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Cow genome map

           
Conread name:
           
Ss1.1-risp39_i19.5
        

               
Conread position:
               
160-538
               

               
Cow position:
               
chr1:9259185-9259558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 25
               

               
Conread position:
               
166-540
               

               
Cow position:
               
chr1:67292342-67292714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
176, 6
               

               
Conread position:
               
168-467
               

               
Cow position:
               
chr1:82565216-82565513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
184, 17
               

               
Conread position:
               
168-533
               

               
Cow position:
               
chr1:48246545-48246911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 23
               

               
Conread position:
               
168-533
               

               
Cow position:
               
chr1:66999725-67000084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 17
               

               
Conread position:
               
168-533
               

               
Cow position:
               
chr1:82912422-82912063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 17
               

               
Conread position:
               
168-538
               

               
Cow position:
               
chr1:86547429-86547062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 17
               

               
Conread position:
               
168-540
               

               
Cow position:
               
chr1:8555041-8555415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 17
               

               
Conread position:
               
168-540
               

               
Cow position:
               
chr1:21088126-21088497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 17
               

               
Conread position:
               
168-571
               

               
Cow position:
               
chr1:11291397-11291001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 17
               

               
Conread position:
               
168-571
               

               
Cow position:
               
chr1:59209437-59209037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 17
               

               
Conread position:
               
184-540
               

               
Cow position:
               
chr1:58883053-58882701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 51
               

               
Conread position:
               
185-532
               

               
Cow position:
               
chr1:56143603-56143263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 7
               

               
Conread position:
               
185-533
               

               
Cow position:
               
chr1:72984231-72984572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 314
               

               
Conread position:
               
185-538
               

               
Cow position:
               
chr1:40512284-40511933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 72
               

               
Conread position:
               
185-570
               

               
Cow position:
               
chr1:44100670-44100277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
133, 69
               

               
Conread position:
               
186-302
               

               
Cow position:
               
chr1:102549952-102550068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
186-325
               

               
Cow position:
               
chr1:40054083-40054222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
186-344
               

               
Cow position:
               
chr1:95240097-95240255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
186-360
               

               
Cow position:
               
chr1:49495496-49495320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
186-368
               

               
Cow position:
               
chr1:33712823-33713007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
186-384
               

               
Cow position:
               
chr1:18016005-18016198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
166, 84
               

               
Conread position:
               
186-394
               

               
Cow position:
               
chr1:88564075-88563866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
160, 140
               

               
Conread position:
               
186-457
               

               
Cow position:
               
chr1:76751917-76751647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
163, 187
               

               
Conread position:
               
186-460
               

               
Cow position:
               
chr1:56490580-56490856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
166, 176
               

               
Conread position:
               
186-465
               

               
Cow position:
               
chr1:11860521-11860242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 187
               

               
Conread position:
               
186-466
               

               
Cow position:
               
chr1:88213062-88212784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 72
               

               
Conread position:
               
186-476
               

               
Cow position:
               
chr1:39544495-39544788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
40, 66
               

               
Conread position:
               
186-485
               

               
Cow position:
               
chr1:98785432-98785731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
140, 164
               

               
Conread position:
               
186-486
               

               
Cow position:
               
chr1:33896471-33896772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 186
               

               
Conread position:
               
186-486
               

               
Cow position:
               
chr1:102812913-102813209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
186-505
               

               
Cow position:
               
chr1:89426302-89426622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 176
               

               
Conread position:
               
186-524
               

               
Cow position:
               
chr1:89769978-89769650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
240, 144
               

               
Conread position:
               
186-531
               

               
Cow position:
               
chr1:39540208-39539865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
186-531
               

               
Cow position:
               
chr1:57568664-57569006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 187
               

               
Conread position:
               
186-531
               

               
Cow position:
               
chr1:69767183-69767526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 275
               

               
Conread position:
               
