Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 138-531
Cow position: chr13:15450713-15450329 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 203

Conread position: 168-342
Cow position: chr13:35030980-35031151 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 168-533
Cow position: chr13:42218483-42218109 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 260
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 184, 17

Conread position: 168-540
Cow position: chr13:2388373-2388004 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-540
Cow position: chr13:3056694-3056321 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-540
Cow position: chr13:21839758-21839387 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 17

Conread position: 184-344
Cow position: chr13:27921635-27921474 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 97, 0

Conread position: 185-532
Cow position: chr13:60700211-60699857 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 331

Conread position: 186-309
Cow position: chr13:30656525-30656401 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 186-330
Cow position: chr13:35757704-35757848 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 186-351
Cow position: chr13:22184804-22184642 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 186-358
Cow position: chr13:31733629-31733455 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 166, 0

Conread position: 186-486
Cow position: chr13:677477-677777 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 75

Conread position: 186-486
Cow position: chr13:30244223-30243921 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 264

Conread position: 186-488
Cow position: chr13:58263229-58263531 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 204
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 82, 16

Conread position: 186-500
Cow position: chr13:23002847-23002523 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 65

Conread position: 186-503
Cow position: chr13:34910410-34910091 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 264

Conread position: 186-505
Cow position: chr13:30238700-30239016 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 102

Conread position: 186-531
Cow position: chr13:1592694-1592353 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 178

Conread position: 186-532
Cow position: chr13:15520049-15519704 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-532
Cow position: chr13:58118452-58118107 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-533
Cow position: chr13:3653862-3653516 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-533
Cow position: chr13:6667660-6667330 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 92

Conread position: 186-533
Cow position: chr13:9045243-9045572 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 50

Conread position: 186-533
Cow position: chr13:13900327-13900672 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 118

Conread position: 186-533
Cow position: chr13:15923921-15923576 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 30

Conread position: 186-533
Cow position: chr13:30303741-30304087 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 317

Conread position: 186-533
Cow position: chr13:31611844-31611503 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 49

Conread position: 186-533
Cow position: chr13:32737366-32737020 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 310

Conread position: 186-533
Cow position: chr13:34029872-34030214 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 90

Conread position: 186-533
Cow position: chr13:50109909-50110254 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 275

Conread position: 186-533
Cow position: chr13:60466786-60467130 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 148

Conread position: 186-539
Cow position: chr13:4941847-4942194 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 159

Conread position: 186-540
Cow position: chr13:5625536-5625192 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 53

Conread position: 186-540
Cow position: chr13:6758440-6758780 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 245
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 67, 46

Conread position: 186-540
Cow position: chr13:16254922-16254573 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 102

Conread position: 186-540
Cow position: chr13:32984893-32984540 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-540
Cow position: chr13:34424219-34424573 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-540
Cow position: chr13:34937939-34938275 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 95

Conread position: 186-540
Cow position: chr13:46101796-46102141 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 232
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 157, 117

Conread position: 186-571
Cow position: chr13:47229545-47229162 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 76

Conread position: 186-573
Cow position: chr13:20541580-20541196 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 67

Conread position: 186-574
Cow position: chr13:17308930-17309329 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-575
Cow position: chr13:25692153-25692540 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 102

Conread position: 186-575
Cow position: chr13:43982626-43982239 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 54

Conread position: 187-533
Cow position: chr13:34325101-34324755 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 196

Conread position: 187-533
Cow position: chr13:49974135-49974480 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 298

Conread position: 191-532
Cow position: chr13:33335847-33335511 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 102

Conread position: 191-540
Cow position: chr13:32545844-32546191 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 63

Conread position: 192-500
Cow position: chr13:19413950-19414240 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 201, 28

Conread position: 192-533
Cow position: chr13:57024165-57024501 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 53

Conread position: 194-468
Cow position: chr13:31730407-31730132 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 23

Conread position: 194-468
Cow position: chr13:41696330-41696604 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 189
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 39, 44

Conread position: 194-540
Cow position: chr13:14178369-14178028 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 237
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 48, 112

Conread position: 201-533
Cow position: chr13:4484270-4484597 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 186

Conread position: 202-500
Cow position: chr13:34765972-34765684 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 37

Conread position: 202-533
Cow position: chr13:28670786-28670459 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 65

Conread position: 203-540
Cow position: chr13:5628334-5628005 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 229
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 48

Conread position: 207-540
Cow position: chr13:30278102-30278427 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 224
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 143, 89

Conread position: 207-575
Cow position: chr13:26844516-26844873 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 66

Conread position: 208-574
Cow position: chr13:52646396-52646018 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 287

Conread position: 215-533
Cow position: chr13:34041847-34041533 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 247

Conread position: 243-437
Cow position: chr13:48358223-48358419 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 109, 16

Conread position: 259-532
Cow position: chr13:15543072-15543343 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 175
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 94, 117

Conread position: 280-540
Cow position: chr13:47567769-47568025 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 174
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 173

Conread position: 283-575
Cow position: chr13:17331207-17330903 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 211
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 67, 34

Conread position: 291-574
Cow position: chr13:11798148-11797862 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 205
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 55, 181

Conread position: 298-485
Cow position: chr13:38669950-38670138 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 68, 35

Conread position: 308-540
Cow position: chr13:35757852-35758083 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 44, 187

Conread position: 309-571
Cow position: chr13:34049319-34049581 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 183
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 29, 17

Conread position: 320-573
Cow position: chr13:30654789-30654523 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 188
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 30, 0

Conread position: 321-540
Cow position: chr13:21696844-21697066 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 174

Conread position: 321-575
Cow position: chr13:34154164-34153903 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 76, 24

Conread position: 399-574
Cow position: chr13:14402424-14402240 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 129, 104

Conread position: 400-533
Cow position: chr13:43590006-43590135 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 105, 0

Show alignments to all cow chromosomes.