444748-7445079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):83, 205

               
               
               Conread position:5-330
               
               
               Cow position:chrX:7509801-7510132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):83, 203

               
               
               Conread position:5-330
               
               
               Cow position:chrX:10351525-10351857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):90, 267

               
               
               Conread position:5-330
               
               
               Cow position:chrX:10444751-10444418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:10922907-10922575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:10932336-10932668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):85, 266

               
               
               Conread position:5-330
               
               
               Cow position:chrX:11145674-11145342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):83, 138

               
               
               Conread position:5-330
               
               
               Cow position:chrX:11663842-11664174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:11725603-11725267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:12001483-12001151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:12776322-12775991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):83, 229

               
               
               Conread position:5-330
               
               
               Cow position:chrX:13196307-13195975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:13648120-13647793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 192

               
               
               Conread position:5-330
               
               
               Cow position:chrX:14134139-14134471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:14598509-14598841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:14781681-14781349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:14801154-14800822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):59, 206

               
               
               Conread position:5-330
               
               
               Cow position:chrX:14846410-14846078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 266

               
               
               Conread position:5-330
               
               
               Cow position:chrX:15172863-15172537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):247, 76

               
               
               Conread position:5-330
               
               
               Cow position:chrX:17783163-17783495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:17995123-17995455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:19022645-19022313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:19196854-19196522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):89, 82

               
               
               Conread position:5-330
               
               
               Cow position:chrX:19473497-19473164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:20098986-20099318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:20321103-20320772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):85, 133

               
               
               Conread position:5-330
               
               
               Cow position:chrX:20617133-20616801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:20742650-20742982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:21768468-21768799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):90, 278

               
               
               Conread position:5-330
               
               
               Cow position:chrX:22077991-22078323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:23047444-23047774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):90, 208

               
               
               Conread position:5-330
               
               
               Cow position:chrX:24413694-24414026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 83

               
               
               Conread position:5-330
               
               
               Cow position:chrX:24769196-24768868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):83, 125

               
               
               Conread position:5-330
               
               
               Cow position:chrX:24966933-24967265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:24969152-24968820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:25276835-25276503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 267

               
               
               Conread position:5-330
               
               
               Cow position:chrX:26759905-26759573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):90, 292

               
               
               Conread position:5-330
               
               
               Cow position:chrX:27404281-27403950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):90, 56

               
               
               Conread position:5-330
               
               
               Cow position:chrX:29169672-29169338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:29508447-29508773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):247, 83

               
               
               Conread position:5-330
               
               
               Cow position:chrX:30172046-30171714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:30228446-30228119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:5-330
               
               
               Cow position:chrX:30752438-30752770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:30822248-30822580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:30899724-30899391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:31449958-31449627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):89, 266

               
               
               Conread position:5-330
               
               
               Cow position:chrX:31605348-31605680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:34095225-34095557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:34285400-34285067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:34333536-34333204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:34413440-34413772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:34761730-34762062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):90, 292

               
               
               Conread position:5-330
               
               
               Cow position:chrX:36730048-36730382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):83, 264

               
               
               Conread position:5-330
               
               
               Cow position:chrX:37497783-37497451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:37816252-37816584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:38230603-38230271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:38442626-38442958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:39731177-39731509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:42120967-42121299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:42591389-42591723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:43511080-43511415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 295

               
               
               Conread position:5-330
               
               
               Cow position:chrX:44387654-44387981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):244, 82

               
               
               Conread position:5-330
               
               
               Cow position:chrX:44557743-44558075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):90, 83

               
               
               Conread position:5-330
               
               
               Cow position:chrX:45237130-45237462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:45903842-45904174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:46297324-46297656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):83, 237

               
               
               Conread position:5-330
               
               
               Cow position:chrX:47386267-47385938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:5-330
               
               
               Cow position:chrX:48165187-48165519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):90, 144

               
               
               Conread position:5-333
               
               
               Cow position:chrX:30199328-30198993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):90, 292

               
               
               Conread position:5-336
               
               
               Cow position:chrX:15091102-15090768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:5-339
               
               
               Cow position:chrX:14409723-14409380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):90, 278

               
               
               Conread position:5-342
               
               
               Cow position:chrX:671345-671001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-342
               
               
               Cow position:chrX:5739549-5739205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-342
               
               
               Cow position:chrX:5871977-5872322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-342
               
               
               Cow position:chrX:8434543-8434199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-342
               
               
               Cow position:chrX:8641452-8641795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):83, 205

               
               
               Conread position:5-342
               
               
               Cow position:chrX:9168950-9168608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):85, 327

               
               
               Conread position:5-342
               
               
               Cow position:chrX:10915702-10916054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:5-342
               
               
               Cow position:chrX:11975823-11975487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):89, 138

               
               
               Conread position:5-342
               
               
               Cow position:chrX:12145759-12146102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 98

               
               
               Conread position:5-342
               
               
               Cow position:chrX:16279313-16279657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-342
               
               
               Cow position:chrX:30686932-30686585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-342
               
               
               Cow position:chrX:30981501-30981157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:5-342
               
               
               Cow position:chrX:37764533-37764189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):90, 267

               
               
               Conread position:5-342
               
               
               Cow position:chrX:43767873-43767529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-342
               
               
               Cow position:chrX:46579191-46578847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:5-343
               
               
               Cow position:chrX:36373208-36373569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):83, 308

               
               
               Conread position:5-346
               
               
               Cow position:chrX:9227320-9226972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 130

               
               
               Conread position:5-346
               
               
               Cow position:chrX:12458362-12458710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:5-347
               
               
               Cow position:chrX:361789-361441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):85, 346

               
               
               Conread position:5-347
               
               
               Cow position:chrX:13447934-13448282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):90, 346

               
               
               Conread position:5-347
               
               
               Cow position:chrX:32039179-32038831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 346

               
               
               Conread position:5-354
               
               
               Cow position:chrX:5123697-5123344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 334

               
               
               Conread position:5-354
               
               
               Cow position:chrX:8530204-8530557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):83, 334

               
               
               Conread position:5-354
               
               
               Cow position:chrX:10428204-10428556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 77

               
               
               Conread position:5-354
               
               
               Cow position:chrX:14462977-14463330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):90, 334

               
               
               Conread position:5-354
               
               
               Cow position:chrX:43979282-43979637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):90, 294

               
               
               Conread position:5-354
               
               
               Cow position:chrX:44980373-44980017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):89, 203

               
               
               Conread position:5-361
               
               
               Cow position:chrX:2104069-2104425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):83, 200

               
               
               Conread position:5-374
               
               
               Cow position:chrX:13396588-13396219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):90, 326

               
               
               Conread position:5-384
               
               
               Cow position:chrX:5646440-5646061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):90, 334

               
               
               Conread position:5-384
               
               
               Cow position:chrX:22608928-22608549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 337

               
               
               Conread position:5-384
               
               
               Cow position:chrX:30538488-30538109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 337

               
               
               Conread position:5-385
               
               
               Cow position:chrX:1975933-1975554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):83, 336

               
               
               Conread position:5-385
               
               
               Cow position:chrX:2362163-2362543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):90, 267

               
               
               Conread position:5-385
               
               
               Cow position:chrX:3157282-3157662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):90, 337

               
               
               Conread position:5-385
               
               
               Cow position:chrX:7486528-7486908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):85, 334

               
               
               Conread position:5-385
               
               
               Cow position:chrX:9018639-9018259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 337

               
               
               Conread position:5-385
               
               
               Cow position:chrX:9085669-9085290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 267

               
               
               Conread position:5-385
               
               
               Cow position:chrX:11358401-11358015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 378

               
               
               Conread position:5-385
               
               
               Cow position:chrX:13385071-13385452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:263
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):83, 333

