Cow genome map
| Conread name: | Ss1.1-risp39_i19.5 |
| Conread position: | 3-176 |
| Cow position: | chr12:48405457-48405645 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 36, 107 |
| Conread position: | 168-525 |
| Cow position: | chr12:3361587-3361941 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 17 |
| Conread position: | 172-540 |
| Cow position: | chr12:32678285-32677906 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 348 |
| Conread position: | 185-451 |
| Cow position: | chr12:28765342-28765073 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 185-564 |
| Cow position: | chr12:35313980-35313611 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 49 |
| Conread position: | 185-574 |
| Cow position: | chr12:11098913-11099298 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 119 |
| Conread position: | 186-310 |
| Cow position: | chr12:1780879-1780756 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 186-391 |
| Cow position: | chr12:4158054-4158261 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 186-391 |
| Cow position: | chr12:8197893-8198100 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 186-457 |
| Cow position: | chr12:24557419-24557157 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 164, 50 |
| Conread position: | 186-503 |
| Cow position: | chr12:36479846-36480152 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 186-525 |
| Cow position: | chr12:20997419-20997074 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 327 |
| Conread position: | 186-525 |
| Cow position: | chr12:43030710-43030370 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 166, 310 |
| Conread position: | 186-532 |
| Cow position: | chr12:36367513-36367847 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 50 |
| Conread position: | 186-533 |
| Cow position: | chr12:6405967-6405620 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 61 |
| Conread position: | 186-533 |
| Cow position: | chr12:25100379-25100051 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 231 |
| Conread position: | 186-533 |
| Cow position: | chr12:25262790-25262444 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 320 |
| Conread position: | 186-533 |
| Cow position: | chr12:36449255-36449586 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 50 |
| Conread position: | 186-533 |
| Cow position: | chr12:42858859-42858513 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 108 |
| Conread position: | 186-538 |
| Cow position: | chr12:1888837-1888485 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 242 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 157, 292 |
| Conread position: | 186-538 |
| Cow position: | chr12:21942416-21942759 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 16 |
| Conread position: | 186-539 |
| Cow position: | chr12:21428536-21428898 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 188 |
| Conread position: | 186-540 |
| Cow position: | chr12:21209330-21209680 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 257 |
| Conread position: | 186-540 |
| Cow position: | chr12:32654220-32654570 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 166, 75 |
| Conread position: | 186-573 |
| Cow position: | chr12:37559668-37560083 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 281 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 166, 196 |
| Conread position: | 186-574 |
| Cow position: | chr12:14661953-14661551 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 186-574 |
| Cow position: | chr12:21198639-21199038 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 89 |
| Conread position: | 186-574 |
| Cow position: | chr12:32063797-32064172 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 24 |
| Conread position: | 186-574 |
| Cow position: | chr12:41380357-41380757 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 309 |
| Conread position: | 186-575 |
| Cow position: | chr12:17979413-17979807 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 163, 135 |
| Conread position: | 188-486 |
| Cow position: | chr12:21254034-21253732 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 191-503 |
| Cow position: | chr12:36427915-36428217 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 161, 45 |
| Conread position: | 191-533 |
| Cow position: | chr12:600674-600339 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 192 |
| Conread position: | 192-441 |
| Cow position: | chr12:21226285-21226035 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 66, 128 |
| Conread position: | 192-533 |
| Cow position: | chr12:25554689-25554354 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 66 |
| Conread position: | 192-534 |
| Cow position: | chr12:1403177-1403517 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 78 |
| Conread position: | 192-538 |
| Cow position: | chr12:27932222-27931881 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 129 |
| Conread position: | 192-540 |
| Cow position: | chr12:8677417-8677073 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 173 |
| Conread position: | 196-539 |
| Cow position: | chr12:11870963-11871302 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 126 |
| Conread position: | 199-412 |
| Cow position: | chr12:35815204-35815003 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 201-533 |
| Cow position: | chr12:27855273-27854942 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 289 |
| Conread position: | 201-534 |
| Cow position: | chr12:22205051-22204719 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 305 |
| Conread position: | 208-520 |
| Cow position: | chr12:1869982-1870276 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 188, 28 |
| Conread position: | 224-468 |
| Cow position: | chr12:15077872-15078108 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 49 |
| Conread position: | 227-476 |
| Cow position: | chr12:21289713-21289964 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 76, 61 |
| Conread position: | 251-540 |
| Cow position: | chr12:11580492-11580774 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 21 |
| Conread position: | 269-533 |
| Cow position: | chr12:21387483-21387220 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 83, 226 |
| Conread position: | 271-486 |
| Cow position: | chr12:36337552-36337760 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 78, 143 |
| Conread position: | 288-574 |
| Cow position: | chr12:12292749-12293039 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 55, 140 |
| Conread position: | 301-489 |
| Cow position: | chr12:20879766-20879951 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 314-575 |
| Cow position: | chr12:349172-349439 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 32 |
| Conread position: | 335-538 |
| Cow position: | chr12:1777476-1777271 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 120 |
| Conread position: | 352-540 |
| Cow position: | chr12:35345407-35345586 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 357-566 |
| Cow position: | chr12:28004786-28004993 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 56 |
Show alignments to all cow chromosomes.