Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 112-440
Cow position:
Alignm length: 334
Alignm identity: 214
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 53

Conread position: 154-346
Cow position:
Alignm length: 196
Alignm identity: 139
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 16

Conread position: 168-486
Cow position:
Alignm length: 323
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-571
Cow position:
Alignm length: 408
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-574
Cow position:
Alignm length: 423
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 17

Conread position: 174-573
Cow position:
Alignm length: 421
Alignm identity: 292
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 76, 126

Conread position: 175-297
Cow position:
Alignm length: 128
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 176-574
Cow position:
Alignm length: 415
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 319

Conread position: 184-487
Cow position:
Alignm length: 309
Alignm identity: 213
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 132, 155

Conread position: 186-299
Cow position:
Alignm length: 114
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 186-344
Cow position:
Alignm length: 159
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 186-353
Cow position:
Alignm length: 170
Alignm identity: 128
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 153, 0

Conread position: 186-430
Cow position:
Alignm length: 253
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 181

Conread position: 186-459
Cow position:
Alignm length: 278
Alignm identity: 199
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 65, 16

Conread position: 186-489
Cow position:
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 80

Conread position: 186-505
Cow position:
Alignm length: 323
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 186-519
Cow position:
Alignm length: 338
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 329

Conread position: 186-526
Cow position:
Alignm length: 345
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-529
Cow position:
Alignm length: 352
Alignm identity: 237
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 121, 49

Conread position: 186-529
Cow position:
Alignm length: 344
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 0

Conread position: 186-531
Cow position:
Alignm length: 349
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 178

Conread position: 186-531
Cow position:
Alignm length: 351
Alignm identity: 231
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 56, 171

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position:
Alignm length: 360
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 317

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 24

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 30

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 235
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 165, 50

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 68

Conread position: 186-533
Cow position:
Alignm length: 364
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position:
Alignm length: 358
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 80

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 65

Conread position: 186-533
Cow position:
Alignm length: 348
Alignm identity: 237
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 134, 0

Conread position: 186-534
Cow position:
Alignm length: 352
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 309

Conread position: 186-539
Cow position:
Alignm length: 357
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 85

Conread position: 186-540
Cow position:
Alignm length: 359
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 110

Conread position: 186-540
Cow position:
Alignm length: 357
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 48

Conread position: 186-540
Cow position:
Alignm length: 362
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-540
Cow position:
Alignm length: 378
Alignm identity: 261
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 78, 109

Conread position: 186-551
Cow position:
Alignm length: 372
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-555
Cow position:
Alignm length: 373
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 322

Conread position: 186-570
Cow position:
Alignm length: 397
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 161

Conread position: 186-571
Cow position:
Alignm length: 389
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-571
Cow position:
Alignm length: 391
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 201

Conread position: 186-571
Cow position:
Alignm length: 391
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 118

Conread position: 186-571
Cow position:
Alignm length: 390
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-571
Cow position:
Alignm length: 391
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 110

Conread position: 186-574
Cow position:
Alignm length: 405
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 101

Conread position: 186-574
Cow position:
Alignm length: 399
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 54

Conread position: 186-574
Cow position:
Alignm length: 404
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 114

Conread position: 186-574
Cow position:
Alignm length: 395
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 50

Conread position: 186-574
Cow position:
Alignm length: 405
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-574
Cow position:
Alignm length: 403
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 73

Conread position: 186-574
Cow position:
Alignm length: 395
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 50

Conread position: 186-575
Cow position:
Alignm length: 416
Alignm identity: 285
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 140, 64

Conread position: 186-575
Cow position:
Alignm length: 408
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 202

Conread position: 186-575
Cow position:
Alignm length: 417
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 275

Conread position: 188-322
Cow position:
Alignm length: 135
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 188-540
Cow position:
Alignm length: 356
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 273

Conread position: 191-485
Cow position:
Alignm length: 298
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 0

Conread position: 191-533
Cow position:
Alignm length: 346
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 196

Conread position: 192-333
Cow position:
Alignm length: 142
Alignm identity: 116
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 192-440
Cow position:
Alignm length: 252
Alignm identity: 179
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 22

Conread position: 192-532
Cow position:
Alignm length: 355
Alignm identity: 249
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 152, 28

Conread position: 192-540
Cow position:
Alignm length: 361
Alignm identity: 251
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 50, 142

Conread position: 192-541
Cow position:
Alignm length: 361
Alignm identity: 245
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 122, 22

Conread position: 193-333
Cow position:
Alignm length: 141
Alignm identity: 115
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 79, 0

Conread position: 193-533
Cow position:
Alignm length: 344
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 91

Conread position: 194-533
Cow position:
Alignm length: 347
Alignm identity: 228
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 44, 166

Conread position: 194-574
Cow position:
Alignm length: 394
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 348

Conread position: 199-467
Cow position:
Alignm length: 273
Alignm identity: 183
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 151, 65

Conread position: 201-540
Cow position:
Alignm length: 343
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 83

Conread position: 201-548
Cow position:
Alignm length: 356
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 46

Conread position: 201-576
Cow position:
Alignm length: 387
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 50

Conread position: 203-540
Cow position:
Alignm length: 346
Alignm identity: 241
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 149, 169

Conread position: 204-533
Cow position:
Alignm length: 332
Alignm identity: 217
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 6, 100

Conread position: 206-533
Cow position:
Alignm length: 330
Alignm identity: 227
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 58, 83

Conread position: 213-571
Cow position:
Alignm length: 364
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 281

Conread position: 218-576
Cow position:
Alignm length: 363
Alignm identity: 228
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 28, 18

Conread position: 224-464
Cow position:
Alignm length: 244
Alignm identity: 168
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 130

Conread position: 229-573
Cow position:
Alignm length: 357
Alignm identity: 241
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 123, 0

Conread position: 231-486
Cow position:
Alignm length: 259
Alignm identity: 189
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 121, 230

Conread position: 242-489
Cow position:
Alignm length: 251
Alignm identity: 179
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 109, 30

Conread position: 256-533
Cow position:
Alignm length: 283
Alignm identity: 201
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 96, 55

Conread position: 277-533
Cow position:
Alignm length: 261
Alignm identity: 193
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 75, 110

Conread position: 279-540
Cow position:
Alignm length: 266
Alignm identity: 191
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 71, 34

Conread position: 288-575
Cow position:
Alignm length: 299
Alignm identity: 197
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 63, 159

Conread position: 288-575
Cow position:
Alignm length: 301
Alignm identity: 205
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 52, 26

Conread position: 308-486
Cow position:
Alignm length: 182
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 317-540
Cow position:
Alignm length: 229
Alignm identity: 159
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 12, 32

Conread position: 333-540
Cow position:
Alignm length: 211
Alignm identity: 163
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 64, 160

Conread position: 338-570
Cow position:
Alignm length: 234
Alignm identity: 163
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 59, 43

Conread position: 348-527
Cow position:
Alignm length: 187
Alignm identity: 143
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 49, 164

Conread position: 367-576
Cow position:
Alignm length: 218
Alignm identity: 157
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 34, 0

Conread position: 370-533
Cow position:
Alignm length: 165
Alignm identity: 130
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 27, 118

Show alignments to all cow chromosomes.