               
               
               Conread position:5-385
               
               
               Cow position:chrX:15781245-15781625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):85, 337

               
               
               Conread position:5-385
               
               
               Cow position:chrX:18451415-18451047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):83, 202

               
               
               Conread position:5-385
               
               
               Cow position:chrX:19495296-19494916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 337

               
               
               Conread position:5-385
               
               
               Cow position:chrX:19774816-19774436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):83, 267

               
               
               Conread position:5-385
               
               
               Cow position:chrX:22557165-22557545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):90, 337

               
               
               Conread position:5-385
               
               
               Cow position:chrX:23139977-23140353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):275, 288

               
               
               Conread position:5-385
               
               
               Cow position:chrX:23235494-23235874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 337

               
               
               Conread position:5-385
               
               
               Cow position:chrX:24758033-24757653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):90, 266

               
               
               Conread position:5-385
               
               
               Cow position:chrX:28555771-28555391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):85, 337

               
               
               Conread position:5-385
               
               
               Cow position:chrX:30940845-30941227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):83, 333

               
               
               Conread position:5-385
               
               
               Cow position:chrX:36479596-36479976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):83, 337

               
               
               Conread position:5-385
               
               
               Cow position:chrX:36820568-36820188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):83, 337

               
               
               Conread position:5-385
               
               
               Cow position:chrX:37061127-37060747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):83, 337

               
               
               Conread position:5-385
               
               
               Cow position:chrX:37772770-37772389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):90, 338

               
               
               Conread position:5-395
               
               
               Cow position:chrX:27594516-27594127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):96, 332

               
               
               Conread position:5-491
               
               
               Cow position:chrX:17980259-17980754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):90, 333

               
               
               Conread position:5-698
               
               
               Cow position:chrX:30825312-30826008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:6-126
               
               
               Cow position:chrX:37905684-37905807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:6-176
               
               
               Cow position:chrX:16040015-16039842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:6-195
               
               
               Cow position:chrX:12021939-12022128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):82, 177

               
               
               Conread position:6-195
               
               
               Cow position:chrX:28516169-28515990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:6-200
               
               
               Cow position:chrX:27240401-27240600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:6-203
               
               
               Cow position:chrX:39288503-39288303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:6-207
               
               
               Cow position:chrX:3207897-3207693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:6-208
               
               
               Cow position:chrX:19741838-19741633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):73, 180

               
               
               Conread position:6-216
               
               
               Cow position:chrX:2902293-2902498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:6-231
               
               
               Cow position:chrX:19320255-19320479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):88, 204

               
               
               Conread position:6-235
               
               
               Cow position:chrX:37105835-37106071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:6-242
               
               
               Cow position:chrX:304859-305093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 88

               
               
               Conread position:6-257
               
               
               Cow position:chrX:41049778-41050034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):82, 175

               
               
               Conread position:6-259
               
               
               Cow position:chrX:37148200-37148452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):82, 146

               
               
               Conread position:6-285
               
               
               Cow position:chrX:9011992-9012275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):82, 243

               
               
               Conread position:6-288
               
               
               Cow position:chrX:48370761-48371046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 221

               
               
               Conread position:6-300
               
               
               Cow position:chrX:5289022-5288724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:6-300
               
               
               Cow position:chrX:11672446-11672744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:6-330
               
               
               Cow position:chrX:14458502-14458178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):84, 203

               
               
               Conread position:6-330
               
               
               Cow position:chrX:15438984-15438657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):88, 82

               
               
               Conread position:6-330
               
               
               Cow position:chrX:29226141-29226470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 266

               
               
               Conread position:6-342
               
               
               Cow position:chrX:15577976-15577633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:6-342
               
               
               Cow position:chrX:22772320-22772663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):90, 137

               
               
               Conread position:6-350
               
               
               Cow position:chrX:48205248-48204903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):82, 250

               
               
               Conread position:6-354
               
               
               Cow position:chrX:8591205-8591562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):89, 338

               
               
               Conread position:6-385
               
               
               Cow position:chrX:17605896-17605517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):89, 333

               
               
               Conread position:7-118
               
               
               Cow position:chrX:13404679-13404565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:7-121
               
               
               Cow position:chrX:23091472-23091586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-123
               
               
               Cow position:chrX:6487666-6487787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:7-129
               
               
               Cow position:chrX:43730526-43730401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:7-137
               
               
               Cow position:chrX:22284180-22284316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:7-137
               
               
               Cow position:chrX:34222415-34222548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:7-140
               
               
               Cow position:chrX:11583478-11583344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:7-153
               
               
               Cow position:chrX:40542465-40542614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:7-170
               
               
               Cow position:chrX:47965319-47965153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:7-175
               
               
               Cow position:chrX:11614387-11614557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:142
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):87, 168

               
               
               Conread position:7-186
               
               
               Cow position:chrX:21319364-21319537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 48

               
               
               Conread position:7-195
               
               
               Cow position:chrX:43006952-43006760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:7-200
               
               
               Cow position:chrX:19771951-19771765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):187, 92

               
               
               Conread position:7-200
               
               
               Cow position:chrX:30784531-30784726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 80

               
               
               Conread position:7-203
               
               
               Cow position:chrX:3808072-3808273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:7-203
               
               
               Cow position:chrX:4664951-4664752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:7-203
               
               
               Cow position:chrX:27450364-27450156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:7-205
               
               
               Cow position:chrX:22325742-22325943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:7-208
               
               
               Cow position:chrX:5640953-5640763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:7-211
               
               
               Cow position:chrX:19595937-19596146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 167

               
               
               Conread position:7-215
               
               
               Cow position:chrX:37544614-37544824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:7-222
               
               
               Cow position:chrX:5676031-5675818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:7-222
               
               
               Cow position:chrX:28646319-28646104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):87, 107

               
               
               Conread position:7-228
               
               
               Cow position:chrX:12290403-12290626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):89, 57

               
               
               Conread position:7-231
               
               
               Cow position:chrX:10415859-10415632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):88, 22

               
               
               Conread position:7-246
               
               
               Cow position:chrX:39187700-39187458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 9

               
               
               Conread position:7-249
               
               
               Cow position:chrX:32871120-32870876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):88, 158

               
               
               Conread position:7-250
               
               
               Cow position:chrX:9346811-9347052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:7-253
               
               
               Cow position:chrX:26878333-26878580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 131

               
               
               Conread position:7-254
               
               
               Cow position:chrX:529469-529713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 124

               
               
               Conread position:7-254
               
               
               Cow position:chrX:7809337-7809086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 142

               
               
               Conread position:7-254
               
               
               Cow position:chrX:12852843-12852594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):87, 124

               
               
               Conread position:7-255
               
               
               Cow position:chrX:6906150-6905902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 125

               
               
               Conread position:7-255
               
               
               Cow position:chrX:17282323-17282072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 190

               
               
               Conread position:7-256
               
               
               Cow position:chrX:43648078-43647829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):87, 175

               
               
               Conread position:7-256
               
               
               Cow position:chrX:46448162-46447914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 71

               
               
               Conread position:7-257
               
               
               Cow position:chrX:5856846-5856600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 124

               
               
               Conread position:7-257
               
               
               Cow position:chrX:7381990-7382238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:7-257
               
               
               Cow position:chrX:22873063-22873317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:7-257
               
               
               Cow position:chrX:37299258-37299515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:7-257
               
               
               Cow position:chrX:44192775-44192536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):84, 48

               
               
               Conread position:7-265
               
               
               Cow position:chrX:44019369-44019626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 116

               
               
               Conread position:7-266
               
               
               Cow position:chrX:40581658-40581915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):62, 72

               
               