186-532
               

               
Cow position:
               
chr1:81863775-81863427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 186
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:1460486-1460118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
16, 92
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:5502697-5503041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 118
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:15027090-15027430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 122
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:17012010-17011659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:26518157-26517813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 242
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:28711618-28711966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 311
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:28873809-28874155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 309
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:29608955-29608614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
154, 107
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:31365361-31365024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 169
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:33551655-33552001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 309
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:40574942-40575288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 308
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:42737187-42737532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 99
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:49973459-49973113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 309
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:52358543-52358184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 333
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:63502561-63502900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 102
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:63605047-63604699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 118
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:67287552-67287895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:68606812-68606467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 129
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:71561844-71561498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 308
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:72186150-72185807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 49
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:76544807-76544461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 320
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:79111225-79111563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 90
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:79456241-79455880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 337
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:82923458-82923112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 320
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:85779709-85779372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 149
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:85792407-85792753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 308
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:93855248-93855591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 90
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:99914152-99914500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 322
               

               
Conread position:
               
186-533
               

               
Cow position:
               
chr1:102434309-102433966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 201
               

               
Conread position:
               
186-536
               

               
Cow position:
               
chr1:13450933-13451283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 308
               

               
Conread position:
               
186-539
               

               
Cow position:
               
chr1:30534289-30533940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 202
               

               
Conread position:
               
186-539
               

               
Cow position:
               
chr1:53199269-53199619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 98
               

               
Conread position:
               
186-539
               

               
Cow position:
               
chr1:58336567-58336918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 95
               

               
Conread position:
               
186-539
               

               
Cow position:
               
chr1:72038830-72038489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 148
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:5355855-5356212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 309
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:6194963-6195316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 309
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:8825778-8826130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 98
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:20829639-20829988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 187
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:25179298-25178947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 178
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:25550690-25551043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 309
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:29035017-29035357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
193, 163
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:29363026-29363375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:30063117-30063457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
209, 35
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:31397421-31397776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 62
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:44044511-44044868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 309
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:62805448-62805098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 70
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:67834410-67834052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 32
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:72081495-72081847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 309
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:80358452-80358095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 94
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:88131505-88131855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 102
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:98659179-98658826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 120
               

               
Conread position:
               
186-540
               

               
Cow position:
               
chr1:99019283-99018928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
163, 311
               

               
Conread position:
               
186-542
               

               
Cow position:
               
chr1:17941055-17940712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
166, 65
               

               
Conread position:
               
186-570
               

               
Cow position:
               
chr1:31328767-31328389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
106, 28
               

               
Conread position:
               
186-571
               

               
Cow position:
               
chr1:38416618-38416998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 83
               

               
Conread position:
               
186-571
               

               
Cow position:
               
chr1:56164278-56164670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 42
               

               
Conread position:
               
186-571
               

               
Cow position:
               
chr1:57424112-57423724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 312
               

               
Conread position:
               
186-571
               

               
Cow position:
               
chr1:62243911-62243531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 200
               

               
Conread position:
               
186-571
               

               
Cow position:
               
chr1:76620953-76620568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 130
               

               
Conread position:
               
186-574
               

               
Cow position:
               
chr1:30282971-30282571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 62
               

               
Conread position:
               
186-574
               

               
Cow position:
               
chr1:32908552-32908943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 130
               

               
Conread position:
               
186-574
               

               
Cow position:
               
chr1:33852014-33852416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 310
               

               
Conread position:
               
186-574
               

               
Cow position:
               
chr1:55777313-55777712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 53
               

               
Conread position:
               
186-574
               

               
Cow position:
               
chr1:56723887-56724284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
166, 80
               

               
Conread position:
               
186-574
               

               
Cow position:
               
chr1:57657617-57658013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 34
               

               
Conread position:
               
186-574
               

               
Cow position:
               
chr1:60340028-60340429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
186-574
               

               
Cow position:
               
chr1:61309948-61310349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 310
               

               
Conread position:
               