               Conread position:7-270
               
               
               Cow position:chrX:20504433-20504684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:7-271
               
               
               Cow position:chrX:11981787-11982062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):87, 141

               
               
               Conread position:7-272
               
               
               Cow position:chrX:2300597-2300857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):85, 200

               
               
               Conread position:7-280
               
               
               Cow position:chrX:24317732-24318003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):87, 116

               
               
               Conread position:7-285
               
               
               Cow position:chrX:47170506-47170788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):89, 264

               
               
               Conread position:7-286
               
               
               Cow position:chrX:501913-501636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):245, 16

               
               
               Conread position:7-286
               
               
               Cow position:chrX:37072072-37072352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):81, 124

               
               
               Conread position:7-296
               
               
               Cow position:chrX:26619695-26619407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:7-298
               
               
               Cow position:chrX:42470271-42469986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 194

               
               
               Conread position:7-300
               
               
               Cow position:chrX:29942817-29943114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):81, 203

               
               
               Conread position:7-301
               
               
               Cow position:chrX:35937403-35937121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:7-307
               
               
               Cow position:chrX:15596711-15597005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 68

               
               
               Conread position:7-309
               
               
               Cow position:chrX:151567-151872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 176

               
               
               Conread position:7-309
               
               
               Cow position:chrX:3653431-3653726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:7-309
               
               
               Cow position:chrX:3654274-3654575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):257, 81

               
               
               Conread position:7-309
               
               
               Cow position:chrX:15147517-15147220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 27

               
               
               Conread position:7-309
               
               
               Cow position:chrX:21592952-21593255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 0

               
               
               Conread position:7-309
               
               
               Cow position:chrX:31489178-31489487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 144

               
               
               Conread position:7-309
               
               
               Cow position:chrX:38007102-38006797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 248

               
               
               Conread position:7-309
               
               
               Cow position:chrX:42086528-42086824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:7-310
               
               
               Cow position:chrX:36778071-36778380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:7-316
               
               
               Cow position:chrX:4633185-4632874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 70

               
               
               Conread position:7-317
               
               
               Cow position:chrX:7645924-7646231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 200

               
               
               Conread position:7-318
               
               
               Cow position:chrX:7277594-7277892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:7-318
               
               
               Cow position:chrX:12115707-12116025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 92

               
               
               Conread position:7-318
               
               
               Cow position:chrX:20697937-20697628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 98

               
               
               Conread position:7-318
               
               
               Cow position:chrX:20945234-20945541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):87, 165

               
               
               Conread position:7-318
               
               
               Cow position:chrX:40269142-40269467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 272

               
               
               Conread position:7-318
               
               
               Cow position:chrX:41743579-41743891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 132

               
               
               Conread position:7-324
               
               
               Cow position:chrX:37843386-37843706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 206

               
               
               Conread position:7-330
               
               
               Cow position:chrX:27422615-27422286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):81, 131

               
               
               Conread position:7-330
               
               
               Cow position:chrX:44168643-44168313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:7-330
               
               
               Cow position:chrX:45932670-45933000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):86, 264

               
               
               Conread position:7-333
               
               
               Cow position:chrX:32128328-32127996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 146

               
               
               Conread position:7-340
               
               
               Cow position:chrX:42994280-42994614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 173

               
               
               Conread position:7-341
               
               
               Cow position:chrX:47481466-47481804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):86, 48

               
               
               Conread position:7-345
               
               
               Cow position:chrX:6234768-6234446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:7-346
               
               
               Cow position:chrX:161094-161418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):87, 144

               
               
               Conread position:7-347
               
               
               Cow position:chrX:2786880-2786549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:7-351
               
               
               Cow position:chrX:34564966-34565293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):302, 138

               
               
               Conread position:7-360
               
               
               Cow position:chrX:34554401-34554746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):88, 52

               
               
               Conread position:7-363
               
               
               Cow position:chrX:40558010-40557652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 190

               
               
               Conread position:7-369
               
               
               Cow position:chrX:1616385-1616016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 266

               
               
               Conread position:7-373
               
               
               Cow position:chrX:34532197-34532557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 121

               
               
               Conread position:7-375
               
               
               Cow position:chrX:11844572-11844210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 128

               
               
               Conread position:7-375
               
               
               Cow position:chrX:14599202-14599568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 29

               
               
               Conread position:7-385
               
               
               Cow position:chrX:35803480-35803864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 276

               
               
               Conread position:8-248
               
               
               Cow position:chrX:9403777-9404027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:8-256
               
               
               Cow position:chrX:18990132-18989882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):87, 6

               
               
               Conread position:8-256
               
               
               Cow position:chrX:38667966-38667704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):86, 6

               
               
               Conread position:8-257
               
               
               Cow position:chrX:7341476-7341732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 6

               
               
               Conread position:8-266
               
               
               Cow position:chrX:25329680-25329938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:9-123
               
               
               Cow position:chrX:30093696-30093582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-142
               
               
               Cow position:chrX:35025469-35025605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:9-160
               
               
               Cow position:chrX:30337227-30337382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:9-256
               
               
               Cow position:chrX:2737950-2738190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 54

               
               
               Conread position:9-265
               
               
               Cow position:chrX:12640969-12641213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):121, 6

               
               
               Conread position:9-290
               
               
               Cow position:chrX:9970598-9970869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):259, 91

               
               
               Conread position:9-309
               
               
               Cow position:chrX:42587761-42587461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):86, 178

               
               
               Conread position:9-328
               
               
               Cow position:chrX:24105294-24105613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 204

               
               
               Conread position:10-116
               
               
               Cow position:chrX:12671818-12671709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:10-192
               
               
               Cow position:chrX:20976391-20976211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:10-197
               
               
               Cow position:chrX:45421004-45420814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:10-200
               
               
               Cow position:chrX:12096578-12096386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):84, 121

               
               
               Conread position:10-203
               
               
               Cow position:chrX:26754960-26754767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-228
               
               
               Cow position:chrX:9651376-9651156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):85, 99

               
               
               Conread position:10-254
               
               
               Cow position:chrX:24231450-24231215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:10-254
               
               
               Cow position:chrX:29049644-29049876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:10-255
               
               
               Cow position:chrX:12360558-12360806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:10-255
               
               
               Cow position:chrX:34009419-34009663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 139

               
               
               Conread position:10-256
               
               
               Cow position:chrX:25924868-25924619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):78, 207

               
               
               Conread position:10-256
               
               
               Cow position:chrX:30919725-30919474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):58, 213

               
               
               Conread position:10-256
               
               
               Cow position:chrX:44930303-44930553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:10-257
               
               
               Cow position:chrX:14908686-14908933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:10-272
               
               
               Cow position:chrX:45430349-45430086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):85, 201

               
               
               Conread position:10-286
               
               
               Cow position:chrX:11082945-11082670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 122

               
               
               Conread position:10-286
               
               
               Cow position:chrX:26626016-26625726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 256

               
               
               Conread position:10-300
               
               
               Cow position:chrX:24482702-24482410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):85, 197

               
               
               Conread position:10-309
               
               
               Cow position:chrX:2425453-2425150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 261

               
               
               Conread position:10-309
               
               
               Cow position:chrX:18999567-18999856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):85, 121

               
               
               Conread position:10-309
               
               
               Cow position:chrX:38094856-38094554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 121

               
               
               Conread position:10-311
               
               
               Cow position:chrX:17497765-17498053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 195

               
               
               Conread position:10-311
               
               
               Cow position:chrX:28097799-28098080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:10-317
               
               
               Cow position:chrX:3405686-3405383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):78, 123

               
               
               Conread position:10-317
               
               
               Cow position:chrX:10306342-10306652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 197

               
               
               Conread position:10-318
               
               
               Cow position:chrX:42171627-42171317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 119

               
               
               Conread position:10-318
               
               
               Cow position:chrX:44054474-44054786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 96

               
               
               Conread position:10-333
               
               
               Cow position:chrX:30543613-30543294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:10-369
               
               
               Cow position:chrX:10412318-10411961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 135

               
               
               Conread position:10-372
               
               
               Cow position:chrX:31949261-31948907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 30

               
               
               Conread position:11-104
               
               
               Cow position:chrX:29602377-29602283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:11-118
               
               
               Cow position:chrX:13266154-13266044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:11-141
               
               
               Cow position:chrX:19291792-19291921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 62

               
               
               Conread position:11-166
               
               
               Cow position:chrX:7573049-7573207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:11-195
               
               
               Cow position:chrX:8103423-8103236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:11-203
               
               
               Cow position:chrX:47379797-47379603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):82, 141

               
               
               Conread position:11-211
               
               
               Cow position:chrX:31260376-31260180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 48

               
               
               Conread position:11-220
               
               
               Cow position:chrX:30060861-30060649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:11-221
               
               
               Cow position:chrX:32182360-32182144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):85, 63

               
               
               Conread position:11-222
               
               
               Cow position:chrX:26754115-26753901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:11-242
               
               
               Cow position:chrX:23932567-23932335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):85, 8

               
               
               Conread position:11-242
               
               
               Cow position:chrX:31777767-31777530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):123, 212

               
               
               Conread position:11-255
               
               
               Cow position:chrX:48227948-48227700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 207

               
               
               Conread position:11-265
               
               
               Cow position:chrX:26883479-26883208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 216

               
               
               Conread position:11-266
               
               
               Cow position:chrX:1978166-1978439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:11-268
               
               
               Cow position:chrX:42507974-42507720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 0

               
               
               Conread position:11-286
               
               
               Cow position:chrX:23583228-23583506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 231

               
               
               Conread position:11-309
               
               
               Cow position:chrX:23386869-23386575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):83, 120

               
               
               Conread position:11-317
               
               
               Cow position:chrX:37489388-37489701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):99, 209

               
               
               Conread position:11-318
               
               
               Cow position:chrX:28134019-28134325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 118

               
               
               Conread position:11-318
               
               
               Cow position:chrX:34454344-34454644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):84, 35

               
               
               Conread position:11-323
               
               
               Cow position:chrX:29083795-29084109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):241, 124

               
               
               Conread position:11-333
               
               
               Cow position:chrX:5638498-5638175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 73

               
               
               Conread position:11-342
               
               
               Cow position:chrX:29289246-29289583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 260

               
               
               Conread position:11-346
               
               
               Cow position:chrX:35681005-35681348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):84, 185

               
               
               Conread position:11-352
               
               
               Cow position:chrX:23396276-23396616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):83, 120

               
               
               Conread position:11-363
               
               
               Cow position:chrX:20340221-20339865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 181

               
               
               Conread position:12-178
               
               
               Cow position:chrX:17978546-17978707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:12-195
               
               
               Cow position:chrX:28666299-28666113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:12-196
               
               
               Cow position:chrX:2247662-2247476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 160

               
               
               Conread position:12-201
               
               
               Cow position:chrX:19540677-19540485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:12-207
               
               
               Cow position:chrX:11904654-11904456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:12-207
               
               
               Cow position:chrX:33837259-33837453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:12-207
               
               
               Cow position:chrX:42084679-42084876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):5, 107

               
               
               Conread position:12-208
               
               
               Cow position:chrX:3793920-3794119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 150

               
               
               Conread position:12-208
               
               
               Cow position:chrX:13138543-13138341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:12-214
               
               
               Cow position:chrX:17909019-17908823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:12-215
               
               
               Cow position:chrX:27419311-27419105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 104

               
               
               Conread position:12-242
               
               
               Cow position:chrX:34435378-34435146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:12-257
               
               
               Cow position:chrX:25302081-25301836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:12-280
               
               
               Cow position:chrX:16783165-16783430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):76, 125

               
               
               Conread position:12-385
               
               
               Cow position:chrX:29844805-29844432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):83, 330

               
               
               Conread position:13-195
               
               
               Cow position:chrX:23034567-23034753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 117

               
               
               Conread position:13-195
               
               
               Cow position:chrX:32214799-32214614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:13-195
               
               
               Cow position:chrX:35833082-35833266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 90

               
               
               Conread position:13-195
               
               
               Cow position:chrX:37405634-37405812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:13-206
               
               
               Cow position:chrX:11917058-11917250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 37

               
               
               Conread position:13-207
               
               
               Cow position:chrX:17082734-17082538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 9

               
               
               Conread position:13-207
               
               
               Cow position:chrX:26289011-26288816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):75, 170

               
               
               Conread position:13-207
               
               
               Cow position:chrX:27950053-27950247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-207
               
               
               Cow position:chrX:48247161-48246968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 50

               
               
               Conread position:13-221
               
               
               Cow position:chrX:20382859-20382663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:13-222
               
               
               Cow position:chrX:20957693-20957897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:13-234
               
               
               Cow position:chrX:9439197-9439421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 155

               
               
               Conread position:13-236
               
               
               Cow position:chrX:12110981-12110757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):82, 45

               
               
               Conread position:13-236
               
               
               Cow position:chrX:31839181-31839407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:13-254
               
               
               Cow position:chrX:21217915-21217678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:13-255
               
               
               Cow position:chrX:8661433-8661675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):81, 129

               
               
               Conread position:13-255
               
               
               Cow position:chrX:18293606-18293843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):24, 77

               
               
               Conread position:13-255
               
               
               Cow position:chrX:20653065-20653312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):86, 216

               
               
               Conread position:13-255
               
               
               Cow position:chrX:27323184-27322955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:13-256
               
               
               Cow position:chrX:37377591-37377348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:13-256
               
               
               Cow position:chrX:40142522-40142283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:13-256
               
               
               Cow position:chrX:40515575-40515808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:13-257
               
               
               Cow position:chrX:6659047-6659294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:13-266
               
               
               Cow position:chrX:22329898-22329648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:13-297
               
               
               Cow position:chrX:15139876-15139590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):50, 140

               
               
               Conread position:13-298
               
               
               Cow position:chrX:17964843-17964562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):243, 81

               
               
               Conread position:13-301
               
               
               Cow position:chrX:24424720-24424429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):82, 56

               
               
               Conread position:13-303
               
               
               Cow position:chrX:24200870-24201148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):245, 81

               
               
               Conread position:13-306
               
               
               Cow position:chrX:14884290-14883994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:13-309
               
               
               Cow position:chrX:7508799-7509109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):86, 17

               
               
               Conread position:13-317
               
               
               Cow position:chrX:27442880-27442577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 146

               
               
               Conread position:13-318
               
               
               Cow position:chrX:13868369-13868682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 115

               
               
               Conread position:13-330
               
               
               Cow position:chrX:12850804-12851128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:13-342
               
               
               Cow position:chrX:16074248-16074584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):82, 259

               
               
               Conread position:13-346
               
               
               Cow position:chrX:34401670-34402007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 52

               
               
               Conread position:13-350
               
               
               Cow position:chrX:11674730-11675072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):82, 207

               
               
               Conread position:13-369
               
               
               Cow position:chrX:13912751-13913095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):79, 201

               
               
               Conread position:13-410
               
               
               Cow position:chrX:34192353-34192735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 62

               
               
               Conread position:14-147
               
               
               Cow position:chrX:10256469-10256335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 45

               
               
               Conread position:14-176
               
               
               Cow position:chrX:2079569-2079398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:14-203
               
               
               Cow position:chrX:19847311-19847118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:14-211
               