186-574
               

               
Cow position:
               
chr1:65387057-65387448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 129
               

               
Conread position:
               
186-574
               

               
Cow position:
               
chr1:69921706-69921306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 307
               

               
Conread position:
               
186-576
               

               
Cow position:
               
chr1:31417788-31417368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 186
               

               
Conread position:
               
186-576
               

               
Cow position:
               
chr1:73070326-73069937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 89
               

               
Conread position:
               
187-574
               

               
Cow position:
               
chr1:82653395-82653792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 97
               

               
Conread position:
               
188-531
               

               
Cow position:
               
chr1:18241784-18241448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 116
               

               
Conread position:
               
189-458
               

               
Cow position:
               
chr1:100100931-100100671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 12
               

               
Conread position:
               
189-576
               

               
Cow position:
               
chr1:57662756-57663153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
190-325
               

               
Cow position:
               
chr1:22620191-22620057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
191-533
               

               
Cow position:
               
chr1:21999220-21998882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 280
               

               
Conread position:
               
192-320
               

               
Cow position:
               
chr1:66685581-66685455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
192-337
               

               
Cow position:
               
chr1:89481506-89481646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
97, 35
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr1:24443587-24443261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 44
               

               
Conread position:
               
192-533
               

               
Cow position:
               
chr1:55156256-55155927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 48
               

               
Conread position:
               
192-533
               

               
Cow position:
               
chr1:88375049-88374733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
122, 34
               

               
Conread position:
               
192-533
               

               
Cow position:
               
chr1:94660410-94660748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 134
               

               
Conread position:
               
192-567
               

               
Cow position:
               
chr1:18139720-18139347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 41
               

               
Conread position:
               
192-574
               

               
Cow position:
               
chr1:88269502-88269107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
192-575
               

               
Cow position:
               
chr1:43570680-43570285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 122
               

               
Conread position:
               
193-325
               

               
Cow position:
               
chr1:77116115-77115983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
48, 123
               

               
Conread position:
               
193-533
               

               
Cow position:
               
chr1:3385288-3384950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 105
               

               
Conread position:
               
201-532
               

               
Cow position:
               
chr1:22344824-22345151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
151, 99
               

               
Conread position:
               
201-533
               

               
Cow position:
               
chr1:12061470-12061139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 294
               

               
Conread position:
               
201-533
               

               
Cow position:
               
chr1:18273932-18274266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 104
               

               
Conread position:
               
201-533
               

               
Cow position:
               
chr1:22843386-22843715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 69
               

               
Conread position:
               
201-533
               

               
Cow position:
               
chr1:31402714-31402389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
137, 19
               

               
Conread position:
               
201-533
               

               
Cow position:
               
chr1:91892372-91892044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 64
               

               
Conread position:
               
201-540
               

               
Cow position:
               
chr1:22905499-22905833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
149, 187
               

               
Conread position:
               
201-540
               

               
Cow position:
               
chr1:102781547-102781215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
202-456
               

               
Cow position:
               
chr1:72992271-72992537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
53, 46
               

               
Conread position:
               
202-540
               

               
Cow position:
               
chr1:57697411-57697084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 132
               

               
Conread position:
               
203-571
               

               
Cow position:
               
chr1:27178720-27178349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 262
               

               
Conread position:
               
204-530
               

               
Cow position:
               
chr1:43985334-43985010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 193
               

               
Conread position:
               
205-535
               

               
Cow position:
               
chr1:7142031-7141711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 130
               

               
Conread position:
               
205-571
               

               
Cow position:
               
chr1:18027050-18026685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 87
               

               
Conread position:
               
208-321
               

               
Cow position:
               
chr1:21936299-21936185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
209-542
               

               
Cow position:
               
chr1:86610904-86611228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
102, 11
               

               
Conread position:
               
215-575
               

               
Cow position:
               
chr1:67079572-67079199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
34, 181
               

               
Conread position:
               
216-533
               

               
Cow position:
               
chr1:91899775-91900098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
9, 295
               

               
Conread position:
               
218-389
               

               
Cow position:
               
chr1:56937261-56937089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
125, 164
               

               
Conread position:
               
218-540
               

               
Cow position:
               
chr1:9381842-9381520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 152
               

               
Conread position:
               
219-533
               

               
Cow position:
               
chr1:69403773-69404080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 32
               

               
Conread position:
               
226-574
               

               
Cow position:
               
chr1:59648063-59648416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
127, 138
               

               
Conread position:
               
226-574
               

               
Cow position:
               
chr1:86595727-86595366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
124, 74
               

               
Conread position:
               
227-540
               

               
Cow position:
               
chr1:58200741-58200427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 243
               

               
Conread position:
               
238-533
               

               
Cow position:
               
chr1:74286008-74285715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 13
               

               
Conread position:
               
238-556
               

               
Cow position:
               
chr1:61730768-61730454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
112, 42
               

               
Conread position:
               
242-438
               

               
Cow position:
               
chr1:29979147-29978946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr1:81927718-81927498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 37
               

               
Conread position:
               
244-575
               

               
Cow position:
               
chr1:79636193-79635847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 39
               

               
Conread position:
               
247-542
               

               
Cow position:
               
chr1:28278972-28279255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
10, 6
               

               
Conread position:
               
251-533
               

               
Cow position:
               
chr1:56193374-56193096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 138
               

               
Conread position:
               
253-540
               

               
Cow position:
               
chr1:20081133-20080861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
278, 31
               

               
Conread position:
               
255-575
               

               
Cow position:
               
chr1:24652090-24652407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
264-540
               

               
Cow position:
               
chr1:17035794-17035520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 192
               

               
Conread position:
               
264-575
               

               
Cow position:
               
chr1:53364364-53364684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 70
               

               
Conread position:
               
266-576
               

               
Cow position:
               
chr1:16216866-16216545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
83, 96
               

               
Conread position:
               
267-575
               

               
Cow position:
               
chr1:72944586-72944893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
5, 67
               

               
Conread position:
               
271-533
               

               
Cow position:
               
chr1:23052575-23052838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 225
               

               
Conread position:
               
279-532
               

               
Cow position:
               
chr1:2543601-2543347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
282-530
               

               
Cow position:
               
chr1:30539515-30539266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 43
               

               
Conread position:
               
284-533
               

               
Cow position:
               
chr1:57972886-57972632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
45, 217
               

               
Conread position:
               
293-538
               

               
Cow position:
               
chr1:55276198-55275954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
59, 201
               

               
Conread position:
               
293-540
               

               
Cow position:
               
chr1:20525311-20525562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 37
               

               
Conread position:
               
298-541
               

               
Cow position:
               
chr1:73198184-73197938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
54, 202
               

               
Conread position:
               
314-505
               

               
Cow position:
               
chr1:40054492-40054686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
318-569
               

               
Cow position:
               
chr1:77115842-77115593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
34, 188
               

               
Conread position:
               
329-575
               

               
Cow position:
               
chr1:55321201-55320948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
23, 156
               

               
Conread position:
               
338-575
               

               
Cow position:
               
chr1:30519475-30519726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
117, 9
               

               
Conread position:
               
350-574
               

               
Cow position:
               
chr1:99315170-99315390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 112
               

               
Conread position:
               
362-575
               

               
Cow position:
               
chr1:34693600-34693813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 6
               

               
Conread position:
               
369-576
               

               
Cow position:
               
chr1:3934347-3934128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 173
               

               
Conread position:
               
386-540
               

               
Cow position:
               
chr1:76703355-76703201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 107
               

               
Conread position:
               
401-533
               

               
Cow position:
               
chr1:32566975-32566847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
420-533
               

               
Cow position:
               
chr1:81777390-81777508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               
Show alignments to all cow chromosomes.