               
               Cow position:chrX:33205319-33205119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:14-245
               
               
               Cow position:chrX:23080966-23081196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:14-255
               
               
               Cow position:chrX:48160803-48160569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):153, 122

               
               
               Conread position:14-256
               
               
               Cow position:chrX:24827012-24827245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):212, 81

               
               
               Conread position:14-330
               
               
               Cow position:chrX:43527176-43527501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 199

               
               
               Conread position:14-333
               
               
               Cow position:chrX:25337850-25338179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:14-345
               
               
               Cow position:chrX:8796924-8797260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:14-347
               
               
               Cow position:chrX:48248496-48248832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):81, 201

               
               
               Conread position:14-350
               
               
               Cow position:chrX:7695437-7695761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:15-245
               
               
               Cow position:chrX:43789179-43788951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:15-316
               
               
               Cow position:chrX:15545571-15545869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 122

               
               
               Conread position:15-330
               
               
               Cow position:chrX:29356261-29356583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:15-334
               
               
               Cow position:chrX:26492676-26493002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:15-347
               
               
               Cow position:chrX:15008758-15008422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):80, 257

               
               
               Conread position:16-195
               
               
               Cow position:chrX:23876444-23876261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:16-207
               
               
               Cow position:chrX:31955569-31955377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:16-208
               
               
               Cow position:chrX:15154668-15154863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 156

               
               
               Conread position:16-234
               
               
               Cow position:chrX:37575991-37576211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):72, 195

               
               
               Conread position:16-242
               
               
               Cow position:chrX:29024124-29024350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 146

               
               
               Conread position:16-250
               
               
               Cow position:chrX:36364893-36365131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:16-256
               
               
               Cow position:chrX:25848590-25848834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 124

               
               
               Conread position:16-256
               
               
               Cow position:chrX:27458930-27459175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):78, 195

               
               
               Conread position:17-137
               
               
               Cow position:chrX:10348158-10348035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:17-250
               
               
               Cow position:chrX:33822780-33823011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):78, 41

               
               
               Conread position:17-256
               
               
               Cow position:chrX:14262155-14261908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:17-259
               
               
               Cow position:chrX:11373330-11373087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 135

               
               
               Conread position:17-279
               
               
               Cow position:chrX:28632802-28632546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):78, 167

               
               
               Conread position:17-309
               
               
               Cow position:chrX:36692911-36693203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):78, 196

               
               
               Conread position:18-272
               
               
               Cow position:chrX:21063963-21064216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):77, 162

               
               
               Conread position:18-330
               
               
               Cow position:chrX:38102769-38102451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):20, 115

               
               
               Conread position:19-176
               
               
               Cow position:chrX:9044178-9044020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 59

               
               
               Conread position:19-176
               
               
               Cow position:chrX:36311277-36311433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:19-300
               
               
               Cow position:chrX:9161266-9161543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:19-384
               
               
               Cow position:chrX:27469976-27469611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):76, 323

               
               
               Conread position:20-138
               
               
               Cow position:chrX:14018806-14018926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:20-278
               
               
               Cow position:chrX:42779446-42779185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:21-207
               
               
               Cow position:chrX:33615085-33615274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:21-269
               
               
               Cow position:chrX:6012427-6012177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 215

               
               
               Conread position:21-269
               
               
               Cow position:chrX:40106006-40105763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):70, 117

               
               
               Conread position:21-296
               
               
               Cow position:chrX:34990721-34990989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):73, 128

               
               
               Conread position:21-330
               
               
               Cow position:chrX:828572-828883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):74, 61

               
               
               Conread position:21-362
               
               
               Cow position:chrX:14924680-14925026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 140

               
               
               Conread position:22-242
               
               
               Cow position:chrX:6629379-6629600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 74

               
               
               Conread position:22-351
               
               
               Cow position:chrX:28157168-28157507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:22-375
               
               
               Cow position:chrX:47873660-47873305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):71, 143

               
               
               Conread position:22-385
               
               
               Cow position:chrX:3658373-3658010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):73, 320

               
               
               Conread position:23-223
               
               
               Cow position:chrX:18647585-18647392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:23-256
               
               
               Cow position:chrX:12826429-12826665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:23-351
               
               
               Cow position:chrX:33639650-33639985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:24-176
               
               
               Cow position:chrX:28787050-28787201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:24-197
               
               
               Cow position:chrX:616720-616547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:142
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:24-255
               
               
               Cow position:chrX:20376653-20376878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:24-318
               
               
               Cow position:chrX:30162680-30162976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):70, 105

               
               
               Conread position:24-346
               
               
               Cow position:chrX:41790757-41790437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):70, 104

               
               
               Conread position:24-385
               
               
               Cow position:chrX:39667510-39667149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):71, 318

               
               
               Conread position:25-318
               
               
               Cow position:chrX:28845528-28845810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:26-207
               
               
               Cow position:chrX:23192689-23192508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 126

               
               
               Conread position:26-239
               
               
               Cow position:chrX:5455024-5454809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 78

               
               
               Conread position:26-255
               
               
               Cow position:chrX:25713494-25713710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:26-260
               
               
               Cow position:chrX:14152530-14152295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):69, 213

               
               
               Conread position:26-285
               
               
               Cow position:chrX:39704390-39704642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:26-302
               
               
               Cow position:chrX:40121330-40121054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):62, 179

               
               
               Conread position:26-346
               
               
               Cow position:chrX:43101212-43101538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):68, 224

               
               
               Conread position:27-112
               
               
               Cow position:chrX:5899909-5899994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:75
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:27-207
               
               
               Cow position:chrX:15304639-15304456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:27-318
               
               
               Cow position:chrX:19188622-19188917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 193

               
               
               Conread position:27-330
               
               
               Cow position:chrX:42165761-42166071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):69, 270

               
               
               Conread position:28-182
               
               
               Cow position:chrX:37129010-37129163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:28-300
               
               
               Cow position:chrX:45373605-45373329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):66, 134

               
               
               Conread position:28-328
               
               
               Cow position:chrX:4404222-4404526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):67, 239

               
               
               Conread position:28-330
               
               
               Cow position:chrX:3895289-3894980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:29-254
               
               
               Cow position:chrX:45465922-45466154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 144

               
               
               Conread position:29-308
               
               
               Cow position:chrX:7350990-7351267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 132

               
               
               Conread position:30-153
               
               
               Cow position:chrX:170260-170134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:30-385
               
               
               Cow position:chrX:12032660-12033015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):60, 312

               
               
               Conread position:31-250
               
               
               Cow position:chrX:5507364-5507586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:31-285
               
               
               Cow position:chrX:46606820-46606565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:32-254
               
               
               Cow position:chrX:25618227-25617996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:32-255
               
               
               Cow position:chrX:30021407-30021181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:32-294
               
               
               Cow position:chrX:23061145-23061398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:33-309
               
               
               Cow position:chrX:20709767-20710042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):225, 77

               
               
               Conread position:33-330
               
               
               Cow position:chrX:6038230-6037926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 240

               
               
               Conread position:34-200
               
               
               Cow position:chrX:45410350-45410180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:34-215
               
               
               Cow position:chrX:48135187-48135007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):61, 176

               
               
               Conread position:34-267
               
               
               Cow position:chrX:38794418-38794653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:34-286
               
               
               Cow position:chrX:24125378-24125124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):60, 97

               
               
               Conread position:34-330
               
               
               Cow position:chrX:21011629-21011325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:35-221
               
               
               Cow position:chrX:4325803-4325614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:35-250
               
               
               Cow position:chrX:11314084-11313870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):51, 96

               
               
               Conread position:35-318
               
               
               Cow position:chrX:33466311-33466589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):60, 93

               
               
               Conread position:36-184
               
               
               Cow position:chrX:47854684-47854537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:36-213
               
               
               Cow position:chrX:5919165-5919345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:36-300
               
               
               Cow position:chrX:4869238-4869506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:36-309
               
               
               Cow position:chrX:45414605-45414333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):59, 174

               
               
               Conread position:37-223
               
               
               Cow position:chrX:22076227-22076039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 176

               
               
               Conread position:37-309
               
               
               Cow position:chrX:5047201-5046930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):57, 111

               
               
               Conread position:39-375
               
               
               Cow position:chrX:30133626-30133287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:41-318
               
               
               Cow position:chrX:33020186-33020463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):54, 98

               
               
               Conread position:42-197
               
               
               Cow position:chrX:24291981-24291823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:42-309
               
               
               Cow position:chrX:35273045-35273322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):53, 250

               
               
               Conread position:42-326
               
               
               Cow position:chrX:23264736-23264446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 229

               
               
               Conread position:42-330
               
               
               Cow position:chrX:18194614-18194905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):54, 160

               
               
               Conread position:42-352
               
               
               Cow position:chrX:23451470-23451151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 288

               
               
               Conread position:43-221
               
               
               Cow position:chrX:46999959-46999781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:43-264
               
               
               Cow position:chrX:39347084-39346860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):52, 96

               
               
               Conread position:43-276
               
               
               Cow position:chrX:41238661-41238436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):52, 90

               
               
               Conread position:43-369
               
               
               Cow position:chrX:19015144-19015462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 152

               
               
               Conread position:45-255
               
               
               Cow position:chrX:6607113-6607336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 104

               
               
               Conread position:45-309
               
               
               Cow position:chrX:46033014-46032753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):50, 86

               
               
               Conread position:46-230
               
               
               Cow position:chrX:41886090-41885903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:46-280
               
               
               Cow position:chrX:43983875-43984116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:46-300
               
               
               Cow position:chrX:14221788-14222042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):49, 78

               
               
               Conread position:46-330
               
               
               Cow position:chrX:16478607-16478898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:46-330
               
               
               Cow position:chrX:35497791-35498082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:47-251
               
               
               Cow position:chrX:48456639-48456432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:47-385
               
               
               Cow position:chrX:24577859-24577521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 295

               
               
               Conread position:48-256
               
               
               Cow position:chrX:24193816-24194022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 174

               
               
               Conread position:48-301
               
               
               Cow position:chrX:22482982-22482727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):47, 172

               
               
               Conread position:48-329
               
               
               Cow position:chrX:20021270-20021558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:48-350
               
               
               Cow position:chrX:25237885-25238181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 68

               
               
               Conread position:50-197
               
               
               Cow position:chrX:45955890-45956039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 55

               
               
               Conread position:51-270
               
               
               Cow position:chrX:31556788-31556565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 220

               
               
               Conread position:51-330
               
               
               Cow position:chrX:23703057-23702769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:51-330
               
               
               Cow position:chrX:33983894-33983610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 9

               
               
               Conread position:51-375
               
               
               Cow position:chrX:48195331-48195004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):45, 164

               
               
               Conread position:52-262
               
               
               Cow position:chrX:48675787-48675996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 162

               
               
               Conread position:52-300
               
               
               Cow position:chrX:754669-754921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 219

               
               
               Conread position:52-316
               
               
               Cow position:chrX:35041933-35042198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):177, 215

               
               
               Conread position:52-370
               
               
               Cow position:chrX:44835105-44834779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):40, 190

               
               
               Conread position:52-385
               
               
               Cow position:chrX:24903795-24904128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 290

               
               
               Conread position:55-284
               
               
               Cow position:chrX:16808042-16807808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:55-372
               
               
               Cow position:chrX:46723027-46722706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):39, 280

               
               
               Conread position:56-211
               
               
               Cow position:chrX:11973560-11973718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:56-257
               
               
               Cow position:chrX:4269352-4269152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:58-259
               
               
               Cow position:chrX:10293445-10293240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:58-375
               
               
               Cow position:chrX:2467597-2467915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:59-309
               
               
               Cow position:chrX:16762490-16762736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:60-203
               
               
               Cow position:chrX:25587155-25587300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:60-327
               
               
               Cow position:chrX:37836308-37836578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):71, 170

               
               
               Conread position:60-342
               
               
               Cow position:chrX:42874697-42874987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:60-385
               
               
               Cow position:chrX:1749790-1749465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 279

               
               
               Conread position:61-309
               
               
               Cow position:chrX:9997611-9997368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):25, 68

               
               
               Conread position:61-318
               
               
               Cow position:chrX:40647698-40647965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):30, 78

               
               
               Conread position:61-330
               
               
               Cow position:chrX:22915185-22915462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:61-372
               
               
               Cow position:chrX:8730799-8731122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):34, 304

               
               
               Conread position:63-318
               
               
               Cow position:chrX:8925428-8925680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 144

               
               
               Conread position:63-330
               
               
               Cow position:chrX:26709326-26709600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:63-330
               
               
               Cow position:chrX:34175476-34175202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:64-308
               
               
               Cow position:chrX:35413353-35413587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):31, 143

               
               
               Conread position:64-309
               
               
               Cow position:chrX:30921908-30922153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:64-318
               
               
               Cow position:chrX:12017998-12018271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):31, 135

               
               
               Conread position:64-330
               
               
               Cow position:chrX:27751512-27751244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 192

               
               
               Conread position:65-203
               
               
               Cow position:chrX:12314078-12314219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:65-257
               
               
               Cow position:chrX:16531723-16531912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:66-309
               
               
               Cow position:chrX:7496974-7497207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:66-311
               
               
               Cow position:chrX:2963775-2964022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 241

               
               
               Conread position:66-344
               
               
               Cow position:chrX:22549029-22549314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:66-345
               
               
               Cow position:chrX:34270141-34270406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):198, 57

               
               
               Conread position:68-243
               
               
               Cow position:chrX:5856596-5856422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:68-285
               
               
               Cow position:chrX:37416348-37416129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:68-309
               
               
               Cow position:chrX:40183623-40183376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:68-330
               
               
               Cow position:chrX:15094093-15094362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:69-348
               
               
               Cow position:chrX:488218-488501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):26, 70

               
               
               Conread position:69-385
               
               
               Cow position:chrX:41414056-41413740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 273

               
               
               Conread position:70-330
               
               
               Cow position:chrX:19333440-19333173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:70-342
               
               
               Cow position:chrX:22815670-22815949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:70-372
               
               
               Cow position:chrX:10095755-10096060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 157

               
               
               Conread position:71-367
               
               
               Cow position:chrX:44052993-44053283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):187, 19

               
               
               Conread position:71-368
               
               
               Cow position:chrX:45404104-45403802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 147

               
               
               Conread position:71-369
               
               
               Cow position:chrX:17541694-17541985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:71-385
               
               
               Cow position:chrX:5300622-5300936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 226

               
               
               Conread position:72-257
               
               
               Cow position:chrX:45787386-45787566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 140

               
               
               Conread position:74-342
               
               
               Cow position:chrX:2580132-2580407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:74-369
               
               
               Cow position:chrX:17725711-17726000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:79-321
               
               
               Cow position:chrX:2933460-2933706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 54

               
               
               Conread position:85-309
               
               
               Cow position:chrX:27509273-27509056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:88-200
               
               
               Cow position:chrX:5556081-5555970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:88-310
               
               
               Cow position:chrX:28878412-28878202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 109

               
               
               Conread position:88-318
               
               
               Cow position:chrX:25816146-25815929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):221, 114

               
               
               Conread position:88-330
               
               
               Cow position:chrX:27325035-27324789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):164, 191

               
               
               Conread position:88-339
               
               
               Cow position:chrX:46425002-46424749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):164, 53

               
               
               Conread position:88-369
               
               
               Cow position:chrX:23497913-23497642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):176, 42

               
               
               Conread position:88-385
               
               
               Cow position:chrX:22856782-22857082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):164, 292

               
               
               Conread position:88-409
               
               
               Cow position:chrX:27704503-27704179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):164, 260

               
               
               Conread position:90-276
               
               
               Cow position:chrX:48536914-48536728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:90-311
               
               
               Cow position:chrX:20151602-20151818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):162, 112

               
               
               Conread position:90-318
               
               
               Cow position:chrX:32020370-32020140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):166, 125

               
               
               Conread position:93-309
               
               
               Cow position:chrX:41673857-41674077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):24, 178

               
               
               Conread position:93-311
               
               
               Cow position:chrX:27432164-27431946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):105, 160

               
               
               Conread position:93-342
               
               
               Cow position:chrX:9572278-9572531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:93-342
               
               
               Cow position:chrX:9976191-9976444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:93-354
               
               
               Cow position:chrX:45425070-45424808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):160, 243

               
               
               Conread position:95-373
               
               
               Cow position:chrX:678811-678539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):169, 143

               
               
               Conread position:96-318
               
               
               Cow position:chrX:35284375-35284599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):32, 112

               
               
               Conread position:96-360
               
               
               Cow position:chrX:40035693-40035426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):17, 129

               
               
               Conread position:97-250
               
               
               Cow position:chrX:20167963-20168115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 133

               
               
               Conread position:97-266
               
               
               Cow position:chrX:27176561-27176387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:97-309
               
               
               Cow position:chrX:9416934-9416726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):167, 113

               
               
               Conread position:97-309
               
               
               Cow position:chrX:17631043-17630839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:97-309
               
               
               Cow position:chrX:19930416-19930618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:97-309
               
               
               Cow position:chrX:30833079-30832882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):167, 33

               
               
               Conread position:97-318
               
               
               Cow position:chrX:40788962-40789188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 174

               
               
               Conread position:97-318
               
               
               Cow position:chrX:47757170-47756949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):155, 111

               
               
               Conread position:97-327
               
               
               Cow position:chrX:21663068-21663293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:97-333
               
               
               Cow position:chrX:39558591-39558356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):13, 116

               
               
               Conread position:97-342
               
               
               Cow position:chrX:23827348-23827597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:97-351
               
               
               Cow position:chrX:39938758-39938512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):205, 29

               
               
               Conread position:97-374
               
               
               Cow position:chrX:9635422-9635152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):250, 118

               
               
               Conread position:97-375
               
               
               Cow position:chrX:48652968-48652690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 40

               
               
               Conread position:98-215
               
               
               Cow position:chrX:48578175-48578292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-219
               
               
               Cow position:chrX:33519377-33519498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-254
               
               
               Cow position:chrX:38642020-38642173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:98-257
               
               
               Cow position:chrX:2029150-2029308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:98-269
               
               
               Cow position:chrX:31745287-31745117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):100, 124

               
               
               Conread position:98-270
               
               
               Cow position:chrX:10373067-10373248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 176

               
               
               Conread position:98-272
               
               
               Cow position:chrX:42499269-42499096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):135, 111

               
               
               Conread position:98-300
               
               
               Cow position:chrX:9855060-9855263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:98-300
               
               
               Cow position:chrX:9953901-9954104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:98-306
               
               
               Cow position:chrX:24132391-24132186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):156, 51

               
               
               Conread position:98-309
               
               
               Cow position:chrX:7425224-7425436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 188

               
               
               Conread position:98-309
               
               
               Cow position:chrX:23514258-23514048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):80, 58

               
               
               Conread position:98-309
               
               
               Cow position:chrX:32419970-32420187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 125

               
               
               Conread position:98-313
               
               
               Cow position:chrX:2206784-2206579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):166, 112

               
               
               Conread position:98-317
               
               
               Cow position:chrX:21672311-21672534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:98-317
               
               
               Cow position:chrX:46044804-46045024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):126, 139

               
               
               Conread position:98-318
               
               
               Cow position:chrX:16416268-16416487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):154, 48

               
               
               Conread position:98-318
               
               
               Cow position:chrX:27394254-27394043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):211, 112

               
               
               Conread position:98-330
               
               
               Cow position:chrX:33493535-33493768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):213, 38

               
               
               Conread position:98-342
               
               
               Cow position:chrX:21004444-21004684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):162, 38

               
               
               Conread position:98-345
               
               
               Cow position:chrX:47249028-47248780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):30, 126

               
               
               Conread position:98-351
               
               
               Cow position:chrX:44961507-44961758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):160, 119

               
               
               Conread position:98-369
               
               
               Cow position:chrX:619248-618977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):169, 154

               
               
               Conread position:98-369
               
               
               Cow position:chrX:23970149-23970404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):166, 26

               
               
               Conread position:98-369
               
               
               Cow position:chrX:26876121-26875856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):158, 38

               
               
               Conread position:98-369
               
               
               Cow position:chrX:41884658-41884379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):166, 154

               
               
               Conread position:98-375
               
               
               Cow position:chrX:34543547-34543815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):159, 74

               
               
               Conread position:99-256
               
               
               Cow position:chrX:9360644-9360800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:99-300
               
               
               Cow position:chrX:11939163-11938969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):157, 46

               
               
               Conread position:99-318
               
               
               Cow position:chrX:45598843-45598622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):165, 146

               
               
               Conread position:100-309
               
               
               Cow position:chrX:41167202-41166997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):162, 36

               
               
               Conread position:100-318
               
               
               Cow position:chrX:42492748-42492538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):155, 21

               
               
               Conread position:100-340
               
               
               Cow position:chrX:17888644-17888418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):209, 77

               
               
               Conread position:100-351
               
               
               Cow position:chrX:27680165-27680405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):164, 30

               
               
               Conread position:101-266
               
               
               Cow position:chrX:9837901-9838067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:101-309
               
               
               Cow position:chrX:27772193-27771994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):160, 42

               
               
               Conread position:101-340
               
               
               Cow position:chrX:17662834-17662592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):163, 151

               
               
               Conread position:101-367
               
               
               Cow position:chrX:40116188-40116440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):157, 35

               
               
               Conread position:102-309
               
               
               Cow position:chrX:11589828-11589620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):47, 37

               
               
               Conread position:102-360
               
               
               Cow position:chrX:20752027-20752277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):156, 23

               
               
               Conread position:103-318
               
               
               Cow position:chrX:27514633-27514848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):140, 182

               
               
               Conread position:103-374
               
               
               Cow position:chrX:22074565-22074834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):216, 107

               
               
               Conread position:104-254
               
               
               Cow position:chrX:32623349-32623498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:104-294
               
               
               Cow position:chrX:6639890-6640082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):32, 107

               
               
               Conread position:104-302
               
               
               Cow position:chrX:7513282-7513474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):156, 40

               
               
               Conread position:104-309
               
               
               Cow position:chrX:38549214-38549414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:104-311
               
               
               Cow position:chrX:2383255-2383457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):154, 32

               
               
               Conread position:104-313
               
               
               Cow position:chrX:4942985-4942782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):6, 87

               
               
               Conread position:105-301
               
               
               Cow position:chrX:17231501-17231692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):147, 104

               
               
               Conread position:105-309
               
               
               Cow position:chrX:9201314-9201517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):159, 31

               
               
               Conread position:105-368
               
               
               Cow position:chrX:36975716-36975976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):153, 108

               
               
               Conread position:106-314
               
               
               Cow position:chrX:42339168-42338971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:106-327
               
               
               Cow position:chrX:877255-877045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):152, 30

               
               
               Conread position:106-327
               
               
               Cow position:chrX:30963104-30962885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):158, 96

               
               
               Conread position:106-333
               
               
               Cow position:chrX:6278738-6278506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:106-333
               
               
               Cow position:chrX:13382092-13382324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:106-375
               
               
               Cow position:chrX:48010362-48010635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):146, 233

               
               
               Conread position:107-257
               
               
               Cow position:chrX:5900226-5900370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:107-296
               
               
               Cow position:chrX:22821816-22822005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):171, 157

               
               
               Conread position:107-342
               
               
               Cow position:chrX:14900952-14900726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:108-309
               
               
               Cow position:chrX:7721754-7721956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):116, 145

               
               
               Conread position:108-309
               
               
               Cow position:chrX:42381330-42381135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):147, 99

               
               
               Conread position:108-333
               
               
               Cow position:chrX:37048811-37048583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):32, 157

               
               
               Conread position:108-369
               
               
               Cow position:chrX:35542661-35542920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):156, 144

               
               
               Conread position:109-285
               
               
               Cow position:chrX:18812029-18812196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:109-297
               
               
               Cow position:chrX:13265849-13265668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):155, 101

               
               
               Conread position:111-310
               
               
               Cow position:chrX:48684450-48684258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):141, 91

               
               
               Conread position:111-345
               
               
               Cow position:chrX:11856202-11856434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):153, 46

               
               
               Conread position:113-302
               
               
               Cow position:chrX:46430087-46429898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):5, 101

               
               
               Conread position:114-300
               
               
               Cow position:chrX:16324187-16324006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):138, 14

               
               
               Conread position:114-309
               
               
               Cow position:chrX:17042466-17042660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):144, 95

               
               
               Conread position:115-351
               
               
               Cow position:chrX:16541899-16541666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):141, 20

               
               
               Conread position:117-309
               
               
               Cow position:chrX:11633457-11633647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):132, 93

               
               
               Conread position:117-369
               
               
               Cow position:chrX:23091660-23091895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):192, 93

               
               
               Conread position:118-318
               
               
               Cow position:chrX:36283125-36283331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):147, 134

               
               
               Conread position:118-341
               
               
               Cow position:chrX:29602053-29601827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:120-309
               
               
               Cow position:chrX:48236593-48236786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):65, 164

               
               
               Conread position:130-286
               
               
               Cow position:chrX:9425950-9425796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):134, 87

               
               
               Conread position:130-317
               
               
               Cow position:chrX:29542427-29542245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):134, 80

               
               
               Conread position:130-373
               
               
               Cow position:chrX:38852988-38853235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):134, 79

               
               
               Conread position:132-345
               
               
               Cow position:chrX:46587611-46587826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):120, 77

               
               
               Conread position:134-279
               
               
               Cow position:chrX:29545084-29544940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 55

               
               
               Conread position:135-340
               
               
               Cow position:chrX:17908487-17908287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):126, 64

               
               
               Conread position:139-346
               
               
               Cow position:chrX:1499470-1499671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 62

               
               
               Conread position:141-318
               
               
               Cow position:chrX:37781315-37781132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 130

               
               
               Conread position:141-342
               
               
               Cow position:chrX:36961438-36961646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:141-375
               
               
               Cow position:chrX:33000706-33000936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):123, 89

               
               
               Conread position:149-311
               
               
               Cow position:chrX:23785464-23785631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:149-352
               
               
               Cow position:chrX:31311836-31312042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:150-309
               
               
               Cow position:chrX:42235722-42235561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 69
Show alignments to all cow chromosomes.
Conread position:	1-93
Cow position:	chrX:42381768-42381676 (view UCSC Genome Browser custom track)
Alignm length:	93
Alignm identity:	79
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	0, 0
Conread position:	1-94
Cow position:	chrX:22866860-22866767 (view UCSC Genome Browser custom track)
Alignm length:	94
Alignm identity:	80
Alignm E-value:	4e-22
Alignm gaps (pig, cow):	0, 0
Conread position:	1-100
Cow position:	chrX:25816595-25816496 (view UCSC Genome Browser custom track)
Alignm length:	100
Alignm identity:	84
Alignm E-value:	4e-23
Alignm gaps (pig, cow):	0, 0
Conread position:	1-106
Cow position:	chrX:32419848-32419954 (view UCSC Genome Browser custom track)
Alignm length:	107
Alignm identity:	90
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	14, 0
Conread position:	1-108
Cow position:	chrX:1514766-1514658 (view UCSC Genome Browser custom track)
Alignm length:	109
Alignm identity:	92
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	94, 0
Conread position:	1-114
Cow position:	chrX:39757693-39757809 (view UCSC Genome Browser custom track)
Alignm length:	117
Alignm identity:	96
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	93, 0
Conread position:	1-116
Cow position:	chrX:4750713-4750601 (view UCSC Genome Browser custom track)
Alignm length:	116
Alignm identity:	96
Alignm E-value:	6e-25
Alignm gaps (pig, cow):	46, 0
Conread position:	1-118
Cow position:	chrX:1823722-1823842 (view UCSC Genome Browser custom track)
Alignm length:	121
Alignm identity:	99
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	87, 0
Conread position:	1-133
Cow position:	chrX:12690999-12690864 (view UCSC Genome Browser custom track)
Alignm length:	136
Alignm identity:	107
Alignm E-value:	6e-26
Alignm gaps (pig, cow):	94, 0
Conread position:	1-134
Cow position:	chrX:23341337-23341201 (view UCSC Genome Browser custom track)
Alignm length:	137
Alignm identity:	109
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	93, 0
Conread position:	1-136
Cow position:	chrX:40224583-40224445 (view UCSC Genome Browser custom track)
Alignm length:	139
Alignm identity:	110
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	93, 0
Conread position:	1-137
Cow position:	chrX:14008995-14008854 (view UCSC Genome Browser custom track)
Alignm length:	142
Alignm identity:	118
Alignm E-value:	4e-32
Alignm gaps (pig, cow):	7, 0
Conread position:	1-138
Cow position:	chrX:45851591-45851732 (view UCSC Genome Browser custom track)
Alignm length:	142
Alignm identity:	115
Alignm E-value:	9e-30
Alignm gaps (pig, cow):	66, 0
Conread position:	1-140
Cow position:	chrX:15231968-15231826 (view UCSC Genome Browser custom track)
Alignm length:	144
Alignm identity:	116
Alignm E-value:	8e-29
Alignm gaps (pig, cow):	7, 73
Conread position:	1-144
Cow position:	chrX:38852819-38852962 (view UCSC Genome Browser custom track)
Alignm length:	144
Alignm identity:	118
Alignm E-value:	2e-34
Alignm gaps (pig, cow):	0, 0
Conread position:	1-155
Cow position:	chrX:47177935-47177778 (view UCSC Genome Browser custom track)
Alignm length:	159
Alignm identity:	116
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	87, 131
Conread position:	1-157
Cow position:	chrX:22449574-22449738 (view UCSC Genome Browser custom track)
Alignm length:	165
Alignm identity:	133
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	94, 0
Conread position:	1-162
Cow position:	chrX:6407005-6407163 (view UCSC Genome Browser custom track)
Alignm length:	163
Alignm identity:	128
Alignm E-value:	3e-31
Alignm gaps (pig, cow):	58, 128
Conread position:	1-166
Cow position:	chrX:43199097-43199263 (view UCSC Genome Browser custom track)
Alignm length:	167
Alignm identity:	122
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	94, 0
Conread position:	1-168
Cow position:	chrX:2278026-2277857 (view UCSC Genome Browser custom track)
Alignm length:	170
Alignm identity:	119
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	130, 0